Wall clock time and date at job start Tue Mar 31 2020 16:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00081 * 2 1 4 4 O 1.42902 * 109.47348 * 135.00132 * 3 2 1 5 5 C 1.42898 * 113.99885 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.89244 * 32.42125 * 5 4 3 7 7 C 1.55162 * 111.00161 * 268.54080 * 5 4 3 8 8 C 1.54328 * 102.94297 * 206.38984 * 7 5 4 9 9 N 1.47025 * 107.26895 * 22.19032 * 8 7 5 10 10 C 1.34779 * 125.64718 * 181.02089 * 9 8 7 11 11 O 1.21277 * 120.00475 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99613 * 0.03158 * 10 9 8 13 13 C 1.50706 * 109.46832 * 179.97438 * 12 10 9 14 14 C 1.38303 * 119.93034 * 90.00084 * 13 12 10 15 15 C 1.38099 * 120.06408 * 180.02562 * 14 13 12 16 16 C 1.38882 * 119.93443 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.06633 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00355 * 354.47144 * 17 16 15 19 19 H 1.07998 * 119.99409 * 5.05373 * 18 17 16 20 20 C 1.38651 * 120.00088 * 185.05761 * 18 17 16 21 21 N 1.31552 * 120.00423 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00037 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46940 * 89.99867 * 22 20 18 24 24 H 1.48497 * 109.47214 * 210.00348 * 22 20 18 25 25 H 1.48504 * 109.47273 * 330.00405 * 22 20 18 26 26 C 1.38874 * 119.85938 * 0.28773 * 16 15 14 27 27 C 1.38105 * 119.93027 * 359.41605 * 26 16 15 28 28 C 1.47424 * 108.70639 * 1.29153 * 9 8 7 29 29 H 1.07999 * 120.00267 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99870 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00084 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47457 * 14.99791 * 3 2 1 33 33 H 1.08998 * 109.47173 * 254.99992 * 3 2 1 34 34 H 1.08999 * 110.71852 * 88.02327 * 7 5 4 35 35 H 1.09001 * 110.71929 * 324.74755 * 7 5 4 36 36 H 1.08996 * 109.87822 * 262.77728 * 8 7 5 37 37 H 1.08993 * 110.01041 * 141.68417 * 8 7 5 38 38 H 1.08999 * 109.47675 * 60.00006 * 12 10 9 39 39 H 1.09000 * 109.47496 * 299.99361 * 12 10 9 40 40 H 1.07996 * 119.96534 * 0.02562 * 14 13 12 41 41 H 1.08007 * 120.03126 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00417 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.03515 * 179.72231 * 26 16 15 44 44 H 1.08002 * 119.95916 * 180.27993 * 27 26 16 45 45 H 1.09000 * 110.36700 * 94.47506 * 28 9 8 46 46 H 1.08993 * 110.36569 * 216.80457 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 1 3.2949 3.3146 0.8349 7 6 5.1196 2.3731 0.0658 8 6 6.1456 3.3106 0.7367 9 7 5.7891 3.4006 2.1602 10 6 6.4320 4.1398 3.0858 11 8 6.0489 4.1380 4.2365 12 6 7.6271 4.9686 2.6908 13 6 8.1573 5.6940 3.9007 14 6 9.1217 5.0996 4.6940 15 6 9.6091 5.7617 5.8037 16 6 9.1302 7.0257 6.1223 17 8 9.6078 7.6792 7.2122 18 6 10.4602 7.0017 8.0074 19 1 10.7974 6.0162 7.7218 20 6 10.9038 7.5701 9.1917 21 7 11.7359 6.9093 9.9673 22 14 10.3210 9.2749 9.6852 23 1 9.0815 9.1592 10.4948 24 1 11.3755 9.9455 10.4875 25 1 10.0427 10.0753 8.4657 26 6 8.1578 7.6175 5.3268 27 6 7.6788 6.9529 4.2150 28 6 4.6158 2.5433 2.4089 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1162 0.2659 33 1 2.4755 1.4867 -0.9926 34 1 4.8449 2.7451 -0.9212 35 1 5.5099 1.3573 0.0015 36 1 6.0988 4.2990 0.2797 37 1 7.1500 2.9008 0.6313 38 1 7.3316 5.6943 1.9331 39 1 8.4033 4.3181 2.2878 40 1 9.4941 4.1168 4.4454 41 1 10.3620 5.2968 6.4230 42 1 12.0465 7.3072 10.7957 43 1 7.7801 8.5986 5.5746 44 1 6.9258 7.4146 3.5935 45 1 4.9316 1.5587 2.7539 46 1 3.9543 3.0083 3.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320961652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:25 Heat of formation + Delta-G solvation = -52.366739 kcal Electronic energy + Delta-G solvation = -26778.356191 eV Core-core repulsion = 22827.794965 eV Total energy + Delta-G solvation = -3950.561226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36492 -39.22743 -38.60488 -37.00723 -36.38379 -34.24162 -32.49819 -31.83921 -30.87034 -30.19297 -29.23726 -26.95155 -26.16825 -24.92806 -23.55275 -22.05473 -21.67516 -20.73305 -20.36777 -19.29252 -17.85093 -17.72394 -17.27389 -17.18103 -16.29465 -15.78745 -15.68133 -15.16127 -14.81795 -14.55545 -14.36751 -14.05781 -13.82256 -13.81140 -13.66099 -13.51113 -13.24618 -12.97066 -12.70272 -12.60768 -12.35607 -12.32499 -12.16174 -11.88252 -11.63548 -11.47108 -11.26324 -11.18031 -10.89884 -10.72220 -10.63573 -10.34502 -10.11876 -9.79423 -9.75708 -9.33895 -8.82353 -8.81885 -8.18955 -7.26532 -6.37367 -4.03683 1.63268 2.16315 2.20507 2.69112 2.73710 3.25137 3.29367 3.38276 3.43608 4.03270 4.14565 4.27621 4.38648 4.47889 4.52940 4.62097 4.69092 4.84590 4.88566 4.92259 4.96058 5.00921 5.15182 5.18429 5.23387 5.24200 5.30464 5.34093 5.54337 5.56914 5.58015 5.62759 5.70342 5.79475 6.04513 6.05696 6.14362 6.18005 6.37540 6.60945 6.71105 6.84071 7.06557 7.26438 7.35158 7.36706 7.66299 7.85106 8.08431 8.22436 8.98048 9.60812 10.70349 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.001800 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.309147 B =15548.485000 C =15790.181247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.089 3.911 4 O -0.368 6.368 5 C 0.076 3.924 6 H 0.080 0.920 7 C -0.156 4.156 8 C 0.103 3.897 9 N -0.628 5.628 10 C 0.527 3.473 11 O -0.515 6.515 12 C -0.075 4.075 13 C -0.163 4.163 14 C -0.057 4.057 15 C -0.219 4.219 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.191 4.191 27 C -0.061 4.061 28 C 0.113 3.887 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.150 -10.180 -25.536 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.287 6.287 5 C 0.017 3.983 6 H 0.097 0.903 7 C -0.194 4.194 8 C -0.020 4.020 9 N -0.367 5.367 10 C 0.317 3.683 11 O -0.388 6.388 12 C -0.114 4.114 13 C -0.165 4.165 14 C -0.076 4.076 15 C -0.238 4.238 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.210 4.210 27 C -0.080 4.080 28 C -0.010 4.010 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.095 0.905 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.167 -10.047 -24.405 31.485 hybrid contribution -0.158 0.605 0.071 0.630 sum -17.326 -9.441 -24.335 31.329 Atomic orbital electron populations 1.23874 0.95581 1.02413 0.99660 1.22728 0.95649 0.98146 1.00607 1.21603 0.88622 0.96076 0.92465 1.87929 1.44423 1.35965 1.60369 1.23259 0.91614 0.87989 0.95455 0.90255 1.23175 0.95822 1.01250 0.99135 1.21966 0.98980 0.99930 0.81126 1.48495 1.31533 1.47319 1.09324 1.20775 0.84250 0.78902 0.84423 1.90768 1.66049 1.63518 1.18513 1.20398 0.94876 0.98209 0.97962 1.18714 1.02565 0.96119 0.99068 1.20567 0.95389 0.97791 0.93808 1.21228 1.05623 0.96664 1.00299 1.19120 0.91574 0.90721 0.87567 1.83568 1.56405 1.40335 1.31998 1.20776 1.21808 1.02613 1.01222 0.87627 1.24460 0.95627 0.99527 0.94387 1.69646 1.31235 1.38199 1.12749 0.86182 0.78457 0.83013 0.79242 1.19898 1.20814 1.18381 1.20146 1.01166 1.01800 0.97909 1.20394 0.97740 0.93995 0.95838 1.22014 0.87539 0.95827 0.95636 0.87684 0.88371 0.86481 0.92559 0.92157 0.89865 0.89371 0.91028 0.90826 0.88922 0.88859 0.87517 0.84929 0.91099 0.86531 0.87223 0.90467 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 14.31 29.01 0.42 -0.47 16 2 C -0.15 -0.91 9.89 -36.03 -0.36 -1.27 16 3 C 0.09 0.53 6.23 36.01 0.22 0.76 16 4 O -0.37 -3.08 10.14 -35.23 -0.36 -3.43 16 5 C 0.08 0.56 3.50 -24.46 -0.09 0.48 16 6 H 0.08 0.51 7.90 -51.93 -0.41 0.10 16 7 C -0.16 -0.87 6.68 -24.89 -0.17 -1.04 16 8 C 0.10 0.69 6.48 -3.06 -0.02 0.67 16 9 N -0.63 -6.77 3.32 -170.38 -0.57 -7.34 16 10 C 0.53 7.57 7.84 -10.98 -0.09 7.48 16 11 O -0.52 -10.01 16.29 5.56 0.09 -9.92 16 12 C -0.07 -0.94 5.02 -29.03 -0.15 -1.08 16 13 C -0.16 -2.82 4.38 -104.57 -0.46 -3.28 16 14 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 15 C -0.22 -4.96 9.17 -39.39 -0.36 -5.32 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.22 -5.95 8.59 0.04 0.00 -5.95 16 18 C -0.39 -11.26 9.95 30.88 0.31 -10.95 16 19 H 0.11 3.13 5.44 -52.49 -0.29 2.84 16 20 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 21 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 22 Si 0.91 22.19 28.62 -169.99 -4.86 17.32 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 26 C -0.19 -3.97 9.99 -39.40 -0.39 -4.37 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 C 0.11 1.16 6.65 -2.41 -0.02 1.15 16 29 H 0.10 0.41 8.06 -52.49 -0.42 -0.01 16 30 H 0.10 0.41 7.90 -52.48 -0.41 0.00 16 31 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.06 0.30 7.83 -51.93 -0.41 -0.11 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 3.13 5.64 -52.48 -0.30 2.83 16 42 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -34.31 390.22 -8.16 -42.47 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.86 Total: 0.94 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.27 Total: -14.83 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.21 Total: -32.49 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.27 Total: -19.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.31 -8.16 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320961652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.894 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds