Wall clock time and date at job start Tue Mar 31 2020 16:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00081 * 2 1 4 4 O 1.42902 * 109.47348 * 135.00132 * 3 2 1 5 5 C 1.42898 * 113.99885 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.89244 * 32.42125 * 5 4 3 7 7 C 1.55162 * 111.00161 * 268.54080 * 5 4 3 8 8 C 1.54328 * 102.94297 * 206.38984 * 7 5 4 9 9 N 1.47025 * 107.26895 * 22.19032 * 8 7 5 10 10 C 1.34779 * 125.64718 * 181.02089 * 9 8 7 11 11 O 1.21277 * 120.00475 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99613 * 0.03158 * 10 9 8 13 13 C 1.50706 * 109.46832 * 179.97438 * 12 10 9 14 14 C 1.38303 * 119.93034 * 90.00084 * 13 12 10 15 15 C 1.38099 * 120.06408 * 180.02562 * 14 13 12 16 16 C 1.38882 * 119.93443 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.06633 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00355 * 354.47144 * 17 16 15 19 19 H 1.07998 * 119.99409 * 5.05373 * 18 17 16 20 20 C 1.38651 * 120.00088 * 185.05761 * 18 17 16 21 21 N 1.31552 * 120.00423 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00037 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46940 * 89.99867 * 22 20 18 24 24 H 1.48497 * 109.47214 * 210.00348 * 22 20 18 25 25 H 1.48504 * 109.47273 * 330.00405 * 22 20 18 26 26 C 1.38874 * 119.85938 * 0.28773 * 16 15 14 27 27 C 1.38105 * 119.93027 * 359.41605 * 26 16 15 28 28 C 1.47424 * 108.70639 * 1.29153 * 9 8 7 29 29 H 1.07999 * 120.00267 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99870 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00084 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47457 * 14.99791 * 3 2 1 33 33 H 1.08998 * 109.47173 * 254.99992 * 3 2 1 34 34 H 1.08999 * 110.71852 * 88.02327 * 7 5 4 35 35 H 1.09001 * 110.71929 * 324.74755 * 7 5 4 36 36 H 1.08996 * 109.87822 * 262.77728 * 8 7 5 37 37 H 1.08993 * 110.01041 * 141.68417 * 8 7 5 38 38 H 1.08999 * 109.47675 * 60.00006 * 12 10 9 39 39 H 1.09000 * 109.47496 * 299.99361 * 12 10 9 40 40 H 1.07996 * 119.96534 * 0.02562 * 14 13 12 41 41 H 1.08007 * 120.03126 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00417 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.03515 * 179.72231 * 26 16 15 44 44 H 1.08002 * 119.95916 * 180.27993 * 27 26 16 45 45 H 1.09000 * 110.36700 * 94.47506 * 28 9 8 46 46 H 1.08993 * 110.36569 * 216.80457 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 1 3.2949 3.3146 0.8349 7 6 5.1196 2.3731 0.0658 8 6 6.1456 3.3106 0.7367 9 7 5.7891 3.4006 2.1602 10 6 6.4320 4.1398 3.0858 11 8 6.0489 4.1380 4.2365 12 6 7.6271 4.9686 2.6908 13 6 8.1573 5.6940 3.9007 14 6 9.1217 5.0996 4.6940 15 6 9.6091 5.7617 5.8037 16 6 9.1302 7.0257 6.1223 17 8 9.6078 7.6792 7.2122 18 6 10.4602 7.0017 8.0074 19 1 10.7974 6.0162 7.7218 20 6 10.9038 7.5701 9.1917 21 7 11.7359 6.9093 9.9673 22 14 10.3210 9.2749 9.6852 23 1 9.0815 9.1592 10.4948 24 1 11.3755 9.9455 10.4875 25 1 10.0427 10.0753 8.4657 26 6 8.1578 7.6175 5.3268 27 6 7.6788 6.9529 4.2150 28 6 4.6158 2.5433 2.4089 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1162 0.2659 33 1 2.4755 1.4867 -0.9926 34 1 4.8449 2.7451 -0.9212 35 1 5.5099 1.3573 0.0015 36 1 6.0988 4.2990 0.2797 37 1 7.1500 2.9008 0.6313 38 1 7.3316 5.6943 1.9331 39 1 8.4033 4.3181 2.2878 40 1 9.4941 4.1168 4.4454 41 1 10.3620 5.2968 6.4230 42 1 12.0465 7.3072 10.7957 43 1 7.7801 8.5986 5.5746 44 1 6.9258 7.4146 3.5935 45 1 4.9316 1.5587 2.7539 46 1 3.9543 3.0083 3.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320961652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:24 Heat of formation + Delta-G solvation = -74.235312 kcal Electronic energy + Delta-G solvation = -26779.304484 eV Core-core repulsion = 22827.794965 eV Total energy + Delta-G solvation = -3951.509518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34785 -40.74143 -39.55716 -38.34566 -37.46811 -34.71764 -34.52530 -33.17347 -31.84174 -31.70556 -29.99300 -28.31528 -26.99184 -26.49750 -24.40762 -23.71416 -22.39094 -22.06555 -20.82677 -20.27099 -19.80349 -19.09880 -18.34737 -18.13735 -16.90034 -16.82796 -16.66568 -16.37859 -16.01152 -15.79925 -15.66670 -15.63018 -15.12952 -15.07425 -14.56132 -14.38430 -14.35084 -14.18909 -14.07281 -13.83336 -13.76278 -13.17196 -13.03750 -12.83837 -12.80830 -12.54028 -12.45968 -12.41574 -12.31973 -11.93863 -11.87754 -11.66747 -11.28935 -11.00570 -10.85293 -10.82702 -10.21157 -9.79733 -9.69087 -8.99562 -8.50921 -6.23658 0.57830 0.59526 1.22370 1.29609 1.34567 1.50858 1.65014 1.87222 2.27420 2.74714 2.84183 3.03118 3.16843 3.44651 3.60786 3.82037 3.92563 4.02063 4.06186 4.06383 4.16504 4.21813 4.27470 4.37532 4.44467 4.50018 4.55721 4.58113 4.63050 4.68299 4.75584 4.79373 4.85592 4.96616 4.98856 5.01460 5.14568 5.24124 5.27952 5.37151 5.55774 5.67157 5.72821 5.73243 5.78829 5.90316 6.21509 6.23536 6.48589 6.83171 7.19011 7.57565 8.60879 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.001800 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.309147 B =15548.485000 C =15790.181247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.172 4.172 3 C 0.086 3.914 4 O -0.391 6.391 5 C 0.082 3.918 6 H 0.093 0.907 7 C -0.146 4.146 8 C 0.094 3.906 9 N -0.621 5.621 10 C 0.525 3.475 11 O -0.582 6.582 12 C -0.070 4.070 13 C -0.140 4.140 14 C -0.065 4.065 15 C -0.239 4.239 16 C 0.118 3.882 17 O -0.245 6.245 18 C -0.401 4.401 19 H 0.078 0.922 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.193 4.193 27 C -0.058 4.058 28 C 0.106 3.894 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.285 0.715 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.063 0.937 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.184 -9.530 -29.927 36.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C 0.010 3.990 4 O -0.310 6.310 5 C 0.024 3.976 6 H 0.111 0.889 7 C -0.184 4.184 8 C -0.027 4.027 9 N -0.357 5.357 10 C 0.315 3.685 11 O -0.461 6.461 12 C -0.109 4.109 13 C -0.141 4.141 14 C -0.083 4.083 15 C -0.258 4.258 16 C 0.069 3.931 17 O -0.153 6.153 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.188 1.188 25 H -0.186 1.186 26 C -0.212 4.212 27 C -0.076 4.076 28 C -0.018 4.018 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.147 0.853 44 H 0.172 0.828 45 H 0.082 0.918 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.220 -9.435 -28.899 35.967 hybrid contribution 0.263 0.156 1.089 1.131 sum -18.957 -9.279 -27.810 34.912 Atomic orbital electron populations 1.24060 0.95394 1.03280 0.98307 1.22814 0.96121 0.98212 1.01905 1.21744 0.88241 0.96217 0.92774 1.87900 1.45223 1.36457 1.61408 1.23195 0.92354 0.88294 0.93807 0.88946 1.23166 0.94275 1.01124 0.99797 1.22358 1.00041 1.01931 0.78378 1.48464 1.30767 1.45656 1.10776 1.20983 0.84505 0.79096 0.83912 1.90762 1.68017 1.66041 1.21251 1.20514 0.94904 0.99172 0.96357 1.19312 0.99763 0.95693 0.99322 1.20904 0.95855 0.98692 0.92834 1.21252 1.05930 0.96920 1.01722 1.19685 0.93577 0.91960 0.87847 1.83507 1.57584 1.40787 1.33442 1.20711 1.22692 1.02100 1.02242 0.90411 1.25302 0.95824 1.03577 0.94198 1.69730 1.32950 1.40142 1.13607 0.85196 0.78454 0.78111 0.78785 1.19337 1.18842 1.18587 1.20516 1.00004 1.02525 0.98164 1.20947 0.97631 0.94053 0.94941 1.22033 0.87570 0.94769 0.97419 0.86855 0.87540 0.86926 0.91937 0.90429 0.86944 0.89729 0.88262 0.89260 0.84547 0.85672 0.85077 0.87598 0.90550 0.85256 0.82774 0.91841 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 14.31 67.78 0.97 -0.46 16 2 C -0.17 -1.81 9.89 25.65 0.25 -1.56 16 3 C 0.09 0.84 6.23 71.24 0.44 1.29 16 4 O -0.39 -5.85 10.14 -148.98 -1.51 -7.36 16 5 C 0.08 1.00 3.50 32.07 0.11 1.11 16 6 H 0.09 0.88 7.90 -2.39 -0.02 0.87 16 7 C -0.15 -1.01 6.68 31.79 0.21 -0.79 16 8 C 0.09 0.78 6.48 86.73 0.56 1.35 16 9 N -0.62 -11.45 3.32 -811.35 -2.70 -14.14 16 10 C 0.52 13.53 7.84 87.66 0.69 14.21 16 11 O -0.58 -22.18 16.29 -3.02 -0.05 -22.23 16 12 C -0.07 -1.41 5.02 29.10 0.15 -1.26 16 13 C -0.14 -4.40 4.38 -19.83 -0.09 -4.48 16 14 C -0.06 -2.43 9.69 22.25 0.22 -2.22 16 15 C -0.24 -11.35 9.17 22.39 0.21 -11.14 16 16 C 0.12 5.91 6.65 22.58 0.15 6.06 16 17 O -0.25 -14.08 8.59 -22.78 -0.20 -14.27 16 18 C -0.40 -24.81 9.95 67.92 0.68 -24.13 16 19 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 20 C 0.01 0.55 5.49 84.83 0.47 1.02 16 21 N -0.92 -56.97 13.96 21.61 0.30 -56.67 16 22 Si 0.97 47.14 28.62 68.60 1.96 49.10 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 26 C -0.19 -7.89 9.99 22.39 0.22 -7.66 16 27 C -0.06 -1.89 9.69 22.25 0.22 -1.67 16 28 C 0.11 2.06 6.65 86.93 0.58 2.64 16 29 H 0.11 0.70 8.06 -2.91 -0.02 0.68 16 30 H 0.11 0.68 7.90 -2.91 -0.02 0.65 16 31 H 0.11 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.06 0.52 7.83 -2.38 -0.02 0.50 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.14 1.66 8.08 -2.39 -0.02 1.64 16 39 H 0.13 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.11 5.50 5.64 -2.91 -0.02 5.49 16 42 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 43 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 44 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -82.17 390.22 4.81 -77.36 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.97 Total: 15.92 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 6.03 Total: -27.71 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -2.40 Total: -70.81 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.75 Total: -43.86 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.96 Total: 49.10 kcal Total: -82.17 4.81 -77.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320961652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.125 kcal (2) G-P(sol) polarization free energy of solvation -82.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds