Wall clock time and date at job start Tue Mar 31 2020 17:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34237 * 116.99456 * 2 1 4 4 O 1.20816 * 120.00197 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99432 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.83926 * 319.16875 * 5 3 2 7 7 C 1.53436 * 109.79890 * 80.00245 * 5 3 2 8 8 H 1.08991 * 109.57525 * 176.15617 * 7 5 3 9 9 C 1.52999 * 109.57022 * 296.53191 * 7 5 3 10 10 C 1.52849 * 108.85313 * 56.33744 * 7 5 3 11 11 C 1.50593 * 110.49967 * 51.42527 * 10 7 5 12 12 C 1.38513 * 118.93745 * 159.31017 * 11 10 7 13 13 C 1.38112 * 120.30666 * 179.87326 * 12 11 10 14 14 C 1.38308 * 120.15724 * 359.93949 * 13 12 11 15 15 C 1.38029 * 119.90189 * 0.09008 * 14 13 12 16 16 C 1.38570 * 121.50162 * 339.26443 * 11 10 7 17 17 N 1.40180 * 120.81896 * 0.52376 * 16 11 10 18 18 C 1.34779 * 120.55418 * 166.49503 * 17 16 11 19 19 O 1.21283 * 120.00150 * 354.91767 * 18 17 16 20 20 C 1.50694 * 119.99378 * 174.91402 * 18 17 16 21 21 H 1.08999 * 109.47750 * 320.98161 * 20 18 17 22 22 C 1.53003 * 109.47363 * 80.98230 * 20 18 17 23 23 C 1.50704 * 109.46972 * 200.98212 * 20 18 17 24 24 H 1.08004 * 119.99622 * 359.97438 * 23 20 18 25 25 C 1.37876 * 120.00024 * 180.02562 * 23 20 18 26 26 N 1.31511 * 120.00114 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 120.00009 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.47103 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47234 * 119.99471 * 27 25 23 30 30 H 1.48502 * 109.47330 * 240.00000 * 27 25 23 31 31 H 1.08996 * 109.46724 * 299.99612 * 1 2 3 32 32 H 1.08995 * 109.47027 * 59.99399 * 1 2 3 33 33 H 1.08992 * 109.46640 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47365 * 60.00165 * 9 7 5 35 35 H 1.09000 * 109.47260 * 179.97438 * 9 7 5 36 36 H 1.09001 * 109.47237 * 299.99557 * 9 7 5 37 37 H 1.09004 * 109.27115 * 171.68389 * 10 7 5 38 38 H 1.08999 * 109.27417 * 291.16012 * 10 7 5 39 39 H 1.08008 * 119.84234 * 359.85963 * 12 11 10 40 40 H 1.08004 * 119.91992 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.05008 * 180.11508 * 14 13 12 42 42 H 1.07995 * 119.98459 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.47222 * 188.99356 * 22 20 18 44 44 H 1.08997 * 109.46565 * 308.99707 * 22 20 18 45 45 H 1.09005 * 109.46836 * 68.99426 * 22 20 18 46 46 H 0.97006 * 120.00142 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9766 0.5194 0.6695 7 6 4.0979 1.0522 -1.4226 8 1 5.1805 1.1774 -1.4315 9 6 3.7388 -0.3602 -1.8885 10 6 3.4559 2.0780 -2.3562 11 6 3.6144 3.4687 -1.8006 12 6 3.5029 4.5501 -2.6590 13 6 3.6407 5.8378 -2.1792 14 6 3.8900 6.0561 -0.8364 15 6 4.0031 4.9840 0.0256 16 6 3.8671 3.6866 -0.4557 17 7 3.9948 2.6113 0.4345 18 6 4.5020 2.8003 1.6688 19 8 4.9375 3.8869 1.9857 20 6 4.5279 1.6612 2.6551 21 1 3.6095 1.0812 2.5646 22 6 5.7303 0.7611 2.3634 23 6 4.6393 2.2105 4.0540 24 1 4.6870 3.2777 4.2129 25 6 4.6813 1.3506 5.1310 26 7 4.6237 0.0511 4.9375 27 14 4.8201 2.0314 6.8649 28 1 4.8683 3.5147 6.8119 29 1 3.6423 1.6022 7.6611 30 1 6.0606 1.5188 7.5002 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0276 -0.0005 34 1 2.6554 -0.4800 -1.8837 35 1 4.1167 -0.5166 -2.8988 36 1 4.1881 -1.0902 -1.2151 37 1 3.9353 2.0244 -3.3337 38 1 2.3949 1.8523 -2.4637 39 1 3.3075 4.3854 -3.7084 40 1 3.5530 6.6765 -2.8542 41 1 3.9956 7.0638 -0.4628 42 1 4.1974 5.1529 1.0744 43 1 5.6621 -0.1435 2.9676 44 1 5.7354 0.4929 1.3069 45 1 6.6499 1.2928 2.6077 46 1 4.6529 -0.5539 5.6952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361758471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:43 Heat of formation + Delta-G solvation = -99.010796 kcal Electronic energy + Delta-G solvation = -30529.092065 eV Core-core repulsion = 26576.508201 eV Total energy + Delta-G solvation = -3952.583864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81432 -41.14903 -39.70129 -38.10044 -37.36275 -35.96147 -35.21906 -32.96672 -32.42376 -30.87349 -29.29531 -27.77549 -27.36643 -27.14008 -25.24987 -23.57523 -23.13682 -22.73421 -21.22302 -20.10640 -19.02273 -18.60153 -18.15203 -17.90582 -17.61602 -17.25589 -16.80204 -16.46131 -16.08784 -15.89799 -15.46361 -15.32190 -14.87853 -14.61923 -14.38953 -14.32658 -14.26860 -14.09989 -13.54883 -13.39938 -13.27939 -13.03741 -12.96639 -12.94555 -12.77641 -12.62565 -12.37239 -12.33565 -12.28234 -12.15329 -12.08726 -11.80919 -11.66822 -11.63571 -11.17355 -11.13676 -10.63121 -10.20614 -9.62249 -8.86837 -8.23459 -6.33943 0.37214 0.48798 0.94692 1.27340 1.35982 1.38438 1.51333 1.68413 1.96942 2.39396 2.90185 3.06866 3.33361 3.51101 3.60408 3.74091 3.82311 3.97178 4.22102 4.26303 4.28504 4.29977 4.35217 4.42662 4.50030 4.56323 4.63134 4.67268 4.68795 4.76779 4.78404 4.88387 4.91440 5.04457 5.11207 5.18163 5.23722 5.27720 5.39367 5.44549 5.50181 5.61088 5.64793 5.67601 5.82040 6.02926 6.17710 6.28852 6.60557 6.70272 7.09945 7.34184 8.83660 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.005194 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.242533 B = 5389.890706 C = 6670.811106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.458 3.542 4 O -0.522 6.522 5 C 0.134 3.866 6 H 0.139 0.861 7 C -0.089 4.089 8 H 0.103 0.897 9 C -0.144 4.144 10 C -0.071 4.071 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.143 4.143 14 C -0.112 4.112 15 C -0.189 4.189 16 C 0.146 3.854 17 N -0.546 5.546 18 C 0.520 3.480 19 O -0.543 6.543 20 C 0.034 3.966 21 H 0.033 0.967 22 C -0.117 4.117 23 C -0.535 4.535 24 H 0.045 0.955 25 C 0.027 3.973 26 N -0.903 5.903 27 Si 0.956 3.044 28 H -0.282 1.282 29 H -0.273 1.273 30 H -0.269 1.269 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.028 0.972 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 -2.931 -19.599 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.300 3.700 4 O -0.410 6.410 5 C 0.029 3.971 6 H 0.156 0.844 7 C -0.108 4.108 8 H 0.121 0.879 9 C -0.201 4.201 10 C -0.108 4.108 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.161 4.161 14 C -0.131 4.131 15 C -0.209 4.209 16 C 0.053 3.947 17 N -0.270 5.270 18 C 0.313 3.687 19 O -0.420 6.420 20 C 0.012 3.988 21 H 0.051 0.949 22 C -0.175 4.175 23 C -0.573 4.573 24 H 0.063 0.937 25 C -0.173 4.173 26 N -0.542 5.542 27 Si 0.781 3.219 28 H -0.207 1.207 29 H -0.198 1.198 30 H -0.194 1.194 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.091 0.909 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.708 -2.308 -19.240 19.941 hybrid contribution -0.323 0.768 1.866 2.043 sum -5.031 -1.541 -17.374 18.153 Atomic orbital electron populations 1.23592 0.74739 1.06025 1.02245 1.86537 1.24967 1.31491 1.83390 1.24089 0.92234 0.81962 0.71753 1.90672 1.67269 1.37436 1.45599 1.21531 0.87677 0.85428 1.02421 0.84397 1.21559 1.01948 0.98695 0.88567 0.87914 1.21886 1.02761 0.92067 1.03393 1.20605 1.01500 0.88515 1.00137 1.19770 1.04653 0.98026 0.90326 1.21248 0.98756 0.91156 1.00333 1.21379 1.01557 0.98103 0.95082 1.21276 0.99192 0.98310 0.94300 1.22120 1.04011 0.92213 1.02588 1.18047 0.99774 0.86906 0.89969 1.45779 1.59539 1.07987 1.13660 1.22103 0.74373 0.91150 0.81054 1.90353 1.46572 1.27754 1.77296 1.18843 0.97350 0.90598 0.91962 0.94911 1.21610 0.95983 1.00736 0.99164 1.21158 1.52226 0.93117 0.90837 0.93707 1.25535 0.94144 0.95180 1.02453 1.69935 1.49933 1.02085 1.32210 0.85539 0.78358 0.78161 0.79824 1.20731 1.19802 1.19444 0.93419 0.91106 0.84222 0.91787 0.88604 0.90935 0.85936 0.90925 0.82169 0.82865 0.84805 0.85282 0.90147 0.93043 0.95281 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.35 -9.70 8.99 -51.48 -0.46 -10.17 16 3 C 0.46 15.58 5.47 71.24 0.39 15.97 16 4 O -0.52 -21.00 15.16 21.99 0.33 -20.67 16 5 C 0.13 4.46 1.94 44.31 0.09 4.54 16 6 H 0.14 4.69 4.70 -2.38 -0.01 4.67 16 7 C -0.09 -2.06 2.67 -10.70 -0.03 -2.08 16 8 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 9 C -0.14 -2.33 8.85 71.98 0.64 -1.69 16 10 C -0.07 -1.56 4.57 29.76 0.14 -1.42 16 11 C -0.13 -3.74 5.44 -19.75 -0.11 -3.85 16 12 C -0.10 -2.36 9.66 22.31 0.22 -2.15 16 13 C -0.14 -3.62 10.04 22.26 0.22 -3.40 16 14 C -0.11 -3.63 10.05 22.24 0.22 -3.41 16 15 C -0.19 -7.87 8.88 22.41 0.20 -7.67 16 16 C 0.15 5.73 5.40 38.08 0.21 5.93 16 17 N -0.55 -22.56 2.43 -610.94 -1.49 -24.04 16 18 C 0.52 25.89 6.71 87.65 0.59 26.48 16 19 O -0.54 -30.09 12.35 -3.04 -0.04 -30.13 16 20 C 0.03 1.74 1.78 -12.29 -0.02 1.71 16 21 H 0.03 1.76 7.18 -2.39 -0.02 1.74 16 22 C -0.12 -5.36 8.40 71.98 0.60 -4.75 16 23 C -0.54 -31.37 8.33 25.60 0.21 -31.16 16 24 H 0.04 2.82 6.95 -2.91 -0.02 2.80 16 25 C 0.03 1.52 5.30 84.65 0.45 1.97 16 26 N -0.90 -49.69 11.43 21.45 0.25 -49.45 16 27 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 28 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 31 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 33 H 0.14 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.08 6.33 -2.39 -0.02 1.06 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.77 8.12 -2.38 -0.02 1.76 16 38 H 0.07 1.62 7.39 -2.39 -0.02 1.61 16 39 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.13 6.35 4.94 -24.38 -0.12 6.23 16 43 H 0.08 3.89 6.37 -2.39 -0.02 3.88 16 44 H 0.05 1.90 6.56 -2.39 -0.02 1.89 16 45 H 0.03 1.37 8.12 -2.38 -0.02 1.35 16 46 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -75.56 363.24 6.72 -68.84 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.89 Total: 21.87 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.21 Total: -3.19 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.24 Total: -73.49 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -0.17 Total: -60.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -75.56 6.72 -68.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361758471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.171 kcal (2) G-P(sol) polarization free energy of solvation -75.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds