Wall clock time and date at job start Tue Mar 31 2020 17:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99537 * 2 1 4 4 O 1.20819 * 120.00133 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99335 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.78584 * 319.19530 * 5 3 2 7 7 C 1.53422 * 109.79622 * 79.99961 * 5 3 2 8 8 H 1.09006 * 109.56837 * 176.29644 * 7 5 3 9 9 C 1.52991 * 109.57399 * 296.54091 * 7 5 3 10 10 C 1.52844 * 108.86362 * 56.36000 * 7 5 3 11 11 C 1.50592 * 110.50581 * 51.40524 * 10 7 5 12 12 C 1.38513 * 118.92986 * 159.48003 * 11 10 7 13 13 C 1.38117 * 120.30194 * 179.53382 * 12 11 10 14 14 C 1.38303 * 120.15486 * 0.07212 * 13 12 11 15 15 C 1.38034 * 119.90635 * 0.07419 * 14 13 12 16 16 C 1.38566 * 121.50359 * 339.26714 * 11 10 7 17 17 N 1.40175 * 120.81646 * 0.53380 * 16 11 10 18 18 C 1.34783 * 120.55072 * 166.46528 * 17 16 11 19 19 O 1.21282 * 120.00178 * 355.49257 * 18 17 16 20 20 C 1.50699 * 119.99557 * 175.49304 * 18 17 16 21 21 H 1.09003 * 109.47357 * 46.57670 * 20 18 17 22 22 C 1.53003 * 109.47269 * 286.57512 * 20 18 17 23 23 C 1.50701 * 109.46846 * 166.57667 * 20 18 17 24 24 H 1.07997 * 120.00356 * 5.24293 * 23 20 18 25 25 C 1.37879 * 120.00117 * 185.24707 * 23 20 18 26 26 N 1.31516 * 119.99620 * 5.54977 * 25 23 20 27 27 Si 1.86802 * 120.00225 * 185.55445 * 25 23 20 28 28 H 1.48500 * 109.46961 * 94.99671 * 27 25 23 29 29 H 1.48500 * 109.47072 * 214.99375 * 27 25 23 30 30 H 1.48495 * 109.46910 * 334.99610 * 27 25 23 31 31 H 1.08996 * 109.47589 * 60.00396 * 1 2 3 32 32 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47399 * 299.99901 * 1 2 3 34 34 H 1.09008 * 109.47112 * 60.00388 * 9 7 5 35 35 H 1.09005 * 109.47740 * 300.00604 * 9 7 5 36 36 H 1.08998 * 109.47988 * 180.02562 * 9 7 5 37 37 H 1.09002 * 109.26916 * 171.66987 * 10 7 5 38 38 H 1.08999 * 109.27300 * 291.13677 * 10 7 5 39 39 H 1.08003 * 119.85235 * 359.57674 * 12 11 10 40 40 H 1.07998 * 119.92336 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.05075 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.98452 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47149 * 58.04087 * 22 20 18 44 44 H 1.08994 * 109.47342 * 178.04666 * 22 20 18 45 45 H 1.09003 * 109.46757 * 298.04522 * 22 20 18 46 46 H 0.97007 * 119.99535 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9756 0.5188 0.6693 7 6 4.0977 1.0520 -1.4225 8 1 5.1808 1.1748 -1.4308 9 6 3.7384 -0.3602 -1.8884 10 6 3.4563 2.0781 -2.3562 11 6 3.6148 3.4687 -1.8006 12 6 3.5003 4.5501 -2.6585 13 6 3.6311 5.8382 -2.1774 14 6 3.8791 6.0564 -0.8344 15 6 3.9976 4.9841 0.0267 16 6 3.8671 3.6866 -0.4556 17 7 3.9946 2.6113 0.4345 18 6 4.5020 2.8002 1.6688 19 8 4.9283 3.8895 1.9892 20 6 4.5396 1.6577 2.6509 21 1 4.9288 0.7671 2.1574 22 6 3.1253 1.3795 3.1641 23 6 5.4322 2.0206 3.8096 24 1 5.8553 3.0120 3.8755 25 6 5.7087 1.0868 4.7856 26 7 5.2845 -0.1507 4.6507 27 14 6.6858 1.5794 6.2996 28 1 5.7514 1.9305 7.3991 29 1 7.5459 0.4457 6.7241 30 1 7.5367 2.7534 5.9791 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.6550 -0.4798 -1.8836 35 1 4.1875 -1.0904 -1.2150 36 1 4.1171 -0.5171 -2.8984 37 1 3.9360 2.0243 -3.3336 38 1 2.3953 1.8526 -2.4641 39 1 3.3072 4.3855 -3.7083 40 1 3.5403 6.6769 -2.8517 41 1 3.9806 7.0644 -0.4600 42 1 4.1916 5.1530 1.0756 43 1 2.4717 1.1511 2.3223 44 1 3.1473 0.5310 3.8478 45 1 2.7495 2.2585 3.6879 46 1 5.4793 -0.8078 5.3372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361758472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:48 Heat of formation + Delta-G solvation = -82.168348 kcal Electronic energy + Delta-G solvation = -30592.989283 eV Core-core repulsion = 26641.135763 eV Total energy + Delta-G solvation = -3951.853521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48451 -39.77745 -38.21703 -36.87486 -36.08495 -33.96625 -33.85716 -31.44727 -30.96850 -29.49072 -28.22130 -26.75876 -25.97223 -25.28040 -23.67243 -22.29963 -21.92795 -21.43383 -19.70765 -18.74111 -17.64144 -17.29740 -16.53356 -16.43006 -15.97504 -15.95660 -15.42925 -14.89221 -14.79656 -14.52494 -14.10334 -13.77541 -13.48229 -13.22620 -13.15691 -13.00687 -12.87968 -12.71896 -12.33080 -12.24620 -11.98593 -11.95155 -11.70172 -11.31422 -11.21288 -11.11035 -10.97942 -10.91395 -10.72348 -10.67651 -10.60471 -10.48254 -10.36701 -10.03858 -9.78257 -9.13130 -8.59550 -8.48002 -8.33627 -7.50948 -6.15941 -4.17274 1.63435 1.75729 2.26849 2.55472 3.20704 3.28971 3.35702 3.42797 3.44629 4.14470 4.38429 4.46036 4.68798 4.71480 4.88129 5.10980 5.11475 5.17361 5.19522 5.22468 5.29515 5.37063 5.39993 5.51043 5.55282 5.61723 5.64157 5.79825 5.83372 5.92235 6.01745 6.03594 6.20185 6.37240 6.40826 6.44457 6.57856 6.62227 6.70961 6.73255 6.89212 6.93948 7.23099 7.47689 7.51720 7.68081 7.86455 7.89446 8.14295 8.82599 8.91621 9.47955 10.94172 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.005186 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.605585 B = 5398.241573 C = 6801.222588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.457 3.543 4 O -0.488 6.488 5 C 0.147 3.853 6 H 0.145 0.855 7 C -0.096 4.096 8 H 0.100 0.900 9 C -0.150 4.150 10 C -0.073 4.073 11 C -0.124 4.124 12 C -0.101 4.101 13 C -0.153 4.153 14 C -0.104 4.104 15 C -0.152 4.152 16 C 0.182 3.818 17 N -0.549 5.549 18 C 0.525 3.475 19 O -0.506 6.506 20 C 0.031 3.969 21 H 0.059 0.941 22 C -0.126 4.126 23 C -0.507 4.507 24 H 0.076 0.924 25 C 0.063 3.937 26 N -0.893 5.893 27 Si 0.900 3.100 28 H -0.280 1.280 29 H -0.286 1.286 30 H -0.271 1.271 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.169 0.831 43 H 0.008 0.992 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -0.975 -15.346 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.298 3.702 4 O -0.374 6.374 5 C 0.041 3.959 6 H 0.162 0.838 7 C -0.115 4.115 8 H 0.118 0.882 9 C -0.208 4.208 10 C -0.110 4.110 11 C -0.126 4.126 12 C -0.120 4.120 13 C -0.172 4.172 14 C -0.123 4.123 15 C -0.171 4.171 16 C 0.087 3.913 17 N -0.273 5.273 18 C 0.318 3.682 19 O -0.379 6.379 20 C 0.010 3.990 21 H 0.077 0.923 22 C -0.184 4.184 23 C -0.545 4.545 24 H 0.094 0.906 25 C -0.139 4.139 26 N -0.531 5.531 27 Si 0.728 3.272 28 H -0.206 1.206 29 H -0.212 1.212 30 H -0.196 1.196 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.186 0.814 43 H 0.027 0.973 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.803 -0.312 -14.957 16.434 hybrid contribution 0.053 0.255 0.786 0.828 sum -6.750 -0.057 -14.171 15.696 Atomic orbital electron populations 1.23244 0.76702 1.03539 1.02422 1.86550 1.23092 1.33089 1.84137 1.23956 0.92047 0.81763 0.72474 1.90690 1.66540 1.36209 1.43933 1.21129 0.87614 0.87351 0.99837 0.83795 1.21467 1.02073 0.96608 0.91345 0.88162 1.21887 1.02670 0.94394 1.01802 1.20481 1.00954 0.90745 0.98803 1.19310 1.06179 0.95431 0.91712 1.20698 1.00786 0.91941 0.98577 1.20921 1.03991 0.96447 0.95840 1.21057 0.99258 0.98590 0.93355 1.22302 1.01051 0.90187 1.03600 1.17759 0.97371 0.87582 0.88566 1.45979 1.60387 1.06261 1.14661 1.22395 0.73612 0.92286 0.79866 1.90343 1.44709 1.26928 1.75958 1.18981 0.96150 0.91003 0.92846 0.92333 1.21729 0.94614 1.02607 0.99429 1.21045 1.28538 0.99532 1.05367 0.90605 1.24934 0.95801 0.94623 0.98491 1.69921 1.46538 1.02123 1.34526 0.86424 0.79861 0.78264 0.82652 1.20605 1.21191 1.19597 0.92210 0.88073 0.91868 0.91642 0.91099 0.91630 0.89856 0.91139 0.86487 0.86734 0.86264 0.81420 0.97303 0.89575 0.94230 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.55 101.05 1.07 1.45 16 2 O -0.35 -4.96 8.99 -39.26 -0.35 -5.31 16 3 C 0.46 7.57 3.53 36.01 0.13 7.70 16 4 O -0.49 -9.37 15.16 -18.74 -0.28 -9.65 16 5 C 0.15 2.42 1.87 -68.63 -0.13 2.30 16 6 H 0.14 2.42 5.65 -51.93 -0.29 2.12 16 7 C -0.10 -1.24 2.67 -90.49 -0.24 -1.48 16 8 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 9 C -0.15 -1.50 8.85 37.15 0.33 -1.17 16 10 C -0.07 -0.93 4.57 -28.02 -0.13 -1.06 16 11 C -0.12 -1.97 5.44 -104.45 -0.57 -2.53 16 12 C -0.10 -1.43 9.66 -39.52 -0.38 -1.81 16 13 C -0.15 -2.16 10.04 -39.60 -0.40 -2.56 16 14 C -0.10 -1.67 10.05 -39.63 -0.40 -2.07 16 15 C -0.15 -2.95 8.89 -39.36 -0.35 -3.30 16 16 C 0.18 3.46 5.40 -83.63 -0.45 3.01 16 17 N -0.55 -10.82 2.43 -107.04 -0.26 -11.08 16 18 C 0.52 12.15 6.80 -10.98 -0.07 12.07 16 19 O -0.51 -12.78 12.19 5.56 0.07 -12.71 16 20 C 0.03 0.75 1.67 -92.92 -0.16 0.60 16 21 H 0.06 1.42 6.59 -51.93 -0.34 1.08 16 22 C -0.13 -2.90 8.82 37.16 0.33 -2.58 16 23 C -0.51 -13.87 8.30 -34.44 -0.29 -14.16 16 24 H 0.08 2.19 6.82 -52.49 -0.36 1.83 16 25 C 0.06 1.70 5.27 -17.82 -0.09 1.61 16 26 N -0.89 -24.13 11.97 55.43 0.66 -23.46 16 27 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.06 0.66 6.33 -51.92 -0.33 0.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.07 0.91 7.39 -51.93 -0.38 0.53 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.17 3.66 4.93 -53.90 -0.27 3.40 16 43 H 0.01 0.17 5.24 -51.93 -0.27 -0.10 16 44 H 0.09 2.10 6.77 -51.93 -0.35 1.75 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -31.68 361.29 -7.93 -39.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.38 Total: 4.96 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.80 Total: -3.99 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.40 Total: -34.55 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.57 Total: -27.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.68 -7.93 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361758472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.558 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds