Wall clock time and date at job start Tue Mar 31 2020 17:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99537 * 2 1 4 4 O 1.20819 * 120.00133 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99335 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.78584 * 319.19530 * 5 3 2 7 7 C 1.53422 * 109.79622 * 79.99961 * 5 3 2 8 8 H 1.09006 * 109.56837 * 176.29644 * 7 5 3 9 9 C 1.52991 * 109.57399 * 296.54091 * 7 5 3 10 10 C 1.52844 * 108.86362 * 56.36000 * 7 5 3 11 11 C 1.50592 * 110.50581 * 51.40524 * 10 7 5 12 12 C 1.38513 * 118.92986 * 159.48003 * 11 10 7 13 13 C 1.38117 * 120.30194 * 179.53382 * 12 11 10 14 14 C 1.38303 * 120.15486 * 0.07212 * 13 12 11 15 15 C 1.38034 * 119.90635 * 0.07419 * 14 13 12 16 16 C 1.38566 * 121.50359 * 339.26714 * 11 10 7 17 17 N 1.40175 * 120.81646 * 0.53380 * 16 11 10 18 18 C 1.34783 * 120.55072 * 166.46528 * 17 16 11 19 19 O 1.21282 * 120.00178 * 355.49257 * 18 17 16 20 20 C 1.50699 * 119.99557 * 175.49304 * 18 17 16 21 21 H 1.09003 * 109.47357 * 46.57670 * 20 18 17 22 22 C 1.53003 * 109.47269 * 286.57512 * 20 18 17 23 23 C 1.50701 * 109.46846 * 166.57667 * 20 18 17 24 24 H 1.07997 * 120.00356 * 5.24293 * 23 20 18 25 25 C 1.37879 * 120.00117 * 185.24707 * 23 20 18 26 26 N 1.31516 * 119.99620 * 5.54977 * 25 23 20 27 27 Si 1.86802 * 120.00225 * 185.55445 * 25 23 20 28 28 H 1.48500 * 109.46961 * 94.99671 * 27 25 23 29 29 H 1.48500 * 109.47072 * 214.99375 * 27 25 23 30 30 H 1.48495 * 109.46910 * 334.99610 * 27 25 23 31 31 H 1.08996 * 109.47589 * 60.00396 * 1 2 3 32 32 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47399 * 299.99901 * 1 2 3 34 34 H 1.09008 * 109.47112 * 60.00388 * 9 7 5 35 35 H 1.09005 * 109.47740 * 300.00604 * 9 7 5 36 36 H 1.08998 * 109.47988 * 180.02562 * 9 7 5 37 37 H 1.09002 * 109.26916 * 171.66987 * 10 7 5 38 38 H 1.08999 * 109.27300 * 291.13677 * 10 7 5 39 39 H 1.08003 * 119.85235 * 359.57674 * 12 11 10 40 40 H 1.07998 * 119.92336 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.05075 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.98452 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47149 * 58.04087 * 22 20 18 44 44 H 1.08994 * 109.47342 * 178.04666 * 22 20 18 45 45 H 1.09003 * 109.46757 * 298.04522 * 22 20 18 46 46 H 0.97007 * 119.99535 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9756 0.5188 0.6693 7 6 4.0977 1.0520 -1.4225 8 1 5.1808 1.1748 -1.4308 9 6 3.7384 -0.3602 -1.8884 10 6 3.4563 2.0781 -2.3562 11 6 3.6148 3.4687 -1.8006 12 6 3.5003 4.5501 -2.6585 13 6 3.6311 5.8382 -2.1774 14 6 3.8791 6.0564 -0.8344 15 6 3.9976 4.9841 0.0267 16 6 3.8671 3.6866 -0.4556 17 7 3.9946 2.6113 0.4345 18 6 4.5020 2.8002 1.6688 19 8 4.9283 3.8895 1.9892 20 6 4.5396 1.6577 2.6509 21 1 4.9288 0.7671 2.1574 22 6 3.1253 1.3795 3.1641 23 6 5.4322 2.0206 3.8096 24 1 5.8553 3.0120 3.8755 25 6 5.7087 1.0868 4.7856 26 7 5.2845 -0.1507 4.6507 27 14 6.6858 1.5794 6.2996 28 1 5.7514 1.9305 7.3991 29 1 7.5459 0.4457 6.7241 30 1 7.5367 2.7534 5.9791 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.6550 -0.4798 -1.8836 35 1 4.1875 -1.0904 -1.2150 36 1 4.1171 -0.5171 -2.8984 37 1 3.9360 2.0243 -3.3336 38 1 2.3953 1.8526 -2.4641 39 1 3.3072 4.3855 -3.7083 40 1 3.5403 6.6769 -2.8517 41 1 3.9806 7.0644 -0.4600 42 1 4.1916 5.1530 1.0756 43 1 2.4717 1.1511 2.3223 44 1 3.1473 0.5310 3.8478 45 1 2.7495 2.2585 3.6879 46 1 5.4793 -0.8078 5.3372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361758472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:47 Heat of formation + Delta-G solvation = -99.311540 kcal Electronic energy + Delta-G solvation = -30593.732668 eV Core-core repulsion = 26641.135763 eV Total energy + Delta-G solvation = -3952.596905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.83548 -41.13069 -39.71009 -38.09278 -37.33843 -35.94119 -35.23203 -32.99843 -32.44307 -30.88263 -29.31119 -27.77460 -27.35195 -27.14187 -25.24678 -23.74145 -23.11166 -22.70579 -21.12126 -20.13518 -19.08035 -18.60825 -18.15663 -17.78886 -17.66306 -17.20811 -16.89610 -16.47561 -16.16526 -15.89756 -15.43929 -15.16533 -14.80066 -14.57528 -14.50136 -14.35998 -14.24126 -14.08088 -13.69771 -13.38916 -13.27874 -13.04896 -12.96962 -12.94070 -12.85156 -12.66353 -12.55790 -12.31581 -12.27540 -12.14225 -12.02076 -11.80386 -11.68984 -11.62432 -11.24962 -11.07303 -10.58977 -10.21356 -9.62030 -8.86885 -8.24112 -6.32046 0.37320 0.49119 0.95630 1.27393 1.39252 1.40858 1.51906 1.67680 1.98504 2.41102 2.90649 3.08265 3.33209 3.50837 3.59582 3.74396 3.81362 3.97092 4.21308 4.26478 4.29502 4.31102 4.34286 4.42283 4.44651 4.54991 4.58809 4.65897 4.68629 4.69575 4.76289 4.77458 4.90330 5.02557 5.10565 5.15298 5.22281 5.27042 5.35881 5.42652 5.50322 5.52750 5.62289 5.66796 5.76030 5.99688 6.17777 6.29227 6.62267 6.74216 7.10081 7.35886 8.85279 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.005186 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.605585 B = 5398.241573 C = 6801.222588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.519 6.519 5 C 0.135 3.865 6 H 0.134 0.866 7 C -0.091 4.091 8 H 0.098 0.902 9 C -0.143 4.143 10 C -0.070 4.070 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.143 4.143 14 C -0.112 4.112 15 C -0.189 4.189 16 C 0.146 3.854 17 N -0.545 5.545 18 C 0.519 3.481 19 O -0.542 6.542 20 C 0.033 3.967 21 H 0.056 0.944 22 C -0.109 4.109 23 C -0.534 4.534 24 H 0.050 0.950 25 C 0.029 3.971 26 N -0.906 5.906 27 Si 0.955 3.045 28 H -0.275 1.275 29 H -0.272 1.272 30 H -0.279 1.279 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.022 0.978 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -1.961 -18.472 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.305 3.695 4 O -0.407 6.407 5 C 0.030 3.970 6 H 0.152 0.848 7 C -0.110 4.110 8 H 0.117 0.883 9 C -0.200 4.200 10 C -0.107 4.107 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.161 4.161 14 C -0.131 4.131 15 C -0.209 4.209 16 C 0.053 3.947 17 N -0.269 5.269 18 C 0.312 3.688 19 O -0.419 6.419 20 C 0.012 3.988 21 H 0.074 0.926 22 C -0.167 4.167 23 C -0.572 4.572 24 H 0.068 0.932 25 C -0.172 4.172 26 N -0.544 5.544 27 Si 0.781 3.219 28 H -0.200 1.200 29 H -0.196 1.196 30 H -0.204 1.204 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.534 -1.342 -18.121 19.670 hybrid contribution 0.197 0.577 1.679 1.786 sum -7.338 -0.765 -16.442 18.021 Atomic orbital electron populations 1.23600 0.74673 1.06017 1.02346 1.86544 1.24996 1.31503 1.83436 1.23866 0.91904 0.81979 0.71713 1.90678 1.67123 1.37324 1.45606 1.21454 0.88062 0.85382 1.02147 0.84821 1.21554 1.01819 0.98739 0.88901 0.88341 1.21877 1.02804 0.92070 1.03297 1.20591 1.01518 0.88530 1.00038 1.19765 1.04703 0.97964 0.90404 1.21242 0.98795 0.91172 1.00307 1.21380 1.01574 0.98062 0.95119 1.21285 0.99137 0.98354 0.94283 1.22139 1.03908 0.92118 1.02696 1.18042 0.99780 0.86923 0.89943 1.45752 1.59542 1.07944 1.13623 1.22083 0.74175 0.91348 0.81167 1.90347 1.46554 1.27771 1.77185 1.18847 0.95989 0.91399 0.92574 0.92608 1.21508 0.94503 1.01097 0.99563 1.21135 1.29927 0.98764 1.07344 0.93173 1.25542 0.96529 0.94606 1.00524 1.69970 1.46707 1.02479 1.35238 0.85583 0.78735 0.77991 0.79614 1.20030 1.19643 1.20413 0.91193 0.84317 0.93122 0.91577 0.91185 0.88701 0.86084 0.90758 0.82228 0.82880 0.84736 0.85090 0.95319 0.90865 0.95850 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.55 113.37 1.20 1.73 16 2 O -0.35 -9.34 8.99 -51.44 -0.46 -9.80 16 3 C 0.46 15.18 3.53 71.24 0.25 15.43 16 4 O -0.52 -19.99 15.16 21.99 0.33 -19.66 16 5 C 0.13 4.48 1.87 44.31 0.08 4.56 16 6 H 0.13 4.64 5.65 -2.39 -0.01 4.62 16 7 C -0.09 -2.19 2.67 -10.71 -0.03 -2.22 16 8 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 9 C -0.14 -2.44 8.85 71.98 0.64 -1.80 16 10 C -0.07 -1.57 4.57 29.76 0.14 -1.43 16 11 C -0.13 -3.77 5.44 -19.75 -0.11 -3.87 16 12 C -0.10 -2.37 9.66 22.31 0.22 -2.16 16 13 C -0.14 -3.61 10.04 22.26 0.22 -3.38 16 14 C -0.11 -3.58 10.05 22.24 0.22 -3.36 16 15 C -0.19 -7.75 8.89 22.41 0.20 -7.55 16 16 C 0.15 5.70 5.40 38.08 0.21 5.91 16 17 N -0.55 -22.44 2.43 -610.95 -1.49 -23.93 16 18 C 0.52 25.74 6.80 87.66 0.60 26.33 16 19 O -0.54 -29.85 12.19 -3.04 -0.04 -29.89 16 20 C 0.03 1.69 1.67 -12.29 -0.02 1.67 16 21 H 0.06 2.86 6.59 -2.39 -0.02 2.84 16 22 C -0.11 -5.26 8.82 71.98 0.64 -4.62 16 23 C -0.53 -30.76 8.30 25.60 0.21 -30.55 16 24 H 0.05 3.10 6.82 -2.91 -0.02 3.08 16 25 C 0.03 1.57 5.27 84.65 0.45 2.02 16 26 N -0.91 -49.60 11.97 21.45 0.26 -49.35 16 27 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 30 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 31 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 32 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 34 H 0.07 1.13 6.33 -2.38 -0.02 1.12 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 1.83 8.12 -2.39 -0.02 1.81 16 38 H 0.07 1.66 7.39 -2.39 -0.02 1.64 16 39 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.13 6.33 4.93 -25.25 -0.12 6.20 16 43 H 0.03 1.22 5.24 -2.39 -0.01 1.21 16 44 H 0.07 3.70 6.77 -2.39 -0.02 3.68 16 45 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -73.65 361.29 6.62 -67.02 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.89 Total: 22.52 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.10 Total: -3.30 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.23 Total: -73.28 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -0.17 Total: -59.35 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -73.65 6.62 -67.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361758472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.287 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds