Wall clock time and date at job start Tue Mar 31 2020 17:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00288 * 2 1 4 4 O 1.20831 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00542 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.64364 * 327.56235 * 5 3 2 7 7 C 1.55154 * 110.72192 * 204.42121 * 5 3 2 8 8 C 1.54911 * 101.58182 * 205.95784 * 7 5 3 9 9 N 1.47420 * 104.83388 * 37.01086 * 8 7 5 10 10 C 1.34772 * 125.64922 * 155.84108 * 9 8 7 11 11 O 1.21282 * 120.00112 * 180.02562 * 10 9 8 12 12 C 1.50701 * 120.00252 * 0.29129 * 10 9 8 13 13 H 1.09004 * 109.46773 * 59.72569 * 12 10 9 14 14 C 1.50705 * 109.46977 * 299.73017 * 12 10 9 15 15 H 1.08003 * 119.99732 * 124.46843 * 14 12 10 16 16 C 1.37875 * 120.00108 * 304.47019 * 14 12 10 17 17 N 1.31509 * 120.00041 * 6.18881 * 16 14 12 18 18 Si 1.86799 * 120.00113 * 186.19151 * 16 14 12 19 19 H 1.48495 * 109.47406 * 89.99773 * 18 16 14 20 20 H 1.48497 * 109.47086 * 209.99917 * 18 16 14 21 21 H 1.48504 * 109.47048 * 329.99940 * 18 16 14 22 22 C 1.50697 * 109.47243 * 179.73043 * 12 10 9 23 23 C 1.38234 * 119.99935 * 313.34811 * 22 12 10 24 24 C 1.38240 * 119.99839 * 179.76986 * 23 22 12 25 25 C 1.38235 * 119.99836 * 0.50217 * 24 23 22 26 26 C 1.38236 * 120.00102 * 359.75300 * 25 24 23 27 27 C 1.38228 * 119.99797 * 359.97438 * 26 25 24 28 28 C 1.47022 * 108.70210 * 336.09640 * 9 8 7 29 29 H 1.09004 * 109.88647 * 241.41852 * 28 9 8 30 30 C 1.53003 * 109.88343 * 120.25153 * 28 9 8 31 31 H 1.08992 * 109.47540 * 300.00174 * 1 2 3 32 32 H 1.08998 * 109.46846 * 60.00695 * 1 2 3 33 33 H 1.09006 * 109.46834 * 180.02562 * 1 2 3 34 34 H 1.09002 * 111.00784 * 87.88050 * 7 5 3 35 35 H 1.09004 * 111.00372 * 324.02780 * 7 5 3 36 36 H 1.09000 * 110.36535 * 278.16863 * 8 7 5 37 37 H 1.09007 * 110.45986 * 155.89318 * 8 7 5 38 38 H 0.97002 * 120.00531 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00261 * 359.97438 * 23 22 12 40 40 H 1.07995 * 120.00198 * 180.23185 * 24 23 22 41 41 H 1.08003 * 119.99772 * 179.72288 * 25 24 23 42 42 H 1.08005 * 119.99716 * 179.97438 * 26 25 24 43 43 H 1.08008 * 119.99831 * 179.97438 * 27 26 25 44 44 H 1.08996 * 109.46776 * 64.32168 * 30 28 9 45 45 H 1.08997 * 109.47513 * 184.32921 * 30 28 9 46 46 H 1.09007 * 109.46972 * 304.32783 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9949 0.4355 0.5480 7 6 4.0451 2.6233 0.6005 8 6 5.4244 2.7955 -0.0832 9 7 5.2362 2.2746 -1.4494 10 6 5.9701 2.6143 -2.5275 11 8 5.7248 2.1209 -3.6080 12 6 7.0994 3.6026 -2.3895 13 1 7.8313 3.2208 -1.6778 14 6 6.5572 4.9189 -1.8951 15 1 6.9616 5.3673 -0.9996 16 6 5.5450 5.5508 -2.5858 17 7 4.9693 4.9501 -3.6042 18 14 4.9914 7.2603 -2.0752 19 1 5.7884 8.2777 -2.8063 20 1 3.5525 7.4320 -2.3995 21 1 5.1932 7.4300 -0.6138 22 6 7.7586 3.8025 -3.7298 23 6 8.0847 2.7087 -4.5096 24 6 8.6852 2.8923 -5.7412 25 6 8.9689 4.1692 -6.1883 26 6 8.6475 5.2627 -5.4062 27 6 8.0420 5.0794 -4.1772 28 6 4.1114 1.3279 -1.4422 29 1 4.4574 0.3388 -1.7422 30 6 3.0180 1.8116 -2.3968 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.1515 2.5535 1.6830 35 1 3.3697 3.4342 0.3273 36 1 6.1834 2.2161 0.4426 37 1 5.7056 3.8483 -0.1140 38 1 4.2574 5.3947 -4.0905 39 1 7.8675 1.7109 -4.1582 40 1 8.9366 2.0379 -6.3521 41 1 9.4421 4.3124 -7.1486 42 1 8.8696 6.2604 -5.7554 43 1 7.7913 5.9338 -3.5659 44 1 3.3998 1.8087 -3.4178 45 1 2.1565 1.1474 -2.3291 46 1 2.7188 2.8236 -2.1238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362924119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:14 Heat of formation + Delta-G solvation = -86.289924 kcal Electronic energy + Delta-G solvation = -30025.899354 eV Core-core repulsion = 26073.867108 eV Total energy + Delta-G solvation = -3952.032246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77952 -39.22392 -38.05930 -36.65343 -35.91362 -33.69671 -31.46552 -30.88019 -30.52521 -29.70746 -28.09667 -27.14683 -25.77056 -24.06669 -22.71826 -22.12781 -21.28756 -20.42731 -19.49714 -18.32471 -17.41756 -16.96777 -16.53360 -16.26960 -15.87278 -15.38565 -14.90776 -14.84720 -14.36370 -13.76866 -13.67034 -13.65393 -13.41756 -13.04193 -12.80842 -12.50834 -12.32224 -12.17147 -12.08943 -12.01269 -11.93079 -11.52999 -11.47210 -11.28259 -11.01953 -10.88874 -10.80041 -10.76887 -10.58975 -10.50906 -10.29081 -10.15889 -10.05080 -9.68955 -9.38185 -8.71554 -8.24684 -7.72197 -7.61541 -7.42391 -6.15477 -4.27388 2.27340 2.51595 2.57843 2.71933 3.20876 3.29886 3.31679 3.95287 4.19899 4.36302 4.62481 4.79872 4.95872 4.99141 5.03172 5.10903 5.13825 5.25073 5.44481 5.53546 5.69660 5.80382 5.83816 5.92248 5.95721 6.00436 6.03795 6.14860 6.29667 6.39647 6.44508 6.54406 6.58955 6.64981 6.68515 6.75040 6.85537 6.98660 7.11221 7.17679 7.39983 7.53185 7.61808 7.67855 7.77222 7.83424 8.13584 8.24744 8.61044 8.79402 9.36266 9.69177 10.86029 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004405 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.294552 B = 6354.599047 C = 7337.322234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.478 3.522 4 O -0.500 6.500 5 C -0.097 4.097 6 H 0.110 0.890 7 C -0.119 4.119 8 C 0.101 3.899 9 N -0.611 5.611 10 C 0.574 3.426 11 O -0.543 6.543 12 C 0.061 3.939 13 H 0.056 0.944 14 C -0.540 4.540 15 H 0.068 0.932 16 C 0.079 3.921 17 N -0.836 5.836 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.016 4.016 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.073 4.073 28 C 0.160 3.840 29 H 0.072 0.928 30 C -0.160 4.160 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.265 0.735 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -7.482 7.365 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.321 3.679 4 O -0.386 6.386 5 C -0.117 4.117 6 H 0.128 0.872 7 C -0.157 4.157 8 C -0.023 4.023 9 N -0.348 5.348 10 C 0.366 3.634 11 O -0.419 6.419 12 C 0.040 3.960 13 H 0.074 0.926 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.468 5.468 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.196 1.196 22 C -0.017 4.017 23 C -0.117 4.117 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.165 4.165 27 C -0.091 4.091 28 C 0.055 3.945 29 H 0.090 0.910 30 C -0.218 4.218 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.146 0.854 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.264 -7.413 6.512 10.123 hybrid contribution -1.057 1.030 0.080 1.478 sum -3.320 -6.383 6.593 9.758 Atomic orbital electron populations 1.23225 0.76775 1.03396 1.02497 1.86527 1.23124 1.33830 1.84359 1.23395 0.91646 0.81219 0.71682 1.90670 1.66861 1.36255 1.44821 1.22226 0.87285 1.02070 1.00100 0.87192 1.22879 0.98283 0.94896 0.99630 1.22443 0.94491 1.03091 0.82241 1.48285 1.32657 1.44691 1.09141 1.20739 0.82780 0.78792 0.81055 1.90524 1.70707 1.54845 1.25851 1.17845 0.91230 0.94929 0.91987 0.92568 1.20587 1.20818 1.04110 1.12160 0.91373 1.25006 0.95757 0.97465 0.94742 1.70002 1.22296 1.36275 1.18221 0.86745 0.78143 0.85056 0.79193 1.20348 1.21256 1.19581 1.19853 0.93431 0.92215 0.96214 1.21002 0.97407 0.98772 0.94538 1.20841 1.02100 0.96179 0.96989 1.20787 1.03119 0.93244 0.99139 1.21000 1.02006 0.97414 0.96083 1.21181 0.95172 0.98094 0.94612 1.21058 0.88499 0.94159 0.90795 0.90967 1.22184 0.96240 1.01169 1.02192 0.92067 0.91931 0.88309 0.90161 0.89022 0.92896 0.86869 0.92430 0.87363 0.88054 0.88175 0.88002 0.85382 0.89929 0.94288 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.77 10.56 -39.26 -0.41 -5.19 16 3 C 0.48 7.25 4.98 36.00 0.18 7.43 16 4 O -0.50 -8.90 14.92 -18.75 -0.28 -9.18 16 5 C -0.10 -1.39 3.38 -89.94 -0.30 -1.69 16 6 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.12 -1.74 6.39 -24.58 -0.16 -1.90 16 8 C 0.10 1.66 6.59 -2.53 -0.02 1.64 16 9 N -0.61 -12.10 3.08 -163.02 -0.50 -12.60 16 10 C 0.57 13.30 5.11 -10.99 -0.06 13.24 16 11 O -0.54 -14.11 12.79 5.56 0.07 -14.04 16 12 C 0.06 1.40 2.32 -94.07 -0.22 1.18 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.54 -12.58 4.79 -34.44 -0.17 -12.75 16 15 H 0.07 1.53 7.70 -52.48 -0.40 1.13 16 16 C 0.08 1.95 3.92 -17.82 -0.07 1.88 16 17 N -0.84 -22.33 11.12 55.43 0.62 -21.72 16 18 Si 0.88 19.68 29.54 -169.99 -5.02 14.66 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.02 -0.38 4.63 -104.63 -0.48 -0.86 16 23 C -0.10 -2.21 8.21 -39.58 -0.32 -2.53 16 24 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 25 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.15 -3.02 10.05 -39.59 -0.40 -3.42 16 27 C -0.07 -1.66 8.47 -39.59 -0.34 -1.99 16 28 C 0.16 2.82 3.42 -66.95 -0.23 2.59 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 C -0.16 -3.16 8.07 37.16 0.30 -2.86 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.59 7.23 -51.93 -0.38 1.21 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 2.09 5.51 -51.92 -0.29 1.80 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 2.40 6.97 -52.49 -0.37 2.03 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.13 3.00 6.07 -52.48 -0.32 2.68 16 44 H 0.08 1.88 6.84 -51.93 -0.36 1.52 16 45 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 46 H 0.06 1.46 7.80 -51.93 -0.41 1.05 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -30.15 366.95 -8.66 -38.81 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.65 Total: 8.85 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.01 Total: -5.13 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.11 Total: -34.32 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.62 Total: -28.40 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.15 -8.66 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362924119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.481 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds