Wall clock time and date at job start Tue Mar 31 2020 17:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00288 * 2 1 4 4 O 1.20831 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00542 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.64364 * 327.56235 * 5 3 2 7 7 C 1.55154 * 110.72192 * 204.42121 * 5 3 2 8 8 C 1.54911 * 101.58182 * 205.95784 * 7 5 3 9 9 N 1.47420 * 104.83388 * 37.01086 * 8 7 5 10 10 C 1.34772 * 125.64922 * 155.84108 * 9 8 7 11 11 O 1.21282 * 120.00112 * 180.02562 * 10 9 8 12 12 C 1.50701 * 120.00252 * 0.29129 * 10 9 8 13 13 H 1.09004 * 109.46773 * 59.72569 * 12 10 9 14 14 C 1.50705 * 109.46977 * 299.73017 * 12 10 9 15 15 H 1.08003 * 119.99732 * 124.46843 * 14 12 10 16 16 C 1.37875 * 120.00108 * 304.47019 * 14 12 10 17 17 N 1.31509 * 120.00041 * 6.18881 * 16 14 12 18 18 Si 1.86799 * 120.00113 * 186.19151 * 16 14 12 19 19 H 1.48495 * 109.47406 * 89.99773 * 18 16 14 20 20 H 1.48497 * 109.47086 * 209.99917 * 18 16 14 21 21 H 1.48504 * 109.47048 * 329.99940 * 18 16 14 22 22 C 1.50697 * 109.47243 * 179.73043 * 12 10 9 23 23 C 1.38234 * 119.99935 * 313.34811 * 22 12 10 24 24 C 1.38240 * 119.99839 * 179.76986 * 23 22 12 25 25 C 1.38235 * 119.99836 * 0.50217 * 24 23 22 26 26 C 1.38236 * 120.00102 * 359.75300 * 25 24 23 27 27 C 1.38228 * 119.99797 * 359.97438 * 26 25 24 28 28 C 1.47022 * 108.70210 * 336.09640 * 9 8 7 29 29 H 1.09004 * 109.88647 * 241.41852 * 28 9 8 30 30 C 1.53003 * 109.88343 * 120.25153 * 28 9 8 31 31 H 1.08992 * 109.47540 * 300.00174 * 1 2 3 32 32 H 1.08998 * 109.46846 * 60.00695 * 1 2 3 33 33 H 1.09006 * 109.46834 * 180.02562 * 1 2 3 34 34 H 1.09002 * 111.00784 * 87.88050 * 7 5 3 35 35 H 1.09004 * 111.00372 * 324.02780 * 7 5 3 36 36 H 1.09000 * 110.36535 * 278.16863 * 8 7 5 37 37 H 1.09007 * 110.45986 * 155.89318 * 8 7 5 38 38 H 0.97002 * 120.00531 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00261 * 359.97438 * 23 22 12 40 40 H 1.07995 * 120.00198 * 180.23185 * 24 23 22 41 41 H 1.08003 * 119.99772 * 179.72288 * 25 24 23 42 42 H 1.08005 * 119.99716 * 179.97438 * 26 25 24 43 43 H 1.08008 * 119.99831 * 179.97438 * 27 26 25 44 44 H 1.08996 * 109.46776 * 64.32168 * 30 28 9 45 45 H 1.08997 * 109.47513 * 184.32921 * 30 28 9 46 46 H 1.09007 * 109.46972 * 304.32783 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9949 0.4355 0.5480 7 6 4.0451 2.6233 0.6005 8 6 5.4244 2.7955 -0.0832 9 7 5.2362 2.2746 -1.4494 10 6 5.9701 2.6143 -2.5275 11 8 5.7248 2.1209 -3.6080 12 6 7.0994 3.6026 -2.3895 13 1 7.8313 3.2208 -1.6778 14 6 6.5572 4.9189 -1.8951 15 1 6.9616 5.3673 -0.9996 16 6 5.5450 5.5508 -2.5858 17 7 4.9693 4.9501 -3.6042 18 14 4.9914 7.2603 -2.0752 19 1 5.7884 8.2777 -2.8063 20 1 3.5525 7.4320 -2.3995 21 1 5.1932 7.4300 -0.6138 22 6 7.7586 3.8025 -3.7298 23 6 8.0847 2.7087 -4.5096 24 6 8.6852 2.8923 -5.7412 25 6 8.9689 4.1692 -6.1883 26 6 8.6475 5.2627 -5.4062 27 6 8.0420 5.0794 -4.1772 28 6 4.1114 1.3279 -1.4422 29 1 4.4574 0.3388 -1.7422 30 6 3.0180 1.8116 -2.3968 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.1515 2.5535 1.6830 35 1 3.3697 3.4342 0.3273 36 1 6.1834 2.2161 0.4426 37 1 5.7056 3.8483 -0.1140 38 1 4.2574 5.3947 -4.0905 39 1 7.8675 1.7109 -4.1582 40 1 8.9366 2.0379 -6.3521 41 1 9.4421 4.3124 -7.1486 42 1 8.8696 6.2604 -5.7554 43 1 7.7913 5.9338 -3.5659 44 1 3.3998 1.8087 -3.4178 45 1 2.1565 1.1474 -2.3291 46 1 2.7188 2.8236 -2.1238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362924119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:13 Heat of formation + Delta-G solvation = -102.234254 kcal Electronic energy + Delta-G solvation = -30026.590752 eV Core-core repulsion = 26073.867108 eV Total energy + Delta-G solvation = -3952.723644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01604 -40.78277 -39.56970 -38.07890 -37.27214 -35.51951 -33.04635 -32.48758 -32.02061 -31.35818 -29.26193 -28.70484 -27.08575 -25.87128 -24.19126 -23.40561 -22.94448 -21.98896 -20.78847 -19.91288 -18.74611 -18.56475 -17.73490 -17.52046 -17.28523 -17.08721 -16.69982 -16.32613 -15.92733 -15.39521 -15.29949 -15.10889 -14.62908 -14.35877 -14.23485 -14.03275 -13.98594 -13.69892 -13.63919 -13.49008 -13.14199 -13.07477 -12.92288 -12.87201 -12.77141 -12.53356 -12.38882 -12.18851 -11.93434 -11.79388 -11.76412 -11.67135 -11.47255 -11.38922 -11.14521 -10.61613 -10.05184 -9.38393 -9.20199 -9.09402 -8.07052 -6.19600 0.87228 0.91885 1.07912 1.39389 1.44908 1.49768 1.66155 2.31358 2.43251 2.68482 3.22014 3.32375 3.41129 3.54665 3.82652 4.11357 4.22025 4.28845 4.30138 4.32382 4.34589 4.36040 4.42282 4.48722 4.50359 4.59441 4.68758 4.72844 4.77737 4.93241 4.97670 5.01565 5.08040 5.15193 5.20285 5.27946 5.31154 5.39842 5.46490 5.53805 5.71790 5.87280 5.90874 5.96071 5.99111 6.42743 6.52816 6.69762 6.78435 7.10405 7.45003 7.96059 8.92621 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004405 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.294552 B = 6354.599047 C = 7337.322234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.480 3.520 4 O -0.532 6.532 5 C -0.085 4.085 6 H 0.154 0.846 7 C -0.111 4.111 8 C 0.096 3.904 9 N -0.616 5.616 10 C 0.571 3.429 11 O -0.581 6.581 12 C 0.054 3.946 13 H 0.069 0.931 14 C -0.522 4.522 15 H 0.076 0.924 16 C 0.046 3.954 17 N -0.868 5.868 18 Si 0.926 3.074 19 H -0.276 1.276 20 H -0.305 1.305 21 H -0.256 1.256 22 C -0.037 4.037 23 C -0.116 4.116 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.095 4.095 28 C 0.154 3.846 29 H 0.083 0.917 30 C -0.142 4.142 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -8.671 8.784 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.324 3.676 4 O -0.421 6.421 5 C -0.105 4.105 6 H 0.172 0.828 7 C -0.149 4.149 8 C -0.026 4.026 9 N -0.351 5.351 10 C 0.363 3.637 11 O -0.460 6.460 12 C 0.032 3.968 13 H 0.087 0.913 14 C -0.559 4.559 15 H 0.094 0.906 16 C -0.159 4.159 17 N -0.502 5.502 18 Si 0.753 3.247 19 H -0.202 1.202 20 H -0.232 1.232 21 H -0.180 1.180 22 C -0.038 4.038 23 C -0.134 4.134 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.113 4.113 28 C 0.050 3.950 29 H 0.101 0.899 30 C -0.201 4.201 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.493 -8.605 7.995 11.841 hybrid contribution -1.307 1.343 -0.361 1.908 sum -2.800 -7.263 7.634 10.903 Atomic orbital electron populations 1.23552 0.74965 1.05784 1.02314 1.86514 1.24863 1.32475 1.83685 1.23517 0.91947 0.81287 0.70896 1.90671 1.67647 1.37484 1.46305 1.22226 0.87009 1.03484 0.97755 0.82833 1.22823 0.96137 0.94017 1.01924 1.22620 0.96721 1.02328 0.80982 1.48301 1.32393 1.44658 1.09756 1.20711 0.83138 0.78611 0.81269 1.90489 1.71782 1.56252 1.27480 1.17948 0.91598 0.94719 0.92487 0.91342 1.20759 1.19574 1.04031 1.11572 0.90624 1.25457 0.96107 0.99554 0.94737 1.70173 1.23032 1.37139 1.19880 0.86041 0.76510 0.82533 0.79649 1.20209 1.23211 1.18010 1.19975 0.94193 0.92835 0.96805 1.21062 0.98460 0.98197 0.95689 1.21210 1.01004 0.97762 0.96362 1.21185 1.02137 0.92402 1.00242 1.21319 1.01142 0.99189 0.95291 1.21178 0.96795 0.97451 0.95872 1.21186 0.87217 0.93860 0.92722 0.89894 1.21969 0.97639 0.99821 1.00630 0.91538 0.92926 0.84660 0.85927 0.92315 0.89255 0.89080 0.93910 0.88097 0.85276 0.84478 0.85625 0.86829 0.93636 0.92452 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.60 10.56 -51.43 -0.54 -9.14 16 3 C 0.48 13.76 4.98 71.23 0.35 14.11 16 4 O -0.53 -18.78 14.92 21.95 0.33 -18.45 16 5 C -0.09 -2.23 3.38 -10.36 -0.04 -2.27 16 6 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 7 C -0.11 -3.02 6.39 31.99 0.20 -2.82 16 8 C 0.10 3.01 6.59 86.86 0.57 3.58 16 9 N -0.62 -24.33 3.08 -788.05 -2.42 -26.76 16 10 C 0.57 27.00 5.11 87.66 0.45 27.45 16 11 O -0.58 -31.30 12.79 -3.03 -0.04 -31.34 16 12 C 0.05 2.48 2.32 -13.03 -0.03 2.45 16 13 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 14 C -0.52 -24.62 4.79 25.60 0.12 -24.50 16 15 H 0.08 3.39 7.70 -2.91 -0.02 3.36 16 16 C 0.05 2.33 3.92 84.65 0.33 2.66 16 17 N -0.87 -48.39 11.12 21.45 0.24 -48.15 16 18 Si 0.93 41.23 29.54 68.60 2.03 43.26 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 22 C -0.04 -1.76 4.63 -19.87 -0.09 -1.85 16 23 C -0.12 -5.21 8.21 22.27 0.18 -5.02 16 24 C -0.15 -5.70 10.05 22.27 0.22 -5.47 16 25 C -0.14 -5.23 10.05 22.27 0.22 -5.01 16 26 C -0.15 -6.07 10.05 22.27 0.22 -5.85 16 27 C -0.09 -4.38 8.47 22.27 0.19 -4.19 16 28 C 0.15 5.37 3.42 45.34 0.15 5.52 16 29 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 30 C -0.14 -5.82 8.07 71.98 0.58 -5.24 16 31 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.02 7.23 -2.39 -0.02 2.00 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 3.30 5.51 -2.38 -0.01 3.29 16 38 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.10 4.58 6.97 -2.91 -0.02 4.56 16 40 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.11 5.44 6.07 -2.91 -0.02 5.42 16 44 H 0.04 2.18 6.84 -2.39 -0.02 2.16 16 45 H 0.06 2.05 6.90 -2.39 -0.02 2.03 16 46 H 0.03 1.57 7.80 -2.38 -0.02 1.55 16 Total: -1.00 -69.19 366.95 5.42 -63.77 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.98 Total: 31.58 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.85 Total: -4.76 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.19 Total: -74.91 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.25 Total: -58.94 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -69.19 5.42 -63.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362924119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.464 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds