Wall clock time and date at job start Tue Mar 31 2020 17:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99809 * 2 1 4 4 O 1.20828 * 119.99775 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00114 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.77758 * 56.75954 * 5 3 2 7 7 C 1.55164 * 110.71988 * 293.52119 * 5 3 2 8 8 C 1.55124 * 101.48362 * 205.96954 * 7 5 3 9 9 N 1.47427 * 104.72588 * 37.29610 * 8 7 5 10 10 C 1.34779 * 125.64820 * 155.82082 * 9 8 7 11 11 O 1.21283 * 119.99601 * 179.69223 * 10 9 8 12 12 C 1.50693 * 120.00209 * 359.68541 * 10 9 8 13 13 H 1.09003 * 109.47109 * 300.00794 * 12 10 9 14 14 C 1.50698 * 109.47001 * 60.00494 * 12 10 9 15 15 H 1.08005 * 120.00122 * 235.43783 * 14 12 10 16 16 C 1.37873 * 120.00257 * 55.43288 * 14 12 10 17 17 N 1.31523 * 119.99796 * 2.16924 * 16 14 12 18 18 Si 1.86798 * 120.00685 * 182.16533 * 16 14 12 19 19 H 1.48498 * 109.47112 * 89.99974 * 18 16 14 20 20 H 1.48494 * 109.47765 * 210.00415 * 18 16 14 21 21 H 1.48508 * 109.46971 * 330.00360 * 18 16 14 22 22 C 1.50698 * 109.47512 * 180.02562 * 12 10 9 23 23 C 1.38231 * 119.99772 * 47.18566 * 22 12 10 24 24 C 1.38235 * 120.00191 * 180.02562 * 23 22 12 25 25 C 1.38244 * 119.99614 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99970 * 0.02562 * 25 24 23 27 27 C 1.38235 * 120.00415 * 359.97438 * 26 25 24 28 28 C 1.47019 * 108.69959 * 335.55068 * 9 8 7 29 29 H 1.09006 * 109.88003 * 120.86139 * 28 9 8 30 30 C 1.53002 * 109.88312 * 241.86901 * 28 9 8 31 31 H 1.09000 * 109.47208 * 300.00053 * 1 2 3 32 32 H 1.09000 * 109.47214 * 60.00732 * 1 2 3 33 33 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 34 34 H 1.08999 * 110.99965 * 324.20950 * 7 5 3 35 35 H 1.08992 * 110.99826 * 88.02285 * 7 5 3 36 36 H 1.09006 * 110.49961 * 278.45539 * 8 7 5 37 37 H 1.09001 * 110.34084 * 156.05944 * 8 7 5 38 38 H 0.96999 * 119.99635 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.00307 * 359.97438 * 23 22 12 40 40 H 1.07995 * 120.00498 * 179.70548 * 24 23 22 41 41 H 1.08006 * 119.99920 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.99782 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.00169 * 180.02562 * 27 26 25 44 44 H 1.08994 * 109.47083 * 58.54965 * 30 28 9 45 45 H 1.08996 * 109.46939 * 178.54993 * 30 28 9 46 46 H 1.09003 * 109.46905 * 298.54978 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9820 0.7372 -0.8515 7 6 4.1443 0.7256 1.3316 8 6 5.4939 1.4854 1.4192 9 7 5.2011 2.8311 0.8929 10 6 5.8911 3.9532 1.1779 11 8 5.5626 5.0097 0.6810 12 6 7.0705 3.8953 2.1142 13 1 6.7434 3.5325 3.0886 14 6 8.1113 2.9606 1.5537 15 1 8.4687 2.1320 2.1471 16 6 8.6072 3.1631 0.2833 17 7 8.2036 4.1965 -0.4232 18 14 9.8525 1.9701 -0.4346 19 1 9.1397 0.8843 -1.1546 20 1 10.7408 2.6915 -1.3809 21 1 10.6669 1.3858 0.6612 22 6 7.6611 5.2735 2.2641 23 6 6.8365 6.3562 2.5062 24 6 7.3781 7.6206 2.6432 25 6 8.7446 7.8022 2.5387 26 6 9.5691 6.7195 2.2967 27 6 9.0275 5.4551 2.1596 28 6 4.0359 2.7450 0.0005 29 1 3.2389 3.3913 0.3682 30 6 4.4335 3.1641 -1.4163 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.4961 0.9755 2.1716 35 1 4.3063 -0.3506 1.2724 36 1 6.2490 0.9941 0.8055 37 1 5.8272 1.5475 2.4551 38 1 8.5522 4.3387 -1.3171 39 1 5.7689 6.2144 2.5874 40 1 6.7334 8.4672 2.8276 41 1 9.1678 8.7902 2.6454 42 1 10.6367 6.8614 2.2155 43 1 9.6718 4.6092 1.9709 44 1 5.2357 2.5189 -1.7744 45 1 3.5716 3.0732 -2.0773 46 1 4.7763 4.1987 -1.4064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362924123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:18 Heat of formation + Delta-G solvation = -88.051491 kcal Electronic energy + Delta-G solvation = -29750.644609 eV Core-core repulsion = 25798.535976 eV Total energy + Delta-G solvation = -3952.108633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76318 -39.25932 -38.05071 -36.66924 -36.06013 -33.66763 -31.44056 -31.05025 -30.55803 -29.64537 -28.14035 -27.13385 -25.84423 -24.00793 -22.54687 -22.05162 -21.24773 -20.57643 -19.73706 -18.33378 -17.57648 -16.95777 -16.68498 -16.30405 -15.66859 -15.32202 -15.04536 -14.81563 -14.14643 -13.85720 -13.72733 -13.65198 -13.44241 -13.19775 -12.75597 -12.63163 -12.39757 -12.34535 -12.12483 -11.99407 -11.96918 -11.56533 -11.35922 -11.31618 -11.08341 -10.94045 -10.91119 -10.77215 -10.67078 -10.49548 -10.40934 -10.21269 -10.02654 -9.64846 -9.36095 -8.69160 -8.26845 -7.67317 -7.61310 -7.37492 -6.12304 -4.27548 2.17134 2.54155 2.61372 2.64504 3.17788 3.28534 3.28949 3.96346 4.19498 4.34691 4.51925 4.66926 4.83727 4.94748 5.02068 5.04051 5.14074 5.21715 5.36553 5.52008 5.58704 5.81728 5.88011 5.88577 5.99831 6.02805 6.07781 6.16731 6.26593 6.29209 6.31109 6.48396 6.54264 6.64678 6.70778 6.77728 6.87869 6.94935 7.16060 7.22494 7.36722 7.58117 7.66713 7.69601 7.71283 7.80815 8.18934 8.29083 8.60454 8.79642 9.37383 9.67377 10.88031 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.004212 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.689677 B = 6645.654656 C = 7795.082610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.501 6.501 5 C -0.095 4.095 6 H 0.120 0.880 7 C -0.124 4.124 8 C 0.123 3.877 9 N -0.616 5.616 10 C 0.570 3.430 11 O -0.540 6.540 12 C 0.062 3.938 13 H 0.055 0.945 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.076 3.924 17 N -0.839 5.839 18 Si 0.882 3.118 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.015 4.015 23 C -0.100 4.100 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.063 4.063 28 C 0.153 3.847 29 H 0.083 0.917 30 C -0.154 4.154 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -8.381 2.576 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.388 6.388 5 C -0.115 4.115 6 H 0.138 0.862 7 C -0.162 4.162 8 C -0.001 4.001 9 N -0.352 5.352 10 C 0.361 3.639 11 O -0.416 6.416 12 C 0.040 3.960 13 H 0.073 0.927 14 C -0.573 4.573 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.471 5.471 18 Si 0.709 3.291 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.016 4.016 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.081 4.081 28 C 0.048 3.952 29 H 0.101 0.899 30 C -0.212 4.212 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.146 0.854 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.637 -7.281 2.133 11.496 hybrid contribution 0.470 -0.611 -0.978 1.245 sum -8.167 -7.891 1.155 11.415 Atomic orbital electron populations 1.23249 0.76640 1.03494 1.02544 1.86517 1.23167 1.33535 1.84252 1.23565 0.91743 0.81210 0.71935 1.90675 1.66962 1.36285 1.44851 1.22193 0.86897 1.00035 1.02379 0.86248 1.22930 0.97873 1.00876 0.94546 1.22118 0.94228 0.83179 1.00545 1.48346 1.30764 1.08344 1.47795 1.20837 0.80923 0.80601 0.81503 1.90545 1.67926 1.29435 1.53674 1.17847 0.92009 0.92334 0.93769 0.92709 1.20635 1.23426 1.12871 1.00404 0.91523 1.25017 0.96214 0.94854 0.97123 1.70074 1.40910 1.25573 1.10580 0.86739 0.81646 0.81297 0.79375 1.20579 1.21204 1.19601 1.19803 0.93240 0.94803 0.93738 1.20983 0.98979 0.92614 0.99265 1.20820 0.94753 0.96752 1.03937 1.20771 0.93976 0.97593 1.03931 1.20984 0.98380 0.93765 1.03519 1.21132 0.95621 0.96065 0.95294 1.21167 0.89898 0.91877 0.92211 0.89941 1.22064 1.00153 1.04359 0.94657 0.91941 0.91977 0.88204 0.90670 0.89168 0.90867 0.90219 0.92551 0.87536 0.88143 0.88261 0.88093 0.85423 0.92635 0.93482 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.23 10.57 -39.25 -0.41 -4.65 16 3 C 0.47 6.68 7.26 36.00 0.26 6.94 16 4 O -0.50 -8.49 15.17 -18.75 -0.28 -8.78 16 5 C -0.10 -1.34 2.98 -89.94 -0.27 -1.60 16 6 H 0.12 1.50 7.85 -51.93 -0.41 1.09 16 7 C -0.12 -1.54 6.53 -24.46 -0.16 -1.70 16 8 C 0.12 1.97 5.60 -2.41 -0.01 1.95 16 9 N -0.62 -12.22 3.06 -162.88 -0.50 -12.71 16 10 C 0.57 13.35 5.32 -10.99 -0.06 13.29 16 11 O -0.54 -14.34 12.99 5.55 0.07 -14.26 16 12 C 0.06 1.41 2.13 -94.08 -0.20 1.21 16 13 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 14 C -0.54 -12.46 5.80 -34.44 -0.20 -12.66 16 15 H 0.07 1.50 7.81 -52.48 -0.41 1.09 16 16 C 0.08 1.84 3.99 -17.82 -0.07 1.77 16 17 N -0.84 -22.20 10.88 55.43 0.60 -21.59 16 18 Si 0.88 19.16 29.54 -169.99 -5.02 14.14 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.01 -0.35 4.52 -104.63 -0.47 -0.82 16 23 C -0.10 -2.29 8.21 -39.59 -0.33 -2.61 16 24 C -0.14 -3.00 10.05 -39.58 -0.40 -3.39 16 25 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.15 -3.10 10.05 -39.59 -0.40 -3.50 16 27 C -0.06 -1.46 8.19 -39.58 -0.32 -1.78 16 28 C 0.15 2.76 2.88 -66.95 -0.19 2.57 16 29 H 0.08 1.65 6.81 -51.93 -0.35 1.30 16 30 C -0.15 -2.91 9.10 37.16 0.34 -2.57 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 37 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.11 2.43 7.01 -52.49 -0.37 2.07 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 42 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.13 3.03 6.02 -52.49 -0.32 2.71 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.82 6.88 -51.93 -0.36 1.46 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -30.44 371.79 -8.53 -38.97 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.78 Total: 8.08 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.81 Total: -4.81 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.10 Total: -34.31 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.63 Total: -27.69 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.44 -8.53 -38.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362924123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.077 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds