Wall clock time and date at job start Tue Mar 31 2020 17:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99809 * 2 1 4 4 O 1.20828 * 119.99775 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00114 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.77758 * 56.75954 * 5 3 2 7 7 C 1.55164 * 110.71988 * 293.52119 * 5 3 2 8 8 C 1.55124 * 101.48362 * 205.96954 * 7 5 3 9 9 N 1.47427 * 104.72588 * 37.29610 * 8 7 5 10 10 C 1.34779 * 125.64820 * 155.82082 * 9 8 7 11 11 O 1.21283 * 119.99601 * 179.69223 * 10 9 8 12 12 C 1.50693 * 120.00209 * 359.68541 * 10 9 8 13 13 H 1.09003 * 109.47109 * 300.00794 * 12 10 9 14 14 C 1.50698 * 109.47001 * 60.00494 * 12 10 9 15 15 H 1.08005 * 120.00122 * 235.43783 * 14 12 10 16 16 C 1.37873 * 120.00257 * 55.43288 * 14 12 10 17 17 N 1.31523 * 119.99796 * 2.16924 * 16 14 12 18 18 Si 1.86798 * 120.00685 * 182.16533 * 16 14 12 19 19 H 1.48498 * 109.47112 * 89.99974 * 18 16 14 20 20 H 1.48494 * 109.47765 * 210.00415 * 18 16 14 21 21 H 1.48508 * 109.46971 * 330.00360 * 18 16 14 22 22 C 1.50698 * 109.47512 * 180.02562 * 12 10 9 23 23 C 1.38231 * 119.99772 * 47.18566 * 22 12 10 24 24 C 1.38235 * 120.00191 * 180.02562 * 23 22 12 25 25 C 1.38244 * 119.99614 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99970 * 0.02562 * 25 24 23 27 27 C 1.38235 * 120.00415 * 359.97438 * 26 25 24 28 28 C 1.47019 * 108.69959 * 335.55068 * 9 8 7 29 29 H 1.09006 * 109.88003 * 120.86139 * 28 9 8 30 30 C 1.53002 * 109.88312 * 241.86901 * 28 9 8 31 31 H 1.09000 * 109.47208 * 300.00053 * 1 2 3 32 32 H 1.09000 * 109.47214 * 60.00732 * 1 2 3 33 33 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 34 34 H 1.08999 * 110.99965 * 324.20950 * 7 5 3 35 35 H 1.08992 * 110.99826 * 88.02285 * 7 5 3 36 36 H 1.09006 * 110.49961 * 278.45539 * 8 7 5 37 37 H 1.09001 * 110.34084 * 156.05944 * 8 7 5 38 38 H 0.96999 * 119.99635 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.00307 * 359.97438 * 23 22 12 40 40 H 1.07995 * 120.00498 * 179.70548 * 24 23 22 41 41 H 1.08006 * 119.99920 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.99782 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.00169 * 180.02562 * 27 26 25 44 44 H 1.08994 * 109.47083 * 58.54965 * 30 28 9 45 45 H 1.08996 * 109.46939 * 178.54993 * 30 28 9 46 46 H 1.09003 * 109.46905 * 298.54978 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9820 0.7372 -0.8515 7 6 4.1443 0.7256 1.3316 8 6 5.4939 1.4854 1.4192 9 7 5.2011 2.8311 0.8929 10 6 5.8911 3.9532 1.1779 11 8 5.5626 5.0097 0.6810 12 6 7.0705 3.8953 2.1142 13 1 6.7434 3.5325 3.0886 14 6 8.1113 2.9606 1.5537 15 1 8.4687 2.1320 2.1471 16 6 8.6072 3.1631 0.2833 17 7 8.2036 4.1965 -0.4232 18 14 9.8525 1.9701 -0.4346 19 1 9.1397 0.8843 -1.1546 20 1 10.7408 2.6915 -1.3809 21 1 10.6669 1.3858 0.6612 22 6 7.6611 5.2735 2.2641 23 6 6.8365 6.3562 2.5062 24 6 7.3781 7.6206 2.6432 25 6 8.7446 7.8022 2.5387 26 6 9.5691 6.7195 2.2967 27 6 9.0275 5.4551 2.1596 28 6 4.0359 2.7450 0.0005 29 1 3.2389 3.3913 0.3682 30 6 4.4335 3.1641 -1.4163 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.4961 0.9755 2.1716 35 1 4.3063 -0.3506 1.2724 36 1 6.2490 0.9941 0.8055 37 1 5.8272 1.5475 2.4551 38 1 8.5522 4.3387 -1.3171 39 1 5.7689 6.2144 2.5874 40 1 6.7334 8.4672 2.8276 41 1 9.1678 8.7902 2.6454 42 1 10.6367 6.8614 2.2155 43 1 9.6718 4.6092 1.9709 44 1 5.2357 2.5189 -1.7744 45 1 3.5716 3.0732 -2.0773 46 1 4.7763 4.1987 -1.4064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362924123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:17 Heat of formation + Delta-G solvation = -104.137373 kcal Electronic energy + Delta-G solvation = -29751.342145 eV Core-core repulsion = 25798.535976 eV Total energy + Delta-G solvation = -3952.806169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92791 -40.81319 -39.58328 -38.06739 -37.36857 -35.48856 -32.99795 -32.55503 -32.11753 -31.33890 -29.24318 -28.67140 -27.09880 -25.81214 -23.98760 -23.28987 -22.93986 -22.02688 -21.11668 -19.84395 -18.95678 -18.42129 -17.89243 -17.51017 -17.18506 -16.91012 -16.60626 -16.48255 -15.67947 -15.51314 -15.32078 -14.93215 -14.60150 -14.52769 -14.24174 -14.06096 -13.92132 -13.82674 -13.64063 -13.62683 -13.10280 -13.03138 -12.97810 -12.73796 -12.66694 -12.51757 -12.42741 -12.18943 -11.94002 -11.83567 -11.76926 -11.73225 -11.46194 -11.35169 -11.13579 -10.56910 -10.09450 -9.37198 -9.23107 -9.08558 -7.99651 -6.18183 0.88217 0.93995 1.07640 1.44333 1.50514 1.56694 1.58233 2.33963 2.46924 2.63244 3.23612 3.28263 3.38122 3.52605 3.78101 4.10325 4.29259 4.31012 4.33808 4.34911 4.35400 4.36202 4.39682 4.50565 4.58532 4.61683 4.71927 4.75198 4.76560 4.92614 4.98844 5.03910 5.05900 5.11666 5.17831 5.27829 5.31083 5.32308 5.47069 5.55567 5.75808 5.83896 5.90807 5.97979 6.00932 6.45157 6.54720 6.65488 6.80975 7.07824 7.48909 7.91778 8.99193 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.004212 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.689677 B = 6645.654656 C = 7795.082610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.481 3.519 4 O -0.536 6.536 5 C -0.087 4.087 6 H 0.141 0.859 7 C -0.106 4.106 8 C 0.115 3.885 9 N -0.620 5.620 10 C 0.565 3.435 11 O -0.582 6.582 12 C 0.054 3.946 13 H 0.064 0.936 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.043 3.957 17 N -0.872 5.872 18 Si 0.935 3.065 19 H -0.274 1.274 20 H -0.301 1.301 21 H -0.260 1.260 22 C -0.036 4.036 23 C -0.120 4.120 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.083 4.083 28 C 0.149 3.851 29 H 0.058 0.942 30 C -0.142 4.142 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -10.475 3.141 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.325 3.675 4 O -0.426 6.426 5 C -0.106 4.106 6 H 0.159 0.841 7 C -0.144 4.144 8 C -0.008 4.008 9 N -0.355 5.355 10 C 0.357 3.643 11 O -0.462 6.462 12 C 0.033 3.967 13 H 0.082 0.918 14 C -0.560 4.560 15 H 0.093 0.907 16 C -0.161 4.161 17 N -0.506 5.506 18 Si 0.761 3.239 19 H -0.200 1.200 20 H -0.228 1.228 21 H -0.185 1.185 22 C -0.037 4.037 23 C -0.138 4.138 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.170 4.170 27 C -0.101 4.101 28 C 0.045 3.955 29 H 0.076 0.924 30 C -0.200 4.200 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.679 -9.458 2.727 13.123 hybrid contribution 0.414 0.051 -1.108 1.184 sum -8.266 -9.408 1.619 12.627 Atomic orbital electron populations 1.23594 0.74681 1.05914 1.02450 1.86497 1.24957 1.31756 1.83514 1.23441 0.91584 0.81404 0.71096 1.90678 1.67635 1.37617 1.46632 1.22077 0.87351 0.96911 1.04300 0.84088 1.22919 0.95248 1.02542 0.93646 1.22346 0.96487 0.81486 1.00464 1.48367 1.30516 1.09025 1.47568 1.20874 0.81144 0.80980 0.81329 1.90507 1.69181 1.31292 1.55185 1.17948 0.92089 0.92525 0.94128 0.91837 1.20789 1.22663 1.12484 1.00097 0.90681 1.25518 0.97450 0.95714 0.97453 1.70262 1.42488 1.27610 1.10280 0.85904 0.79766 0.79574 0.78614 1.20001 1.22764 1.18451 1.19955 0.93787 0.95329 0.94584 1.21022 0.98435 0.93731 1.00609 1.21171 0.95865 0.96640 1.02935 1.21167 0.93443 0.99022 1.02306 1.21320 1.00000 0.93167 1.02477 1.21129 0.95300 0.96889 0.96778 1.21157 0.88638 0.94710 0.90998 0.92440 1.21912 1.00737 1.01396 0.95993 0.92091 0.92152 0.84508 0.90092 0.85107 0.91261 0.89774 0.93793 0.88790 0.85577 0.84505 0.85506 0.86675 0.92864 0.91319 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.26 10.57 -51.38 -0.54 -7.80 16 3 C 0.48 12.74 7.26 71.23 0.52 13.26 16 4 O -0.54 -17.97 15.17 21.96 0.33 -17.64 16 5 C -0.09 -2.27 2.98 -10.35 -0.03 -2.30 16 6 H 0.14 3.12 7.85 -2.39 -0.02 3.10 16 7 C -0.11 -2.32 6.53 32.06 0.21 -2.11 16 8 C 0.11 3.52 5.60 86.93 0.49 4.00 16 9 N -0.62 -24.99 3.06 -787.61 -2.41 -27.40 16 10 C 0.56 27.47 5.32 87.65 0.47 27.94 16 11 O -0.58 -32.69 12.99 -3.04 -0.04 -32.73 16 12 C 0.05 2.56 2.13 -13.04 -0.03 2.53 16 13 H 0.06 2.77 7.85 -2.39 -0.02 2.75 16 14 C -0.52 -24.38 5.80 25.60 0.15 -24.23 16 15 H 0.08 3.31 7.81 -2.91 -0.02 3.29 16 16 C 0.04 2.10 3.99 84.65 0.34 2.44 16 17 N -0.87 -47.57 10.88 21.45 0.23 -47.34 16 18 Si 0.93 39.27 29.54 68.60 2.03 41.29 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 C -0.04 -1.73 4.52 -19.87 -0.09 -1.82 16 23 C -0.12 -5.62 8.21 22.27 0.18 -5.44 16 24 C -0.15 -6.06 10.05 22.27 0.22 -5.84 16 25 C -0.14 -5.39 10.05 22.27 0.22 -5.16 16 26 C -0.15 -6.19 10.05 22.27 0.22 -5.96 16 27 C -0.08 -3.88 8.19 22.27 0.18 -3.69 16 28 C 0.15 5.48 2.88 45.34 0.13 5.61 16 29 H 0.06 2.41 6.81 -2.38 -0.02 2.39 16 30 C -0.14 -5.54 9.10 71.98 0.66 -4.88 16 31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 33 H 0.14 1.01 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.20 8.03 -2.38 -0.02 2.18 16 37 H 0.08 2.49 7.43 -2.39 -0.02 2.47 16 38 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.09 4.54 7.01 -2.91 -0.02 4.52 16 40 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 41 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 43 H 0.12 5.55 6.02 -2.91 -0.02 5.54 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.04 1.71 6.88 -2.39 -0.02 1.70 16 Total: -1.00 -69.41 371.79 5.61 -63.80 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.98 Total: 31.89 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.04 Total: -4.07 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -2.18 Total: -74.74 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.25 Total: -58.17 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Total: -69.41 5.61 -63.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362924123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.337 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds