Wall clock time and date at job start Tue Mar 31 2020 16:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47306 * 2 1 4 4 N 1.46507 * 109.47171 * 120.00623 * 2 1 3 5 5 C 1.46497 * 119.99343 * 299.99596 * 4 2 1 6 6 C 1.50708 * 109.47141 * 85.00193 * 5 4 2 7 7 H 1.07991 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00008 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00089 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 S 1.65592 * 120.00275 * 119.99829 * 4 2 1 15 15 O 1.42098 * 104.27797 * 26.06852 * 14 4 2 16 16 O 1.42104 * 104.27857 * 153.92821 * 14 4 2 17 17 C 1.81408 * 104.45024 * 269.99797 * 14 4 2 18 18 C 1.53000 * 109.47263 * 180.02562 * 17 14 4 19 19 H 1.09006 * 110.27435 * 305.70225 * 18 17 14 20 20 C 1.54940 * 110.30938 * 183.61364 * 18 17 14 21 21 C 1.55305 * 100.94295 * 204.64236 * 20 18 17 22 22 C 1.54384 * 102.25341 * 34.12613 * 21 20 18 23 23 H 1.09004 * 109.82588 * 98.16068 * 22 21 20 24 24 C 1.53000 * 109.83243 * 219.04105 * 22 21 20 25 25 C 1.52996 * 117.49850 * 248.62207 * 24 22 21 26 26 C 1.52998 * 60.00131 * 252.51277 * 25 24 22 27 27 O 1.43374 * 107.61054 * 338.56784 * 22 21 20 28 28 H 1.09001 * 109.47234 * 299.99658 * 1 2 3 29 29 H 1.09002 * 109.47139 * 59.99999 * 1 2 3 30 30 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46839 * 239.99991 * 2 1 3 32 32 H 1.09003 * 109.47168 * 179.97438 * 3 2 1 33 33 H 1.08990 * 109.47674 * 300.00223 * 3 2 1 34 34 H 1.09003 * 109.47179 * 60.00199 * 3 2 1 35 35 H 1.08994 * 109.47995 * 325.00168 * 5 4 2 36 36 H 1.09000 * 109.47072 * 205.00125 * 5 4 2 37 37 H 0.96997 * 119.99848 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.46831 * 300.00126 * 17 14 4 39 39 H 1.09005 * 109.46871 * 59.99809 * 17 14 4 40 40 H 1.09001 * 111.12424 * 322.55794 * 20 18 17 41 41 H 1.08996 * 111.12952 * 86.72136 * 20 18 17 42 42 H 1.08994 * 110.85395 * 152.31885 * 21 20 18 43 43 H 1.09005 * 110.84802 * 275.94211 * 21 20 18 44 44 H 1.08994 * 115.54720 * 34.33512 * 24 22 21 45 45 H 1.08997 * 117.50363 * 0.02562 * 25 24 22 46 46 H 1.09003 * 117.49687 * 145.02521 * 25 24 22 47 47 H 1.09003 * 117.50191 * 252.51171 * 26 25 24 48 48 H 1.09004 * 117.51582 * 107.48047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 0.3224 -0.7440 2.9311 7 1 -0.2130 -1.4031 2.2640 8 6 -0.2213 -0.4098 4.1533 9 7 -1.3922 -0.8934 4.5065 10 14 0.7053 0.7297 5.3076 11 1 1.5829 -0.0730 6.1968 12 1 -0.2646 1.4964 6.1304 13 1 1.5341 1.6718 4.5134 14 16 2.9704 -2.0371 1.0441 15 8 3.6004 -1.8799 -0.2198 16 8 3.7316 -2.0654 2.2438 17 6 1.7963 -3.4194 1.0026 18 6 2.5631 -4.7360 0.8633 19 1 3.2241 -4.6983 -0.0027 20 6 1.5753 -5.9227 0.7346 21 6 2.4539 -7.0949 1.2504 22 6 3.3135 -6.4081 2.3334 23 1 2.8826 -6.5903 3.3179 24 6 4.7427 -6.9520 2.2838 25 6 5.2131 -7.8104 3.4597 26 6 5.7487 -6.3874 3.2889 27 8 3.3185 -5.0015 2.0559 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8898 34 1 1.6767 1.9563 0.8900 35 1 1.6165 0.8984 2.5046 36 1 2.4197 -0.5061 3.2464 37 1 -1.7748 -0.6581 5.3662 38 1 1.2176 -3.4323 1.9261 39 1 1.1232 -3.2989 0.1537 40 1 0.7018 -5.7774 1.3701 41 1 1.2820 -6.0789 -0.3035 42 1 1.8363 -7.8803 1.6857 43 1 3.0806 -7.4908 0.4512 44 1 5.1133 -7.2102 1.2919 45 1 4.5043 -7.9880 4.2685 46 1 5.8933 -8.6337 3.2415 47 1 6.7812 -6.2745 2.9583 48 1 5.3923 -5.6282 3.9852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364767771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:22 Heat of formation + Delta-G solvation = -96.046028 kcal Electronic energy + Delta-G solvation = -28483.941702 eV Core-core repulsion = 24666.930351 eV Total energy + Delta-G solvation = -3817.011351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.84337 -36.99399 -36.77162 -36.47646 -35.25901 -32.73024 -32.33856 -31.55091 -30.83213 -27.44774 -26.78301 -26.45534 -22.66074 -22.45634 -22.30297 -21.58781 -20.40691 -20.05104 -18.02982 -17.26361 -16.97935 -16.86944 -16.38763 -15.86157 -15.43774 -14.99991 -14.71093 -14.34977 -13.85441 -13.60300 -13.54477 -13.24700 -12.96801 -12.69118 -12.56859 -12.37144 -12.03842 -11.96414 -11.88490 -11.72335 -11.58749 -11.55394 -11.46635 -11.36825 -11.23618 -11.13041 -10.97196 -10.89083 -10.80854 -10.42324 -10.39369 -10.27396 -10.11732 -10.05070 -9.86811 -9.55182 -9.44721 -8.62100 -8.02048 -6.14973 -4.14139 0.91851 3.27017 3.33035 3.38066 3.39859 3.40347 4.01857 4.28309 4.37571 4.39759 4.43197 4.73125 4.77147 4.86858 4.95678 4.99262 5.12349 5.18108 5.21582 5.26939 5.32620 5.33467 5.52374 5.56844 5.63192 5.66796 5.69735 5.73311 5.80412 5.91431 5.96907 6.01249 6.09812 6.15428 6.21653 6.22019 6.26868 6.44415 6.53033 6.69210 6.97638 7.00659 7.07377 7.25826 7.47456 7.59452 8.42057 8.86814 9.46778 10.97047 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004524 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.030904 B = 6187.399883 C = 7058.333375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.156 4.156 4 N -0.978 5.978 5 C 0.211 3.789 6 C -0.540 4.540 7 H 0.083 0.917 8 C 0.077 3.923 9 N -0.895 5.895 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.263 1.263 14 S 2.614 3.386 15 O -0.980 6.980 16 O -0.943 6.943 17 C -0.634 4.634 18 C 0.090 3.910 19 H 0.079 0.921 20 C -0.143 4.143 21 C -0.147 4.147 22 C 0.108 3.892 23 H 0.085 0.915 24 C -0.171 4.171 25 C -0.176 4.176 26 C -0.166 4.166 27 O -0.358 6.358 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 -10.052 -8.352 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 C -0.215 4.215 4 N -0.815 5.815 5 C 0.087 3.913 6 C -0.579 4.579 7 H 0.101 0.899 8 C -0.126 4.126 9 N -0.533 5.533 10 Si 0.694 3.306 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.187 1.187 14 S 2.707 3.293 15 O -0.970 6.970 16 O -0.933 6.933 17 C -0.761 4.761 18 C 0.031 3.969 19 H 0.097 0.903 20 C -0.182 4.182 21 C -0.185 4.185 22 C 0.050 3.950 23 H 0.102 0.898 24 C -0.189 4.189 25 C -0.213 4.213 26 C -0.203 4.203 27 O -0.278 6.278 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.627 -9.890 -8.110 14.891 hybrid contribution -0.619 0.151 0.635 0.899 sum 7.008 -9.738 -7.475 14.136 Atomic orbital electron populations 1.22227 0.94658 1.02327 1.02471 1.20691 0.94953 0.93595 0.86676 1.22084 1.01022 0.96368 1.02061 1.57334 1.69427 1.41918 1.12835 1.19592 0.96916 0.96319 0.78450 1.21518 1.02613 1.30736 1.02995 0.89944 1.24832 0.94663 0.95616 0.97535 1.69885 1.16939 1.44447 1.22045 0.86981 0.80125 0.81779 0.81761 1.19732 1.21177 1.18749 1.04707 0.75583 0.75183 0.73824 1.93508 1.73595 1.85508 1.44405 1.93559 1.67201 1.85690 1.46894 1.30864 1.17535 1.14688 1.13050 1.22517 0.92104 0.93404 0.88886 0.90323 1.23284 0.98780 0.93156 1.02952 1.23169 0.98266 0.98462 0.98608 1.22313 0.92758 0.80898 0.98991 0.89756 1.22685 0.95798 1.04885 0.95529 1.22954 1.03857 0.94623 0.99865 1.22881 0.98544 0.96348 1.02491 1.88667 1.72802 1.23160 1.43134 0.89529 0.93526 0.92900 0.89884 0.92807 0.92268 0.91653 0.94274 0.93636 0.92562 0.82823 0.84605 0.89347 0.89588 0.89724 0.90271 0.87733 0.88689 0.88807 0.88828 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 8.21 37.16 0.30 -2.35 16 2 C 0.15 2.55 3.19 -67.93 -0.22 2.33 16 3 C -0.16 -2.46 9.16 37.15 0.34 -2.12 16 4 N -0.98 -19.66 2.66 -108.57 -0.29 -19.95 16 5 C 0.21 4.87 4.05 -5.19 -0.02 4.85 16 6 C -0.54 -13.83 8.08 -34.44 -0.28 -14.11 16 7 H 0.08 2.18 7.32 -52.49 -0.38 1.80 16 8 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -25.75 13.96 55.43 0.77 -24.98 16 10 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 14 S 2.61 51.64 5.31 -107.50 -0.57 51.07 16 15 O -0.98 -19.82 16.57 -57.54 -0.95 -20.77 16 16 O -0.94 -21.92 16.23 -58.09 -0.94 -22.87 16 17 C -0.63 -10.40 5.90 37.16 0.22 -10.18 16 18 C 0.09 1.33 3.41 -25.71 -0.09 1.25 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.14 -1.65 6.57 -24.49 -0.16 -1.81 16 21 C -0.15 -1.50 6.54 -24.78 -0.16 -1.66 16 22 C 0.11 1.40 3.71 -26.01 -0.10 1.30 16 23 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 24 C -0.17 -1.97 5.38 -90.62 -0.49 -2.45 16 25 C -0.18 -1.72 10.18 -26.73 -0.27 -1.99 16 26 C -0.17 -1.99 10.19 -26.73 -0.27 -2.26 16 27 O -0.36 -6.03 10.24 -35.23 -0.36 -6.39 16 28 H 0.09 1.69 6.65 -51.93 -0.35 1.35 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.08 1.33 6.87 -51.93 -0.36 0.97 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.08 6.69 -51.93 -0.35 0.73 16 35 H 0.04 0.89 5.51 -51.93 -0.29 0.60 16 36 H 0.05 1.12 6.24 -51.93 -0.32 0.79 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.15 2.78 8.14 -51.93 -0.42 2.36 16 39 H 0.14 1.84 8.14 -51.92 -0.42 1.42 16 40 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.70 7.65 -51.93 -0.40 0.30 16 44 H 0.10 1.09 7.84 -51.93 -0.41 0.68 16 45 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -32.25 387.87 -10.78 -43.03 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.33 Total: 6.11 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -1.29 Total: -27.23 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.48 Total: -44.93 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.26 Total: -50.03 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 51.64 SS G_CDS: -0.57 Total: 51.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.25 -10.78 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364767771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.015 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds