Wall clock time and date at job start Tue Mar 31 2020 16:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47306 * 2 1 4 4 N 1.46507 * 109.47171 * 120.00623 * 2 1 3 5 5 C 1.46497 * 119.99343 * 299.99596 * 4 2 1 6 6 C 1.50708 * 109.47141 * 85.00193 * 5 4 2 7 7 H 1.07991 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00008 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00089 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 S 1.65592 * 120.00275 * 119.99829 * 4 2 1 15 15 O 1.42098 * 104.27797 * 26.06852 * 14 4 2 16 16 O 1.42104 * 104.27857 * 153.92821 * 14 4 2 17 17 C 1.81408 * 104.45024 * 269.99797 * 14 4 2 18 18 C 1.53000 * 109.47263 * 180.02562 * 17 14 4 19 19 H 1.09006 * 110.27435 * 305.70225 * 18 17 14 20 20 C 1.54940 * 110.30938 * 183.61364 * 18 17 14 21 21 C 1.55305 * 100.94295 * 204.64236 * 20 18 17 22 22 C 1.54384 * 102.25341 * 34.12613 * 21 20 18 23 23 H 1.09004 * 109.82588 * 98.16068 * 22 21 20 24 24 C 1.53000 * 109.83243 * 219.04105 * 22 21 20 25 25 C 1.52996 * 117.49850 * 248.62207 * 24 22 21 26 26 C 1.52998 * 60.00131 * 252.51277 * 25 24 22 27 27 O 1.43374 * 107.61054 * 338.56784 * 22 21 20 28 28 H 1.09001 * 109.47234 * 299.99658 * 1 2 3 29 29 H 1.09002 * 109.47139 * 59.99999 * 1 2 3 30 30 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46839 * 239.99991 * 2 1 3 32 32 H 1.09003 * 109.47168 * 179.97438 * 3 2 1 33 33 H 1.08990 * 109.47674 * 300.00223 * 3 2 1 34 34 H 1.09003 * 109.47179 * 60.00199 * 3 2 1 35 35 H 1.08994 * 109.47995 * 325.00168 * 5 4 2 36 36 H 1.09000 * 109.47072 * 205.00125 * 5 4 2 37 37 H 0.96997 * 119.99848 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.46831 * 300.00126 * 17 14 4 39 39 H 1.09005 * 109.46871 * 59.99809 * 17 14 4 40 40 H 1.09001 * 111.12424 * 322.55794 * 20 18 17 41 41 H 1.08996 * 111.12952 * 86.72136 * 20 18 17 42 42 H 1.08994 * 110.85395 * 152.31885 * 21 20 18 43 43 H 1.09005 * 110.84802 * 275.94211 * 21 20 18 44 44 H 1.08994 * 115.54720 * 34.33512 * 24 22 21 45 45 H 1.08997 * 117.50363 * 0.02562 * 25 24 22 46 46 H 1.09003 * 117.49687 * 145.02521 * 25 24 22 47 47 H 1.09003 * 117.50191 * 252.51171 * 26 25 24 48 48 H 1.09004 * 117.51582 * 107.48047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 0.3224 -0.7440 2.9311 7 1 -0.2130 -1.4031 2.2640 8 6 -0.2213 -0.4098 4.1533 9 7 -1.3922 -0.8934 4.5065 10 14 0.7053 0.7297 5.3076 11 1 1.5829 -0.0730 6.1968 12 1 -0.2646 1.4964 6.1304 13 1 1.5341 1.6718 4.5134 14 16 2.9704 -2.0371 1.0441 15 8 3.6004 -1.8799 -0.2198 16 8 3.7316 -2.0654 2.2438 17 6 1.7963 -3.4194 1.0026 18 6 2.5631 -4.7360 0.8633 19 1 3.2241 -4.6983 -0.0027 20 6 1.5753 -5.9227 0.7346 21 6 2.4539 -7.0949 1.2504 22 6 3.3135 -6.4081 2.3334 23 1 2.8826 -6.5903 3.3179 24 6 4.7427 -6.9520 2.2838 25 6 5.2131 -7.8104 3.4597 26 6 5.7487 -6.3874 3.2889 27 8 3.3185 -5.0015 2.0559 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8898 34 1 1.6767 1.9563 0.8900 35 1 1.6165 0.8984 2.5046 36 1 2.4197 -0.5061 3.2464 37 1 -1.7748 -0.6581 5.3662 38 1 1.2176 -3.4323 1.9261 39 1 1.1232 -3.2989 0.1537 40 1 0.7018 -5.7774 1.3701 41 1 1.2820 -6.0789 -0.3035 42 1 1.8363 -7.8803 1.6857 43 1 3.0806 -7.4908 0.4512 44 1 5.1133 -7.2102 1.2919 45 1 4.5043 -7.9880 4.2685 46 1 5.8933 -8.6337 3.2415 47 1 6.7812 -6.2745 2.9583 48 1 5.3923 -5.6282 3.9852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364767771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:22 Heat of formation + Delta-G solvation = -117.213528 kcal Electronic energy + Delta-G solvation = -28484.859593 eV Core-core repulsion = 24666.930351 eV Total energy + Delta-G solvation = -3817.929242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87003 -38.53316 -38.13006 -37.69420 -36.91934 -34.72322 -33.43958 -32.61560 -32.46148 -29.30441 -28.01670 -27.62259 -24.31430 -23.55879 -23.29926 -22.56527 -21.74360 -21.14019 -19.63272 -18.97749 -18.74806 -18.08878 -17.39520 -17.35630 -17.00714 -16.26670 -16.02993 -15.60795 -15.50125 -14.96395 -14.70433 -14.58387 -14.41616 -14.18971 -13.80400 -13.75774 -13.64314 -13.35181 -13.14344 -13.04172 -13.00540 -12.99727 -12.70030 -12.67570 -12.54389 -12.41367 -12.40050 -12.32906 -12.14677 -11.88480 -11.81830 -11.66249 -11.40952 -11.31729 -11.20421 -10.97757 -10.72382 -10.63987 -9.67405 -8.25710 -6.26204 -0.62456 1.34816 1.39854 1.45941 1.78534 2.36293 2.40945 2.86158 3.06946 3.09451 3.27234 3.38188 3.53233 3.67503 3.86710 3.89725 3.95293 4.06673 4.12094 4.20705 4.31133 4.33834 4.36379 4.43669 4.50243 4.54596 4.68882 4.77602 4.86234 4.90430 4.91771 4.92823 4.99563 5.00790 5.02444 5.07978 5.14470 5.21110 5.24057 5.28554 5.29085 5.50517 5.54676 5.74622 5.93135 5.97448 6.35579 6.77152 7.36696 8.88628 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004524 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.030904 B = 6187.399883 C = 7058.333375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 C -0.157 4.157 4 N -0.984 5.984 5 C 0.220 3.780 6 C -0.524 4.524 7 H 0.067 0.933 8 C 0.026 3.974 9 N -0.935 5.935 10 Si 0.912 3.088 11 H -0.278 1.278 12 H -0.280 1.280 13 H -0.246 1.246 14 S 2.610 3.390 15 O -0.986 6.986 16 O -0.988 6.988 17 C -0.614 4.614 18 C 0.076 3.924 19 H 0.092 0.908 20 C -0.138 4.138 21 C -0.136 4.136 22 C 0.093 3.907 23 H 0.075 0.925 24 C -0.175 4.175 25 C -0.151 4.151 26 C -0.192 4.192 27 O -0.397 6.397 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.134 0.866 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.102 0.898 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -11.187 -10.434 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 C -0.215 4.215 4 N -0.821 5.821 5 C 0.095 3.905 6 C -0.563 4.563 7 H 0.086 0.914 8 C -0.173 4.173 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.204 1.204 12 H -0.206 1.206 13 H -0.170 1.170 14 S 2.707 3.293 15 O -0.977 6.977 16 O -0.978 6.978 17 C -0.746 4.746 18 C 0.017 3.983 19 H 0.110 0.890 20 C -0.177 4.177 21 C -0.174 4.174 22 C 0.036 3.964 23 H 0.093 0.907 24 C -0.193 4.193 25 C -0.188 4.188 26 C -0.229 4.229 27 O -0.317 6.317 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.152 0.848 39 H 0.185 0.815 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.120 0.880 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.878 -10.979 -10.212 16.938 hybrid contribution -0.688 0.445 1.209 1.461 sum 7.190 -10.535 -9.003 15.612 Atomic orbital electron populations 1.22144 0.94250 1.02124 1.02541 1.21029 0.95318 0.94537 0.86001 1.22104 1.00864 0.95493 1.03082 1.57280 1.69412 1.42879 1.12527 1.19290 0.94879 0.96523 0.79834 1.21702 1.03050 1.29312 1.02244 0.91440 1.25489 0.95371 0.97256 0.99196 1.69985 1.18510 1.46414 1.22686 0.86240 0.79259 0.80578 0.80241 1.20423 1.20553 1.16989 1.04628 0.75921 0.75812 0.72892 1.93486 1.74312 1.85938 1.43961 1.93503 1.69209 1.86497 1.48603 1.30669 1.16560 1.13909 1.13425 1.22807 0.93100 0.93508 0.88844 0.88998 1.23312 0.97725 0.91922 1.04723 1.23182 0.97925 0.98101 0.98161 1.22574 0.94354 0.79718 0.99745 0.90717 1.22761 0.94734 1.05237 0.96595 1.23038 1.03268 0.93708 0.98783 1.22873 0.99256 0.97592 1.03191 1.88645 1.73295 1.25694 1.44069 0.92679 0.90125 0.93272 0.88068 0.93104 0.88979 0.92921 0.93599 0.95315 0.92602 0.84791 0.81472 0.90247 0.86587 0.87737 0.88190 0.86225 0.88428 0.86347 0.87990 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 8.21 71.98 0.59 -4.28 16 2 C 0.14 4.51 3.19 44.99 0.14 4.65 16 3 C -0.16 -4.65 9.16 71.98 0.66 -3.99 16 4 N -0.98 -39.44 2.66 -497.41 -1.32 -40.76 16 5 C 0.22 10.25 4.05 85.64 0.35 10.60 16 6 C -0.52 -27.33 8.08 25.60 0.21 -27.12 16 7 H 0.07 3.66 7.32 -2.92 -0.02 3.64 16 8 C 0.03 1.43 5.47 84.65 0.46 1.89 16 9 N -0.94 -55.00 13.96 21.45 0.30 -54.70 16 10 Si 0.91 43.23 27.47 68.60 1.88 45.11 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 14 S 2.61 103.53 5.31 -56.49 -0.30 103.23 16 15 O -0.99 -39.10 16.57 -127.65 -2.12 -41.22 16 16 O -0.99 -47.56 16.23 -127.12 -2.06 -49.63 16 17 C -0.61 -19.86 5.90 71.98 0.42 -19.43 16 18 C 0.08 2.18 3.41 31.26 0.11 2.28 16 19 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 20 C -0.14 -2.83 6.57 32.05 0.21 -2.62 16 21 C -0.14 -2.39 6.54 31.86 0.21 -2.18 16 22 C 0.09 2.34 3.71 31.06 0.12 2.45 16 23 H 0.07 1.94 7.93 -2.39 -0.02 1.92 16 24 C -0.18 -3.82 5.38 -10.79 -0.06 -3.88 16 25 C -0.15 -2.71 10.18 30.59 0.31 -2.40 16 26 C -0.19 -4.66 10.19 30.59 0.31 -4.35 16 27 O -0.40 -13.50 10.24 -148.98 -1.53 -15.03 16 28 H 0.05 2.12 6.65 -2.39 -0.02 2.11 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.58 7.93 -2.38 -0.02 1.56 16 31 H 0.10 2.99 6.87 -2.39 -0.02 2.97 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.68 6.69 -2.39 -0.02 1.67 16 35 H 0.05 2.08 5.51 -2.39 -0.01 2.07 16 36 H 0.03 1.45 6.24 -2.39 -0.01 1.44 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.13 4.97 8.14 -2.39 -0.02 4.95 16 39 H 0.17 4.21 8.14 -2.39 -0.02 4.20 16 40 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 1.36 7.65 -2.38 -0.02 1.34 16 44 H 0.12 2.21 7.84 -2.39 -0.02 2.20 16 45 H 0.10 1.70 8.06 -2.39 -0.02 1.68 16 46 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -71.91 387.87 -0.23 -72.14 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.87 Total: 29.23 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 4.04 Total: -48.38 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -1.02 Total: -95.46 kcal Atomic # 8 Polarization: -100.17 SS G_CDS: -5.70 Total: -105.87 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 103.53 SS G_CDS: -0.30 Total: 103.23 kcal Total: -71.91 -0.23 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364767771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.072 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds