Wall clock time and date at job start Tue Mar 31 2020 17:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49173 * 2 1 4 4 C 1.53097 * 109.47989 * 239.97651 * 2 1 3 5 5 C 1.53174 * 109.16185 * 182.40944 * 4 2 1 6 6 H 1.09000 * 109.61475 * 297.06355 * 5 4 2 7 7 C 1.53002 * 109.54138 * 176.84320 * 5 4 2 8 8 S 1.81404 * 109.47194 * 175.43838 * 7 5 4 9 9 O 1.42096 * 110.54627 * 291.63146 * 8 7 5 10 10 O 1.42109 * 110.53907 * 68.37790 * 8 7 5 11 11 N 1.65603 * 104.44883 * 179.97438 * 8 7 5 12 12 C 1.46923 * 120.62749 * 90.00423 * 11 8 7 13 13 C 1.53193 * 108.77621 * 233.58367 * 12 11 8 14 14 C 1.53041 * 109.31042 * 305.36741 * 13 12 11 15 15 C 1.53039 * 109.54044 * 61.36397 * 14 13 12 16 16 H 1.09001 * 109.49748 * 58.61689 * 15 14 13 17 17 C 1.50703 * 109.49745 * 178.68307 * 15 14 13 18 18 H 1.07998 * 119.99672 * 119.99952 * 17 15 14 19 19 C 1.37873 * 119.99526 * 300.00068 * 17 15 14 20 20 N 1.31518 * 119.99494 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00444 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.46823 * 90.00385 * 21 19 17 23 23 H 1.48500 * 109.46872 * 210.00144 * 21 19 17 24 24 H 1.48495 * 109.47183 * 329.99918 * 21 19 17 25 25 C 1.46924 * 120.62995 * 269.72008 * 11 8 7 26 26 C 1.53176 * 109.04061 * 56.97999 * 5 4 2 27 27 C 1.53091 * 109.21206 * 302.98570 * 26 5 4 28 28 O 1.42902 * 109.48518 * 120.03159 * 2 1 3 29 29 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 300.02362 * 1 2 3 31 31 H 1.08997 * 109.47411 * 60.02901 * 1 2 3 32 32 H 1.08995 * 109.52587 * 62.49797 * 4 2 1 33 33 H 1.09004 * 109.57034 * 302.34297 * 4 2 1 34 34 H 1.08997 * 109.47731 * 295.44095 * 7 5 4 35 35 H 1.09006 * 109.46972 * 55.44376 * 7 5 4 36 36 H 1.09006 * 109.58773 * 353.37613 * 12 11 8 37 37 H 1.09001 * 109.58744 * 113.79470 * 12 11 8 38 38 H 1.08998 * 109.49166 * 65.31868 * 13 12 11 39 39 H 1.09003 * 109.49746 * 185.38186 * 13 12 11 40 40 H 1.09004 * 109.45769 * 181.38604 * 14 13 12 41 41 H 1.09008 * 109.45667 * 301.35478 * 14 13 12 42 42 H 0.97001 * 120.00274 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58669 * 246.19982 * 25 11 8 44 44 H 1.08998 * 109.59004 * 6.63223 * 25 11 8 45 45 H 1.09002 * 109.52410 * 62.92413 * 26 5 4 46 46 H 1.09004 * 109.52533 * 183.05059 * 26 5 4 47 47 H 1.09007 * 109.48127 * 177.62276 * 27 26 5 48 48 H 1.09000 * 109.48171 * 297.66002 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5710 -0.7708 -1.2122 6 1 3.9702 0.2431 -1.2416 7 6 4.0876 -1.5594 -2.4173 8 16 5.9005 -1.5018 -2.4456 9 8 6.3533 -0.1866 -2.7361 10 8 6.4398 -2.2384 -1.3565 11 7 6.3212 -2.3840 -3.7825 12 6 6.4671 -1.7345 -5.0923 13 6 5.5915 -2.4733 -6.1093 14 6 5.9519 -3.9606 -6.1015 15 6 5.6794 -4.5461 -4.7140 16 1 4.6288 -4.4056 -4.4598 17 6 6.0040 -6.0177 -4.7164 18 1 6.7576 -6.4055 -4.0471 19 6 5.3389 -6.8689 -5.5732 20 7 5.6219 -8.1532 -5.5750 21 14 4.0350 -6.1981 -6.7305 22 1 4.6686 -5.8024 -8.0139 23 1 3.0132 -7.2452 -6.9850 24 1 3.3866 -5.0137 -6.1125 25 6 6.5616 -3.8298 -3.6801 26 6 4.0176 -1.4601 0.0807 27 6 3.4320 -0.7098 1.2798 28 8 2.0066 -0.6742 1.1663 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 1.7148 -0.1843 -2.1399 33 1 1.6443 -1.7374 -1.2722 34 1 3.7582 -2.5956 -2.3419 35 1 3.6959 -1.1194 -3.3345 36 1 6.1478 -0.6946 -5.0222 37 1 7.5096 -1.7782 -5.4077 38 1 4.5419 -2.3518 -5.8416 39 1 5.7632 -2.0620 -7.1040 40 1 5.3473 -4.4846 -6.8419 41 1 7.0078 -4.0796 -6.3448 42 1 5.1537 -8.7522 -6.1774 43 1 7.6116 -4.0409 -3.8828 44 1 6.3045 -4.1729 -2.6780 45 1 3.6613 -2.4902 0.0862 46 1 5.1060 -1.4508 0.1413 47 1 3.7123 -1.2212 2.2008 48 1 3.8206 0.3085 1.2965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364885411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:40 Heat of formation + Delta-G solvation = -132.797641 kcal Electronic energy + Delta-G solvation = -28377.133213 eV Core-core repulsion = 24558.528193 eV Total energy + Delta-G solvation = -3818.605020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.82468 -38.09187 -37.04567 -35.87279 -35.22499 -33.35411 -33.03329 -31.62564 -30.60208 -29.26109 -27.28983 -25.21793 -24.26340 -23.62802 -22.05741 -21.62212 -20.51158 -19.63275 -18.55624 -17.62555 -16.74123 -16.64028 -16.37925 -16.12628 -15.87167 -15.11734 -14.93946 -14.71227 -14.24533 -14.22312 -13.74580 -13.35506 -13.25280 -13.14787 -12.92452 -12.79079 -12.61838 -12.59633 -12.50093 -12.22065 -11.97860 -11.91525 -11.72414 -11.41071 -11.40763 -11.27653 -11.22096 -11.19516 -10.72693 -10.63165 -10.44486 -10.31297 -10.18624 -9.92688 -9.70536 -9.42806 -9.10258 -8.64374 -8.44226 -6.15617 -4.16253 0.36779 2.79201 3.18746 3.28312 3.31971 3.51818 3.86298 4.13788 4.24223 4.31881 4.36930 4.46265 4.66239 4.88548 4.91566 4.95368 4.97966 5.11319 5.16340 5.20320 5.26044 5.31486 5.37865 5.42052 5.49369 5.52551 5.55473 5.68682 5.72037 5.74191 5.88772 5.90311 5.91706 5.97711 6.06187 6.08074 6.31188 6.34039 6.45164 6.65783 6.73776 6.89426 7.00111 7.03383 7.37635 7.66994 8.40888 8.88161 9.45698 10.97307 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003889 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.861249 B = 7197.473580 C = 7951.510195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.058 0.942 4 C -0.138 4.138 5 C -0.076 4.076 6 H 0.082 0.918 7 C -0.630 4.630 8 S 2.605 3.395 9 O -0.966 6.966 10 O -0.951 6.951 11 N -0.998 5.998 12 C 0.126 3.874 13 C -0.140 4.140 14 C -0.120 4.120 15 C 0.003 3.997 16 H 0.029 0.971 17 C -0.517 4.517 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.136 3.864 26 C -0.183 4.183 27 C 0.065 3.935 28 O -0.380 6.380 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.265 0.735 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 17.940 6.925 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.076 0.924 4 C -0.176 4.176 5 C -0.096 4.096 6 H 0.101 0.899 7 C -0.759 4.759 8 S 2.699 3.301 9 O -0.956 6.956 10 O -0.941 6.941 11 N -0.836 5.836 12 C 0.001 3.999 13 C -0.179 4.179 14 C -0.158 4.158 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.556 4.556 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.192 1.192 25 C 0.012 3.988 26 C -0.220 4.220 27 C -0.012 4.012 28 O -0.299 6.299 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.462 18.097 7.577 20.656 hybrid contribution -1.156 -0.059 -1.499 1.894 sum -7.618 18.038 6.078 20.503 Atomic orbital electron populations 1.21765 0.92930 1.03144 1.02392 1.22123 0.95194 0.94986 0.85104 0.92359 1.22261 0.93925 1.02801 0.98643 1.20906 0.97671 0.98741 0.92275 0.89947 1.30809 1.28441 1.10324 1.06296 1.05095 0.77489 0.73777 0.73713 1.93554 1.79016 1.38697 1.84337 1.93580 1.75947 1.72228 1.52380 1.57707 1.83313 1.19941 1.22643 1.21357 1.00812 0.95329 0.82416 1.22037 0.99464 0.98228 0.98194 1.21941 1.01418 0.92312 1.00119 1.19578 0.95544 0.95739 0.90836 0.95299 1.20941 1.23011 0.89257 1.22383 0.90432 1.24989 0.96485 0.94675 0.96829 1.69892 1.42146 1.03116 1.38331 0.86845 0.81670 0.78141 0.81514 1.20563 1.22569 1.19183 1.21704 1.00952 0.75216 1.00888 1.22727 1.03028 1.01782 0.94499 1.22566 0.80724 0.99542 0.98331 1.87954 1.21110 1.77994 1.42857 0.91631 0.91810 0.91065 0.90474 0.90201 0.84341 0.85050 0.90235 0.91021 0.92358 0.91748 0.93325 0.91796 0.92552 0.91143 0.89779 0.89393 0.89003 0.88144 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.56 37.16 0.36 -0.77 16 2 C 0.08 0.78 3.27 -26.68 -0.09 0.70 16 3 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.14 -1.32 4.71 -26.59 -0.13 -1.45 16 5 C -0.08 -0.83 2.28 -90.44 -0.21 -1.03 16 6 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.63 -7.36 5.63 37.16 0.21 -7.15 16 8 S 2.61 38.62 5.07 -107.50 -0.54 38.08 16 9 O -0.97 -15.82 16.73 -57.54 -0.96 -16.79 16 10 O -0.95 -16.35 14.53 -57.54 -0.84 -17.18 16 11 N -1.00 -15.97 3.21 -113.27 -0.36 -16.33 16 12 C 0.13 1.82 6.31 -3.71 -0.02 1.79 16 13 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 14 C -0.12 -2.36 4.65 -26.69 -0.12 -2.48 16 15 C 0.00 0.07 1.86 -91.42 -0.17 -0.10 16 16 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 17 C -0.52 -13.66 9.15 -34.44 -0.31 -13.97 16 18 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 20 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 21 Si 0.89 20.94 24.39 -169.99 -4.15 16.79 16 22 H -0.28 -6.40 6.86 56.52 0.39 -6.02 16 23 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 25 C 0.14 2.56 5.57 -3.48 -0.02 2.54 16 26 C -0.18 -2.09 5.00 -26.59 -0.13 -2.22 16 27 C 0.06 0.65 6.86 37.20 0.26 0.91 16 28 O -0.38 -4.28 10.41 -35.23 -0.37 -4.65 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.14 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.08 0.99 7.10 -51.93 -0.37 0.62 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.03 3.25 -51.93 -0.17 0.86 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.57 7.09 -51.93 -0.37 1.20 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.12 5.83 -51.93 -0.30 0.82 16 47 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -32.20 370.34 -9.88 -42.07 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.37 Total: 1.82 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -0.64 Total: -23.63 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.41 Total: -42.09 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -2.17 Total: -38.62 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.15 Total: 16.79 kcal Atomic # 16 Polarization: 38.62 SS G_CDS: -0.54 Total: 38.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.20 -9.88 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.724 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds