Wall clock time and date at job start Tue Mar 31 2020 17:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49173 * 2 1 4 4 C 1.53097 * 109.47989 * 239.97651 * 2 1 3 5 5 C 1.53174 * 109.16185 * 182.40944 * 4 2 1 6 6 H 1.09000 * 109.61475 * 297.06355 * 5 4 2 7 7 C 1.53002 * 109.54138 * 176.84320 * 5 4 2 8 8 S 1.81404 * 109.47194 * 175.43838 * 7 5 4 9 9 O 1.42096 * 110.54627 * 291.63146 * 8 7 5 10 10 O 1.42109 * 110.53907 * 68.37790 * 8 7 5 11 11 N 1.65603 * 104.44883 * 179.97438 * 8 7 5 12 12 C 1.46923 * 120.62749 * 90.00423 * 11 8 7 13 13 C 1.53193 * 108.77621 * 233.58367 * 12 11 8 14 14 C 1.53041 * 109.31042 * 305.36741 * 13 12 11 15 15 C 1.53039 * 109.54044 * 61.36397 * 14 13 12 16 16 H 1.09001 * 109.49748 * 58.61689 * 15 14 13 17 17 C 1.50703 * 109.49745 * 178.68307 * 15 14 13 18 18 H 1.07998 * 119.99672 * 119.99952 * 17 15 14 19 19 C 1.37873 * 119.99526 * 300.00068 * 17 15 14 20 20 N 1.31518 * 119.99494 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00444 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.46823 * 90.00385 * 21 19 17 23 23 H 1.48500 * 109.46872 * 210.00144 * 21 19 17 24 24 H 1.48495 * 109.47183 * 329.99918 * 21 19 17 25 25 C 1.46924 * 120.62995 * 269.72008 * 11 8 7 26 26 C 1.53176 * 109.04061 * 56.97999 * 5 4 2 27 27 C 1.53091 * 109.21206 * 302.98570 * 26 5 4 28 28 O 1.42902 * 109.48518 * 120.03159 * 2 1 3 29 29 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 300.02362 * 1 2 3 31 31 H 1.08997 * 109.47411 * 60.02901 * 1 2 3 32 32 H 1.08995 * 109.52587 * 62.49797 * 4 2 1 33 33 H 1.09004 * 109.57034 * 302.34297 * 4 2 1 34 34 H 1.08997 * 109.47731 * 295.44095 * 7 5 4 35 35 H 1.09006 * 109.46972 * 55.44376 * 7 5 4 36 36 H 1.09006 * 109.58773 * 353.37613 * 12 11 8 37 37 H 1.09001 * 109.58744 * 113.79470 * 12 11 8 38 38 H 1.08998 * 109.49166 * 65.31868 * 13 12 11 39 39 H 1.09003 * 109.49746 * 185.38186 * 13 12 11 40 40 H 1.09004 * 109.45769 * 181.38604 * 14 13 12 41 41 H 1.09008 * 109.45667 * 301.35478 * 14 13 12 42 42 H 0.97001 * 120.00274 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58669 * 246.19982 * 25 11 8 44 44 H 1.08998 * 109.59004 * 6.63223 * 25 11 8 45 45 H 1.09002 * 109.52410 * 62.92413 * 26 5 4 46 46 H 1.09004 * 109.52533 * 183.05059 * 26 5 4 47 47 H 1.09007 * 109.48127 * 177.62276 * 27 26 5 48 48 H 1.09000 * 109.48171 * 297.66002 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5710 -0.7708 -1.2122 6 1 3.9702 0.2431 -1.2416 7 6 4.0876 -1.5594 -2.4173 8 16 5.9005 -1.5018 -2.4456 9 8 6.3533 -0.1866 -2.7361 10 8 6.4398 -2.2384 -1.3565 11 7 6.3212 -2.3840 -3.7825 12 6 6.4671 -1.7345 -5.0923 13 6 5.5915 -2.4733 -6.1093 14 6 5.9519 -3.9606 -6.1015 15 6 5.6794 -4.5461 -4.7140 16 1 4.6288 -4.4056 -4.4598 17 6 6.0040 -6.0177 -4.7164 18 1 6.7576 -6.4055 -4.0471 19 6 5.3389 -6.8689 -5.5732 20 7 5.6219 -8.1532 -5.5750 21 14 4.0350 -6.1981 -6.7305 22 1 4.6686 -5.8024 -8.0139 23 1 3.0132 -7.2452 -6.9850 24 1 3.3866 -5.0137 -6.1125 25 6 6.5616 -3.8298 -3.6801 26 6 4.0176 -1.4601 0.0807 27 6 3.4320 -0.7098 1.2798 28 8 2.0066 -0.6742 1.1663 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 1.7148 -0.1843 -2.1399 33 1 1.6443 -1.7374 -1.2722 34 1 3.7582 -2.5956 -2.3419 35 1 3.6959 -1.1194 -3.3345 36 1 6.1478 -0.6946 -5.0222 37 1 7.5096 -1.7782 -5.4077 38 1 4.5419 -2.3518 -5.8416 39 1 5.7632 -2.0620 -7.1040 40 1 5.3473 -4.4846 -6.8419 41 1 7.0078 -4.0796 -6.3448 42 1 5.1537 -8.7522 -6.1774 43 1 7.6116 -4.0409 -3.8828 44 1 6.3045 -4.1729 -2.6780 45 1 3.6613 -2.4902 0.0862 46 1 5.1060 -1.4508 0.1413 47 1 3.7123 -1.2212 2.2008 48 1 3.8206 0.3085 1.2965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364885411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:39 Heat of formation + Delta-G solvation = -155.266138 kcal Electronic energy + Delta-G solvation = -28378.107520 eV Core-core repulsion = 24558.528193 eV Total energy + Delta-G solvation = -3819.579327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.59346 -39.50296 -38.28163 -37.09282 -36.08463 -35.16740 -33.72849 -33.17985 -32.17210 -30.12535 -28.01006 -27.04269 -25.58639 -24.49552 -23.14644 -22.78336 -21.38257 -21.02910 -19.82340 -19.01566 -18.50503 -17.58230 -17.36348 -17.08457 -16.91896 -16.62838 -15.97026 -15.61737 -15.39288 -15.38474 -15.09088 -14.86991 -14.61668 -14.34644 -14.28516 -14.05678 -13.61541 -13.36743 -13.31060 -13.22754 -13.21436 -13.10616 -12.84869 -12.79627 -12.61823 -12.42322 -12.30286 -12.14651 -12.05513 -11.99759 -11.82693 -11.49515 -11.43261 -11.27825 -11.07560 -10.91115 -10.65666 -10.46015 -9.80398 -8.27552 -6.32535 -0.77802 1.32896 1.37708 1.48781 1.59750 2.34454 2.75336 2.84243 3.08046 3.08165 3.32743 3.49626 3.66265 3.74169 3.92646 4.07304 4.09617 4.17017 4.19808 4.23520 4.32852 4.38931 4.43988 4.45578 4.52412 4.63189 4.66429 4.73918 4.74473 4.75882 4.84089 4.89192 4.99608 5.00889 5.03611 5.07706 5.10300 5.20529 5.25999 5.26920 5.32730 5.42954 5.55901 5.70531 5.80571 6.28011 6.31152 6.75494 7.33127 8.89138 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003889 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.861249 B = 7197.473580 C = 7951.510195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.071 0.929 4 C -0.135 4.135 5 C -0.081 4.081 6 H 0.095 0.905 7 C -0.611 4.611 8 S 2.606 3.394 9 O -0.980 6.980 10 O -0.985 6.985 11 N -1.002 6.002 12 C 0.118 3.882 13 C -0.133 4.133 14 C -0.123 4.123 15 C 0.004 3.996 16 H 0.036 0.964 17 C -0.521 4.521 18 H 0.034 0.966 19 C 0.012 3.988 20 N -0.951 5.951 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.306 1.306 24 H -0.237 1.237 25 C 0.147 3.853 26 C -0.189 4.189 27 C 0.063 3.937 28 O -0.398 6.398 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.265 0.735 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 21.399 5.738 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.089 0.911 4 C -0.173 4.173 5 C -0.101 4.101 6 H 0.114 0.886 7 C -0.743 4.743 8 S 2.704 3.296 9 O -0.971 6.971 10 O -0.975 6.975 11 N -0.839 5.839 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.161 4.161 15 C -0.017 4.017 16 H 0.054 0.946 17 C -0.560 4.560 18 H 0.052 0.948 19 C -0.185 4.185 20 N -0.592 5.592 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.234 1.234 24 H -0.160 1.160 25 C 0.021 3.979 26 C -0.226 4.226 27 C -0.014 4.014 28 O -0.318 6.318 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.125 0.875 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.677 21.596 6.392 24.136 hybrid contribution -0.391 -1.149 -1.015 1.582 sum -9.068 20.447 5.377 23.005 Atomic orbital electron populations 1.21787 0.91863 1.02928 1.03479 1.22346 0.96114 0.95378 0.84347 0.91118 1.22273 0.92496 1.02786 0.99790 1.21036 0.98849 0.99056 0.91179 0.88645 1.30632 1.24061 1.11175 1.08409 1.04974 0.78958 0.72943 0.72695 1.93530 1.80377 1.38905 1.84293 1.93542 1.77800 1.72707 1.53490 1.57641 1.84168 1.18248 1.23818 1.21595 1.01223 0.96475 0.81337 1.22012 1.00383 0.94608 1.00191 1.21855 1.00840 0.95606 0.97751 1.19521 0.96184 0.92717 0.93252 0.94581 1.21298 1.21397 0.92433 1.20858 0.94761 1.25890 0.99098 0.94696 0.98855 1.70064 1.44202 1.04906 1.40000 0.85814 0.78567 0.78161 0.79674 1.19273 1.23408 1.16021 1.21311 0.99668 0.77157 0.99726 1.22755 1.02299 1.01635 0.95952 1.22637 0.80442 1.00260 0.98011 1.87940 1.21481 1.78468 1.43908 0.92484 0.91663 0.89087 0.88192 0.91048 0.84131 0.81950 0.87446 0.90800 0.90811 0.88729 0.94454 0.92682 0.92656 0.92460 0.90531 0.90516 0.90248 0.87546 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.56 71.98 0.69 -1.16 16 2 C 0.08 1.21 3.27 30.63 0.10 1.31 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 4 C -0.13 -2.13 4.71 30.69 0.14 -1.99 16 5 C -0.08 -1.53 2.28 -10.68 -0.02 -1.55 16 6 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.61 -12.28 5.63 71.98 0.41 -11.87 16 8 S 2.61 72.74 5.07 -56.49 -0.29 72.45 16 9 O -0.98 -29.77 16.73 -127.65 -2.14 -31.91 16 10 O -0.98 -33.95 14.53 -127.65 -1.86 -35.81 16 11 N -1.00 -30.21 3.21 -512.28 -1.65 -31.86 16 12 C 0.12 3.00 6.31 86.36 0.55 3.54 16 13 C -0.13 -3.47 6.08 30.67 0.19 -3.28 16 14 C -0.12 -4.54 4.65 30.62 0.14 -4.39 16 15 C 0.00 0.15 1.86 -11.31 -0.02 0.13 16 16 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 17 C -0.52 -28.39 9.15 25.60 0.23 -28.16 16 18 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 19 C 0.01 0.65 5.45 84.65 0.46 1.11 16 20 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 21 Si 0.95 42.57 24.39 68.60 1.67 44.24 16 22 H -0.27 -11.34 6.86 99.48 0.68 -10.66 16 23 H -0.31 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.24 -9.36 6.53 99.48 0.65 -8.71 16 25 C 0.15 5.52 5.57 86.51 0.48 6.01 16 26 C -0.19 -4.11 5.00 30.68 0.15 -3.96 16 27 C 0.06 1.18 6.86 72.01 0.49 1.68 16 28 O -0.40 -8.32 10.41 -148.98 -1.55 -9.87 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 34 H 0.14 2.89 8.14 -2.39 -0.02 2.88 16 35 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.11 2.18 7.10 -2.38 -0.02 2.16 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.46 3.25 -2.39 -0.01 1.45 16 41 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.08 2.95 7.09 -2.39 -0.02 2.93 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.08 1.92 5.83 -2.38 -0.01 1.91 16 47 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.24 370.34 -0.67 -72.91 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.84 Total: 20.60 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.99 Total: -42.60 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.35 Total: -90.02 kcal Atomic # 8 Polarization: -72.04 SS G_CDS: -5.54 Total: -77.58 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.67 Total: 44.24 kcal Atomic # 16 Polarization: 72.74 SS G_CDS: -0.29 Total: 72.45 kcal Total: -72.24 -0.67 -72.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.357 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds