Wall clock time and date at job start Tue Mar 31 2020 17:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.49094 * 2 1 4 4 C 1.53089 * 109.48114 * 239.96848 * 2 1 3 5 5 C 1.53177 * 109.16486 * 297.62707 * 4 2 1 6 6 H 1.08993 * 109.54118 * 62.97319 * 5 4 2 7 7 C 1.52998 * 109.54454 * 183.15401 * 5 4 2 8 8 S 1.81404 * 109.47067 * 184.99876 * 7 5 4 9 9 O 1.42098 * 110.54104 * 68.37462 * 8 7 5 10 10 O 1.42102 * 110.54259 * 291.62480 * 8 7 5 11 11 N 1.65598 * 104.44718 * 179.97438 * 8 7 5 12 12 C 1.46924 * 120.62806 * 90.00395 * 11 8 7 13 13 C 1.53193 * 108.77650 * 126.40988 * 12 11 8 14 14 C 1.53040 * 109.31196 * 54.63386 * 13 12 11 15 15 C 1.53039 * 109.53841 * 298.63260 * 14 13 12 16 16 H 1.09002 * 109.49751 * 301.41561 * 15 14 13 17 17 C 1.50702 * 109.49653 * 181.34912 * 15 14 13 18 18 H 1.08001 * 119.99704 * 240.06409 * 17 15 14 19 19 C 1.37874 * 120.00032 * 60.07204 * 17 15 14 20 20 N 1.31514 * 120.00242 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00046 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47049 * 59.99390 * 21 19 17 23 23 H 1.48492 * 109.47300 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47082 * 299.99518 * 21 19 17 25 25 C 1.46927 * 120.63271 * 270.02079 * 11 8 7 26 26 C 1.53184 * 109.03380 * 303.01800 * 5 4 2 27 27 C 1.53088 * 109.16215 * 56.97919 * 26 5 4 28 28 O 1.42902 * 109.48052 * 120.02481 * 2 1 3 29 29 H 1.09002 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47450 * 300.03311 * 1 2 3 31 31 H 1.09005 * 109.47377 * 60.03162 * 1 2 3 32 32 H 1.09001 * 109.52353 * 177.72039 * 4 2 1 33 33 H 1.09002 * 109.52490 * 57.53654 * 4 2 1 34 34 H 1.09000 * 109.47553 * 65.00143 * 7 5 4 35 35 H 1.08999 * 109.47368 * 304.99944 * 7 5 4 36 36 H 1.08993 * 109.59385 * 6.62317 * 12 11 8 37 37 H 1.09006 * 109.58714 * 246.19442 * 12 11 8 38 38 H 1.08995 * 109.49859 * 294.68071 * 13 12 11 39 39 H 1.09003 * 109.52564 * 174.60003 * 13 12 11 40 40 H 1.09006 * 109.46010 * 178.61574 * 14 13 12 41 41 H 1.08995 * 109.45013 * 58.65133 * 14 13 12 42 42 H 0.96998 * 120.00437 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.58885 * 113.80261 * 25 11 8 44 44 H 1.09002 * 109.58757 * 353.37588 * 25 11 8 45 45 H 1.08997 * 109.51704 * 176.88345 * 26 5 4 46 46 H 1.08998 * 109.52218 * 297.07583 * 26 5 4 47 47 H 1.09004 * 109.48167 * 182.40275 * 27 26 5 48 48 H 1.09005 * 109.47899 * 62.37052 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5756 -2.1814 -1.2121 6 1 0.4867 -2.2180 -1.2423 7 6 2.1467 -2.9316 -2.4171 8 16 1.4775 -4.6173 -2.4525 9 8 0.0878 -4.5959 -2.7484 10 8 1.9831 -5.3775 -1.3636 11 7 2.1685 -5.3081 -3.7895 12 6 3.4497 -6.0199 -3.6866 13 6 3.2824 -7.4239 -4.2763 14 6 2.7381 -7.3123 -5.7023 15 6 1.3668 -6.6335 -5.6750 16 1 0.6868 -7.2119 -5.0495 17 6 0.8169 -6.5540 -7.0759 18 1 0.5919 -5.5927 -7.5139 19 6 0.6010 -7.7083 -7.7983 20 7 0.8754 -8.8788 -7.2650 21 14 -0.0811 -7.6098 -9.5344 22 1 0.8452 -6.8213 -10.3863 23 1 -0.2193 -8.9797 -10.0905 24 1 -1.4112 -6.9498 -9.5070 25 6 1.5123 -5.2205 -5.1011 26 6 2.0764 -2.8322 0.0810 27 6 1.5645 -2.0284 1.2791 28 8 2.0065 -0.6741 1.1664 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 3.1297 -0.6875 -1.2709 33 1 1.6421 -0.2358 -2.1399 34 1 3.2330 -2.9736 -2.3375 35 1 1.8694 -2.4112 -3.3338 36 1 3.7425 -6.0960 -2.6395 37 1 4.2143 -5.4784 -4.2436 38 1 2.5845 -7.9949 -3.6641 39 1 4.2482 -7.9290 -4.2941 40 1 2.6413 -8.3090 -6.1330 41 1 3.4245 -6.7203 -6.3075 42 1 0.7238 -9.6909 -7.7734 43 1 2.1189 -4.6138 -5.7734 44 1 0.5267 -4.7691 -4.9873 45 1 1.7036 -3.8546 0.1422 46 1 3.1664 -2.8399 0.0865 47 1 1.9530 -2.4621 2.2006 48 1 0.4749 -2.0549 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364885418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:44 Heat of formation + Delta-G solvation = -135.917778 kcal Electronic energy + Delta-G solvation = -28140.643281 eV Core-core repulsion = 24321.902962 eV Total energy + Delta-G solvation = -3818.740319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15483 -37.71597 -36.92411 -35.73740 -35.22381 -33.31986 -32.55466 -31.12954 -30.09566 -29.52254 -27.39623 -25.12261 -23.94959 -23.54664 -22.62588 -21.68611 -19.63023 -19.52076 -18.31101 -17.45185 -16.62191 -16.58103 -16.24235 -16.14670 -15.73084 -15.10424 -14.79669 -14.60845 -14.10353 -13.96228 -13.52011 -13.49208 -13.35256 -13.08499 -12.81455 -12.66520 -12.54360 -12.41997 -12.20469 -12.15019 -11.79842 -11.70045 -11.54981 -11.39749 -11.30807 -11.24449 -10.95743 -10.84861 -10.73828 -10.60925 -10.22659 -10.19729 -9.93743 -9.80154 -9.72101 -9.36794 -8.84216 -8.43906 -8.16344 -6.00591 -4.08421 0.44319 2.92872 3.30892 3.35940 3.38143 3.56789 3.98310 4.13724 4.26890 4.35502 4.41153 4.47894 4.62715 4.77674 4.94289 4.99143 5.04700 5.08244 5.19229 5.22711 5.28775 5.30145 5.40677 5.51568 5.56765 5.64198 5.68574 5.73774 5.77485 5.82180 5.87824 6.01559 6.02834 6.21635 6.32962 6.46489 6.61903 6.63458 6.88515 6.94159 7.01211 7.22998 7.44632 7.70684 7.96909 8.09791 8.39119 8.94755 9.56188 11.04833 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.003020 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.564297 B = 9268.598284 C = 9890.362484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.084 3.916 3 H 0.104 0.896 4 C -0.136 4.136 5 C -0.078 4.078 6 H 0.086 0.914 7 C -0.633 4.633 8 S 2.601 3.399 9 O -0.952 6.952 10 O -0.960 6.960 11 N -0.993 5.993 12 C 0.122 3.878 13 C -0.131 4.131 14 C -0.110 4.110 15 C 0.043 3.957 16 H 0.032 0.968 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.122 3.878 26 C -0.180 4.180 27 C 0.059 3.941 28 O -0.377 6.377 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 15.254 13.279 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.027 3.973 3 H 0.122 0.878 4 C -0.175 4.175 5 C -0.098 4.098 6 H 0.104 0.896 7 C -0.761 4.761 8 S 2.695 3.305 9 O -0.942 6.942 10 O -0.950 6.950 11 N -0.832 5.832 12 C -0.003 4.003 13 C -0.170 4.170 14 C -0.148 4.148 15 C 0.023 3.977 16 H 0.050 0.950 17 C -0.556 4.556 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.002 4.002 26 C -0.218 4.218 27 C -0.018 4.018 28 O -0.296 6.296 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.235 14.743 13.961 20.741 hybrid contribution -0.038 0.340 -1.651 1.686 sum 4.197 15.083 12.310 19.916 Atomic orbital electron populations 1.22512 0.96283 1.03146 1.02981 1.22204 0.93632 0.96426 0.85074 0.87827 1.22211 1.02184 0.94318 0.98771 1.20941 1.00682 0.96020 0.92182 0.89561 1.30850 1.13126 1.25627 1.06447 1.05210 0.74939 0.76671 0.73668 1.93597 1.29939 1.86853 1.83816 1.93538 1.81410 1.67086 1.52964 1.57614 1.34126 1.67051 1.24416 1.21432 0.83892 0.94157 1.00843 1.21936 1.00411 0.94538 1.00094 1.21595 0.97039 1.04230 0.91965 1.18922 0.93883 0.89321 0.95607 0.94992 1.21055 1.42914 0.92788 0.98814 0.92518 1.24943 0.95346 0.95413 0.98126 1.69866 1.48113 0.97401 1.37235 0.86646 0.79625 0.77026 0.84597 1.20317 1.21332 1.20224 1.21857 0.95682 1.02057 0.80574 1.22695 1.03418 1.01035 0.94613 1.22580 0.99053 0.81960 0.98203 1.87983 1.73725 1.24811 1.43090 0.91634 0.91650 0.91173 0.90523 0.90346 0.85151 0.84929 0.90292 0.92306 0.92242 0.92588 0.88714 0.94655 0.92882 0.92613 0.90308 0.88963 0.89809 0.88309 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.65 37.15 0.32 -1.17 16 2 C 0.08 0.72 3.91 -26.69 -0.10 0.61 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.17 4.92 -26.59 -0.13 -1.30 16 5 C -0.08 -0.82 1.96 -90.43 -0.18 -0.99 16 6 H 0.09 0.90 6.62 -51.93 -0.34 0.56 16 7 C -0.63 -6.89 5.62 37.16 0.21 -6.68 16 8 S 2.60 41.01 5.11 -107.50 -0.55 40.46 16 9 O -0.95 -18.42 16.59 -57.54 -0.95 -19.37 16 10 O -0.96 -16.49 14.43 -57.54 -0.83 -17.32 16 11 N -0.99 -17.20 3.22 -113.52 -0.37 -17.56 16 12 C 0.12 1.96 6.43 -3.71 -0.02 1.93 16 13 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 14 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 15 C 0.04 1.05 2.25 -91.65 -0.21 0.84 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -13.79 8.56 -34.44 -0.29 -14.09 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 2.45 5.66 -3.71 -0.02 2.43 16 26 C -0.18 -1.91 5.02 -26.59 -0.13 -2.04 16 27 C 0.06 0.56 6.52 37.20 0.24 0.80 16 28 O -0.38 -3.91 10.60 -35.23 -0.37 -4.29 16 29 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.13 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.13 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.08 1.14 6.86 -51.93 -0.36 0.78 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.59 6.86 -51.93 -0.36 1.23 16 45 H 0.09 1.09 5.85 -51.93 -0.30 0.78 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.49 6.34 -51.93 -0.33 0.17 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -31.89 369.71 -10.75 -42.63 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.14 Total: 1.64 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -0.71 Total: -23.28 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.26 Total: -41.92 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.16 Total: -40.97 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 41.01 SS G_CDS: -0.55 Total: 40.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.89 -10.75 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.284 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds