Wall clock time and date at job start Tue Mar 31 2020 17:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.49094 * 2 1 4 4 C 1.53089 * 109.48114 * 239.96848 * 2 1 3 5 5 C 1.53177 * 109.16486 * 297.62707 * 4 2 1 6 6 H 1.08993 * 109.54118 * 62.97319 * 5 4 2 7 7 C 1.52998 * 109.54454 * 183.15401 * 5 4 2 8 8 S 1.81404 * 109.47067 * 184.99876 * 7 5 4 9 9 O 1.42098 * 110.54104 * 68.37462 * 8 7 5 10 10 O 1.42102 * 110.54259 * 291.62480 * 8 7 5 11 11 N 1.65598 * 104.44718 * 179.97438 * 8 7 5 12 12 C 1.46924 * 120.62806 * 90.00395 * 11 8 7 13 13 C 1.53193 * 108.77650 * 126.40988 * 12 11 8 14 14 C 1.53040 * 109.31196 * 54.63386 * 13 12 11 15 15 C 1.53039 * 109.53841 * 298.63260 * 14 13 12 16 16 H 1.09002 * 109.49751 * 301.41561 * 15 14 13 17 17 C 1.50702 * 109.49653 * 181.34912 * 15 14 13 18 18 H 1.08001 * 119.99704 * 240.06409 * 17 15 14 19 19 C 1.37874 * 120.00032 * 60.07204 * 17 15 14 20 20 N 1.31514 * 120.00242 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00046 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47049 * 59.99390 * 21 19 17 23 23 H 1.48492 * 109.47300 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47082 * 299.99518 * 21 19 17 25 25 C 1.46927 * 120.63271 * 270.02079 * 11 8 7 26 26 C 1.53184 * 109.03380 * 303.01800 * 5 4 2 27 27 C 1.53088 * 109.16215 * 56.97919 * 26 5 4 28 28 O 1.42902 * 109.48052 * 120.02481 * 2 1 3 29 29 H 1.09002 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47450 * 300.03311 * 1 2 3 31 31 H 1.09005 * 109.47377 * 60.03162 * 1 2 3 32 32 H 1.09001 * 109.52353 * 177.72039 * 4 2 1 33 33 H 1.09002 * 109.52490 * 57.53654 * 4 2 1 34 34 H 1.09000 * 109.47553 * 65.00143 * 7 5 4 35 35 H 1.08999 * 109.47368 * 304.99944 * 7 5 4 36 36 H 1.08993 * 109.59385 * 6.62317 * 12 11 8 37 37 H 1.09006 * 109.58714 * 246.19442 * 12 11 8 38 38 H 1.08995 * 109.49859 * 294.68071 * 13 12 11 39 39 H 1.09003 * 109.52564 * 174.60003 * 13 12 11 40 40 H 1.09006 * 109.46010 * 178.61574 * 14 13 12 41 41 H 1.08995 * 109.45013 * 58.65133 * 14 13 12 42 42 H 0.96998 * 120.00437 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.58885 * 113.80261 * 25 11 8 44 44 H 1.09002 * 109.58757 * 353.37588 * 25 11 8 45 45 H 1.08997 * 109.51704 * 176.88345 * 26 5 4 46 46 H 1.08998 * 109.52218 * 297.07583 * 26 5 4 47 47 H 1.09004 * 109.48167 * 182.40275 * 27 26 5 48 48 H 1.09005 * 109.47899 * 62.37052 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5756 -2.1814 -1.2121 6 1 0.4867 -2.2180 -1.2423 7 6 2.1467 -2.9316 -2.4171 8 16 1.4775 -4.6173 -2.4525 9 8 0.0878 -4.5959 -2.7484 10 8 1.9831 -5.3775 -1.3636 11 7 2.1685 -5.3081 -3.7895 12 6 3.4497 -6.0199 -3.6866 13 6 3.2824 -7.4239 -4.2763 14 6 2.7381 -7.3123 -5.7023 15 6 1.3668 -6.6335 -5.6750 16 1 0.6868 -7.2119 -5.0495 17 6 0.8169 -6.5540 -7.0759 18 1 0.5919 -5.5927 -7.5139 19 6 0.6010 -7.7083 -7.7983 20 7 0.8754 -8.8788 -7.2650 21 14 -0.0811 -7.6098 -9.5344 22 1 0.8452 -6.8213 -10.3863 23 1 -0.2193 -8.9797 -10.0905 24 1 -1.4112 -6.9498 -9.5070 25 6 1.5123 -5.2205 -5.1011 26 6 2.0764 -2.8322 0.0810 27 6 1.5645 -2.0284 1.2791 28 8 2.0065 -0.6741 1.1664 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 3.1297 -0.6875 -1.2709 33 1 1.6421 -0.2358 -2.1399 34 1 3.2330 -2.9736 -2.3375 35 1 1.8694 -2.4112 -3.3338 36 1 3.7425 -6.0960 -2.6395 37 1 4.2143 -5.4784 -4.2436 38 1 2.5845 -7.9949 -3.6641 39 1 4.2482 -7.9290 -4.2941 40 1 2.6413 -8.3090 -6.1330 41 1 3.4245 -6.7203 -6.3075 42 1 0.7238 -9.6909 -7.7734 43 1 2.1189 -4.6138 -5.7734 44 1 0.5267 -4.7691 -4.9873 45 1 1.7036 -3.8546 0.1422 46 1 3.1664 -2.8399 0.0865 47 1 1.9530 -2.4621 2.2006 48 1 0.4749 -2.0549 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364885418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:43 Heat of formation + Delta-G solvation = -157.253141 kcal Electronic energy + Delta-G solvation = -28141.568452 eV Core-core repulsion = 24321.902962 eV Total energy + Delta-G solvation = -3819.665490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86124 -39.27926 -38.25155 -37.03706 -36.04908 -35.19447 -33.21489 -32.73534 -31.85010 -30.32639 -28.09827 -27.03445 -25.22952 -24.50331 -23.44201 -23.33362 -21.15139 -20.32924 -19.65353 -18.86396 -18.12503 -17.61579 -17.38605 -17.10974 -16.84134 -16.58186 -15.95730 -15.51704 -15.38559 -15.15059 -14.93140 -14.75270 -14.42520 -14.36784 -14.22156 -13.86147 -13.79233 -13.37370 -13.27556 -13.16764 -13.06271 -12.88950 -12.74232 -12.69246 -12.64814 -12.51335 -12.24904 -12.21159 -12.05028 -11.84719 -11.77888 -11.57106 -11.41274 -11.07035 -10.95362 -10.76419 -10.47177 -10.40234 -9.69521 -8.06479 -6.22337 -0.75852 1.43691 1.45657 1.52663 1.66424 2.45097 2.84721 2.94867 3.11680 3.20116 3.35399 3.53650 3.65171 3.83438 3.96160 4.11766 4.14324 4.27253 4.28359 4.34560 4.37689 4.40959 4.47809 4.57733 4.64173 4.64663 4.67774 4.76495 4.83075 4.87162 4.91462 4.97251 4.98246 5.08564 5.09774 5.12847 5.21030 5.29580 5.36090 5.36602 5.55114 5.65522 5.74987 5.99241 6.18222 6.26969 6.38047 6.90347 7.46017 8.97365 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.003020 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.564297 B = 9268.598284 C = 9890.362484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H 0.122 0.878 4 C -0.132 4.132 5 C -0.087 4.087 6 H 0.081 0.919 7 C -0.596 4.596 8 S 2.593 3.407 9 O -1.000 7.000 10 O -0.982 6.982 11 N -1.002 6.002 12 C 0.121 3.879 13 C -0.130 4.130 14 C -0.103 4.103 15 C 0.034 3.966 16 H -0.020 1.020 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 0.957 3.043 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.274 1.274 25 C 0.134 3.866 26 C -0.184 4.184 27 C 0.056 3.944 28 O -0.390 6.390 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.260 0.740 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 18.381 13.080 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.021 3.979 3 H 0.139 0.861 4 C -0.170 4.170 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.729 4.729 8 S 2.693 3.307 9 O -0.991 6.991 10 O -0.973 6.973 11 N -0.839 5.839 12 C -0.004 4.004 13 C -0.169 4.169 14 C -0.141 4.141 15 C 0.014 3.986 16 H -0.002 1.002 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.199 1.199 25 C 0.009 3.991 26 C -0.222 4.222 27 C -0.020 4.020 28 O -0.310 6.310 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.126 0.874 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.950 17.814 13.759 23.282 hybrid contribution -0.596 -0.592 -1.489 1.709 sum 5.354 17.222 12.270 21.813 Atomic orbital electron populations 1.22529 0.96116 1.02666 1.03735 1.22404 0.93889 0.97105 0.84477 0.86076 1.22225 1.02763 0.92494 0.99544 1.21088 1.00645 0.97414 0.91581 0.90025 1.30525 1.14548 1.19697 1.08120 1.05276 0.74016 0.78711 0.72708 1.93535 1.33186 1.88223 1.84130 1.93505 1.81237 1.69372 1.53169 1.57537 1.34308 1.68719 1.23364 1.21584 0.84121 0.92310 1.02353 1.21891 1.00752 0.97013 0.97212 1.21389 0.96417 1.01896 0.94426 1.18906 0.93698 0.91851 0.94129 1.00216 1.21508 1.42788 0.93084 0.99983 0.91881 1.25782 0.95779 0.95141 1.02102 1.70042 1.49177 0.97949 1.38643 0.85628 0.79100 0.76979 0.80030 1.18932 1.21403 1.19890 1.21502 0.96310 0.99061 0.82235 1.22719 1.03837 1.00235 0.95369 1.22625 0.99295 0.81841 0.98250 1.87968 1.74025 1.24910 1.44058 0.92716 0.91443 0.89962 0.89653 0.88618 0.81998 0.82458 0.88371 0.88791 0.95016 0.89894 0.92482 0.93701 0.93143 0.90144 0.91176 0.90753 0.89082 0.87398 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 8.65 71.98 0.62 -1.96 16 2 C 0.08 1.09 3.91 30.62 0.12 1.21 16 3 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.13 -1.74 4.92 30.68 0.15 -1.59 16 5 C -0.09 -1.57 1.96 -10.67 -0.02 -1.59 16 6 H 0.08 1.57 6.62 -2.39 -0.02 1.56 16 7 C -0.60 -10.80 5.62 71.98 0.40 -10.39 16 8 S 2.59 79.72 5.11 -56.49 -0.29 79.43 16 9 O -1.00 -39.64 16.59 -127.65 -2.12 -41.76 16 10 O -0.98 -33.47 14.43 -127.65 -1.84 -35.31 16 11 N -1.00 -33.61 3.22 -513.07 -1.65 -35.26 16 12 C 0.12 3.61 6.43 86.36 0.56 4.17 16 13 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 14 C -0.10 -4.76 4.96 30.62 0.15 -4.61 16 15 C 0.03 1.73 2.25 -11.46 -0.03 1.70 16 16 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 17 C -0.53 -29.13 8.56 25.60 0.22 -28.91 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.58 5.30 84.65 0.45 1.03 16 20 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 21 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.13 5.31 5.66 86.36 0.49 5.80 16 26 C -0.18 -3.56 5.02 30.69 0.15 -3.41 16 27 C 0.06 0.99 6.52 72.01 0.47 1.46 16 28 O -0.39 -7.18 10.60 -148.98 -1.58 -8.76 16 29 H 0.05 0.85 4.98 -2.39 -0.01 0.83 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.16 2.24 8.14 -2.39 -0.02 2.23 16 36 H 0.10 2.58 6.86 -2.39 -0.02 2.57 16 37 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.06 3.06 6.04 -2.38 -0.01 3.04 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.07 2.87 6.86 -2.39 -0.02 2.85 16 45 H 0.07 1.71 5.85 -2.39 -0.01 1.70 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 1.62 8.14 -2.38 -0.02 1.61 16 48 H 0.06 0.98 6.34 -2.38 -0.02 0.97 16 Total: -1.00 -73.23 369.71 -0.35 -73.58 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.93 Total: 18.07 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 3.93 Total: -41.75 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.41 Total: -88.85 kcal Atomic # 8 Polarization: -80.29 SS G_CDS: -5.54 Total: -85.83 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 79.72 SS G_CDS: -0.29 Total: 79.43 kcal Total: -73.23 -0.35 -73.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.675 kcal (2) G-P(sol) polarization free energy of solvation -73.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds