Wall clock time and date at job start Tue Mar 31 2020 17:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48249 * 2 1 4 4 C 1.53095 * 109.48552 * 239.97068 * 2 1 3 5 5 C 1.53175 * 109.16546 * 297.61800 * 4 2 1 6 6 H 1.09006 * 109.54057 * 62.88488 * 5 4 2 7 7 C 1.52998 * 109.61724 * 183.10736 * 5 4 2 8 8 S 1.81400 * 109.46881 * 184.60244 * 7 5 4 9 9 O 1.42102 * 110.54333 * 291.62397 * 8 7 5 10 10 O 1.42093 * 110.54755 * 68.37936 * 8 7 5 11 11 N 1.65602 * 104.44797 * 180.02562 * 8 7 5 12 12 C 1.46918 * 120.63321 * 269.71906 * 11 8 7 13 13 C 1.52764 * 109.01356 * 233.58418 * 12 11 8 14 14 C 1.53039 * 109.38127 * 305.59034 * 13 12 11 15 15 C 1.53038 * 109.53870 * 61.23365 * 14 13 12 16 16 H 1.09002 * 109.49869 * 58.59081 * 15 14 13 17 17 C 1.50711 * 109.52367 * 178.66551 * 15 14 13 18 18 H 1.08000 * 119.99660 * 119.85408 * 17 15 14 19 19 C 1.37878 * 120.00152 * 299.85923 * 17 15 14 20 20 N 1.31510 * 119.99518 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99920 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47135 * 60.00028 * 21 19 17 23 23 H 1.48495 * 109.46832 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47177 * 299.99760 * 21 19 17 25 25 C 1.46928 * 120.62839 * 89.99861 * 11 8 7 26 26 C 1.53174 * 109.03843 * 303.02208 * 5 4 2 27 27 C 1.53099 * 109.16328 * 56.98005 * 26 5 4 28 28 O 1.42902 * 109.41129 * 302.38843 * 27 26 5 29 29 H 1.09006 * 109.46819 * 300.00287 * 1 2 3 30 30 H 1.08998 * 109.47704 * 59.99605 * 1 2 3 31 31 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.52520 * 57.52799 * 4 2 1 33 33 H 1.09009 * 109.51853 * 177.71402 * 4 2 1 34 34 H 1.08999 * 109.47591 * 304.60173 * 7 5 4 35 35 H 1.08998 * 109.46911 * 64.60756 * 7 5 4 36 36 H 1.09003 * 109.58899 * 353.42210 * 12 11 8 37 37 H 1.09000 * 109.58830 * 113.84410 * 12 11 8 38 38 H 1.08997 * 109.56433 * 185.55153 * 13 12 11 39 39 H 1.09004 * 109.38371 * 65.51047 * 13 12 11 40 40 H 1.09005 * 109.46067 * 301.21317 * 14 13 12 41 41 H 1.08993 * 109.45155 * 181.25245 * 14 13 12 42 42 H 0.97007 * 119.99421 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.58759 * 246.15405 * 25 11 8 44 44 H 1.09001 * 109.58819 * 6.58402 * 25 11 8 45 45 H 1.08997 * 109.52169 * 297.07463 * 26 5 4 46 46 H 1.09002 * 109.52430 * 176.88423 * 26 5 4 47 47 H 1.09004 * 109.48051 * 182.41478 * 27 26 5 48 48 H 1.08992 * 109.48973 * 62.37893 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2495 5 6 1.5761 -2.1814 -1.2121 6 1 0.4870 -2.2181 -1.2407 7 6 2.1454 -2.9328 -2.4171 8 16 1.4844 -4.6219 -2.4438 9 8 1.9986 -5.3759 -1.3547 10 8 0.0934 -4.6085 -2.7336 11 7 2.1739 -5.3143 -3.7808 12 6 1.5093 -5.2405 -5.0890 13 6 1.3711 -6.6518 -5.6573 14 6 2.7455 -7.3242 -5.6871 15 6 3.2962 -7.4267 -4.2629 16 1 2.6035 -7.9985 -3.6453 17 6 4.6350 -8.1183 -4.2892 18 1 5.5143 -7.6065 -3.9268 19 6 4.7372 -9.4043 -4.7758 20 7 3.6663 -10.0276 -5.2166 21 14 6.3967 -10.2612 -4.8089 22 1 6.9321 -10.3569 -3.4271 23 1 6.2383 -11.6250 -5.3745 24 1 7.3391 -9.4826 -5.6521 25 6 3.4590 -6.0194 -3.6800 26 6 2.0768 -2.8322 0.0809 27 6 1.5647 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6422 -0.2359 -2.1399 33 1 3.1300 -0.6872 -1.2708 34 1 1.8615 -2.4170 -3.3344 35 1 3.2322 -2.9692 -2.3422 36 1 0.5206 -4.7967 -4.9722 37 1 2.1068 -4.6329 -5.7687 38 1 0.9693 -6.6001 -6.6692 39 1 0.6963 -7.2311 -5.0270 40 1 3.4266 -6.7315 -6.2980 41 1 2.6518 -8.3230 -6.1131 42 1 3.7384 -10.9322 -5.5593 43 1 4.2187 -5.4767 -4.2424 44 1 3.7563 -6.0895 -2.6337 45 1 3.1668 -2.8398 0.0865 46 1 1.7042 -3.8547 0.1422 47 1 1.9533 -2.4621 2.2006 48 1 0.4752 -2.0551 1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364885530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:51 Heat of formation + Delta-G solvation = -135.832250 kcal Electronic energy + Delta-G solvation = -28167.456493 eV Core-core repulsion = 24348.719883 eV Total energy + Delta-G solvation = -3818.736611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14182 -37.73043 -36.92481 -35.74266 -35.21089 -33.31542 -32.54702 -31.14752 -30.10137 -29.50928 -27.40450 -25.11887 -23.94158 -23.53575 -22.62499 -21.68400 -19.61302 -19.52505 -18.30884 -17.45328 -16.61171 -16.58044 -16.25661 -16.05059 -15.82399 -15.04464 -14.77863 -14.64653 -14.12384 -13.90479 -13.54129 -13.48973 -13.36581 -13.06055 -12.82171 -12.67004 -12.54595 -12.42470 -12.26387 -12.06494 -11.76797 -11.74747 -11.53785 -11.38795 -11.34752 -11.21939 -10.95155 -10.84397 -10.73446 -10.59235 -10.22557 -10.18143 -9.93760 -9.79736 -9.70813 -9.36498 -8.83957 -8.43753 -8.16387 -6.00359 -4.08003 0.44180 2.92821 3.31341 3.36299 3.38662 3.58377 3.98346 4.15081 4.26266 4.36092 4.41741 4.48085 4.63624 4.77805 4.95846 4.99079 5.05117 5.08924 5.18551 5.22525 5.28661 5.30408 5.42370 5.52398 5.56890 5.64434 5.67991 5.73808 5.77379 5.83527 5.89607 6.02311 6.05365 6.21813 6.33052 6.46920 6.62178 6.63343 6.88577 6.95958 7.01275 7.22776 7.44705 7.71034 7.97134 8.09885 8.39396 8.95193 9.56600 11.05145 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.003098 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.435209 B = 9036.965069 C = 9709.750892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 H 0.104 0.896 4 C -0.136 4.136 5 C -0.078 4.078 6 H 0.085 0.915 7 C -0.633 4.633 8 S 2.602 3.398 9 O -0.948 6.948 10 O -0.964 6.964 11 N -0.993 5.993 12 C 0.122 3.878 13 C -0.131 4.131 14 C -0.110 4.110 15 C 0.043 3.957 16 H 0.032 0.968 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.123 3.877 26 C -0.182 4.182 27 C 0.059 3.941 28 O -0.377 6.377 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.261 0.739 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 19.467 5.761 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.026 3.974 3 H 0.121 0.879 4 C -0.175 4.175 5 C -0.097 4.097 6 H 0.103 0.897 7 C -0.760 4.760 8 S 2.695 3.305 9 O -0.938 6.938 10 O -0.954 6.954 11 N -0.832 5.832 12 C -0.003 4.003 13 C -0.170 4.170 14 C -0.148 4.148 15 C 0.023 3.977 16 H 0.050 0.950 17 C -0.555 4.555 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.001 4.001 26 C -0.219 4.219 27 C -0.018 4.018 28 O -0.296 6.296 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.109 18.976 6.410 20.940 hybrid contribution 1.186 -0.167 -0.762 1.419 sum -4.923 18.809 5.648 20.247 Atomic orbital electron populations 1.22510 0.96363 1.03089 1.02911 1.22201 0.93559 0.96446 0.85148 0.87851 1.22210 1.02297 0.94291 0.98679 1.20932 1.00509 0.96007 0.92288 0.89699 1.30847 1.13445 1.25519 1.06228 1.05200 0.74624 0.76647 0.73994 1.93585 1.80822 1.66888 1.52509 1.93548 1.30445 1.87129 1.84286 1.57610 1.34876 1.67773 1.22962 1.21341 0.96180 0.99231 0.83586 1.21866 1.00951 0.94957 0.99272 1.21592 0.91728 1.01560 0.99933 1.18922 0.96876 0.89097 0.92835 0.94982 1.21056 0.93636 0.98975 1.41874 0.92515 1.24944 0.96487 0.97230 0.95171 1.69872 1.27995 1.12793 1.41963 0.86645 0.84260 0.78617 0.78377 1.20214 1.21341 1.20324 1.21858 0.81175 0.95516 1.01563 1.22713 1.03666 1.01052 0.94500 1.22584 0.98952 0.81900 0.98315 1.87990 1.73718 1.24848 1.43004 0.91654 0.91265 0.91656 0.90469 0.90437 0.85197 0.84877 0.90407 0.92297 0.92543 0.92268 0.94649 0.88740 0.92895 0.92647 0.90194 0.89618 0.88888 0.88232 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 8.65 37.16 0.32 -1.11 16 2 C 0.08 0.71 3.91 -26.68 -0.10 0.61 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -1.17 4.93 -26.59 -0.13 -1.30 16 5 C -0.08 -0.81 1.96 -90.44 -0.18 -0.99 16 6 H 0.08 0.86 6.62 -51.93 -0.34 0.51 16 7 C -0.63 -6.89 5.63 37.16 0.21 -6.68 16 8 S 2.60 41.02 5.11 -107.50 -0.55 40.47 16 9 O -0.95 -17.70 14.41 -57.54 -0.83 -18.53 16 10 O -0.96 -17.21 16.58 -57.54 -0.95 -18.16 16 11 N -0.99 -17.20 3.23 -113.77 -0.37 -17.57 16 12 C 0.12 1.97 6.40 -3.94 -0.03 1.94 16 13 C -0.13 -2.47 6.07 -26.83 -0.16 -2.63 16 14 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 1.04 2.25 -91.65 -0.21 0.84 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -13.78 8.56 -34.43 -0.29 -14.07 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.45 5.66 -3.71 -0.02 2.43 16 26 C -0.18 -2.04 5.01 -26.59 -0.13 -2.17 16 27 C 0.06 0.58 6.52 37.21 0.24 0.83 16 28 O -0.38 -4.01 10.60 -35.23 -0.37 -4.39 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.14 6.85 -51.93 -0.36 0.78 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.17 5.83 -51.93 -0.30 0.86 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -31.90 369.63 -10.75 -42.64 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.14 Total: 1.73 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -0.71 Total: -23.30 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.26 Total: -41.94 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.16 Total: -41.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 41.02 SS G_CDS: -0.55 Total: 40.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.90 -10.75 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.189 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds