Wall clock time and date at job start Tue Mar 31 2020 17:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48249 * 2 1 4 4 C 1.53095 * 109.48552 * 239.97068 * 2 1 3 5 5 C 1.53175 * 109.16546 * 297.61800 * 4 2 1 6 6 H 1.09006 * 109.54057 * 62.88488 * 5 4 2 7 7 C 1.52998 * 109.61724 * 183.10736 * 5 4 2 8 8 S 1.81400 * 109.46881 * 184.60244 * 7 5 4 9 9 O 1.42102 * 110.54333 * 291.62397 * 8 7 5 10 10 O 1.42093 * 110.54755 * 68.37936 * 8 7 5 11 11 N 1.65602 * 104.44797 * 180.02562 * 8 7 5 12 12 C 1.46918 * 120.63321 * 269.71906 * 11 8 7 13 13 C 1.52764 * 109.01356 * 233.58418 * 12 11 8 14 14 C 1.53039 * 109.38127 * 305.59034 * 13 12 11 15 15 C 1.53038 * 109.53870 * 61.23365 * 14 13 12 16 16 H 1.09002 * 109.49869 * 58.59081 * 15 14 13 17 17 C 1.50711 * 109.52367 * 178.66551 * 15 14 13 18 18 H 1.08000 * 119.99660 * 119.85408 * 17 15 14 19 19 C 1.37878 * 120.00152 * 299.85923 * 17 15 14 20 20 N 1.31510 * 119.99518 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99920 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47135 * 60.00028 * 21 19 17 23 23 H 1.48495 * 109.46832 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47177 * 299.99760 * 21 19 17 25 25 C 1.46928 * 120.62839 * 89.99861 * 11 8 7 26 26 C 1.53174 * 109.03843 * 303.02208 * 5 4 2 27 27 C 1.53099 * 109.16328 * 56.98005 * 26 5 4 28 28 O 1.42902 * 109.41129 * 302.38843 * 27 26 5 29 29 H 1.09006 * 109.46819 * 300.00287 * 1 2 3 30 30 H 1.08998 * 109.47704 * 59.99605 * 1 2 3 31 31 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.52520 * 57.52799 * 4 2 1 33 33 H 1.09009 * 109.51853 * 177.71402 * 4 2 1 34 34 H 1.08999 * 109.47591 * 304.60173 * 7 5 4 35 35 H 1.08998 * 109.46911 * 64.60756 * 7 5 4 36 36 H 1.09003 * 109.58899 * 353.42210 * 12 11 8 37 37 H 1.09000 * 109.58830 * 113.84410 * 12 11 8 38 38 H 1.08997 * 109.56433 * 185.55153 * 13 12 11 39 39 H 1.09004 * 109.38371 * 65.51047 * 13 12 11 40 40 H 1.09005 * 109.46067 * 301.21317 * 14 13 12 41 41 H 1.08993 * 109.45155 * 181.25245 * 14 13 12 42 42 H 0.97007 * 119.99421 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.58759 * 246.15405 * 25 11 8 44 44 H 1.09001 * 109.58819 * 6.58402 * 25 11 8 45 45 H 1.08997 * 109.52169 * 297.07463 * 26 5 4 46 46 H 1.09002 * 109.52430 * 176.88423 * 26 5 4 47 47 H 1.09004 * 109.48051 * 182.41478 * 27 26 5 48 48 H 1.08992 * 109.48973 * 62.37893 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2495 5 6 1.5761 -2.1814 -1.2121 6 1 0.4870 -2.2181 -1.2407 7 6 2.1454 -2.9328 -2.4171 8 16 1.4844 -4.6219 -2.4438 9 8 1.9986 -5.3759 -1.3547 10 8 0.0934 -4.6085 -2.7336 11 7 2.1739 -5.3143 -3.7808 12 6 1.5093 -5.2405 -5.0890 13 6 1.3711 -6.6518 -5.6573 14 6 2.7455 -7.3242 -5.6871 15 6 3.2962 -7.4267 -4.2629 16 1 2.6035 -7.9985 -3.6453 17 6 4.6350 -8.1183 -4.2892 18 1 5.5143 -7.6065 -3.9268 19 6 4.7372 -9.4043 -4.7758 20 7 3.6663 -10.0276 -5.2166 21 14 6.3967 -10.2612 -4.8089 22 1 6.9321 -10.3569 -3.4271 23 1 6.2383 -11.6250 -5.3745 24 1 7.3391 -9.4826 -5.6521 25 6 3.4590 -6.0194 -3.6800 26 6 2.0768 -2.8322 0.0809 27 6 1.5647 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6422 -0.2359 -2.1399 33 1 3.1300 -0.6872 -1.2708 34 1 1.8615 -2.4170 -3.3344 35 1 3.2322 -2.9692 -2.3422 36 1 0.5206 -4.7967 -4.9722 37 1 2.1068 -4.6329 -5.7687 38 1 0.9693 -6.6001 -6.6692 39 1 0.6963 -7.2311 -5.0270 40 1 3.4266 -6.7315 -6.2980 41 1 2.6518 -8.3230 -6.1131 42 1 3.7384 -10.9322 -5.5593 43 1 4.2187 -5.4767 -4.2424 44 1 3.7563 -6.0895 -2.6337 45 1 3.1668 -2.8398 0.0865 46 1 1.7042 -3.8547 0.1422 47 1 1.9533 -2.4621 2.2006 48 1 0.4752 -2.0551 1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364885530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:51 Heat of formation + Delta-G solvation = -157.209971 kcal Electronic energy + Delta-G solvation = -28168.383501 eV Core-core repulsion = 24348.719883 eV Total energy + Delta-G solvation = -3819.663618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86254 -39.29238 -38.25127 -37.03685 -36.04952 -35.19404 -33.21434 -32.74640 -31.86207 -30.33137 -28.09010 -27.03317 -25.23775 -24.50709 -23.45562 -23.31657 -21.15026 -20.33013 -19.65120 -18.86493 -18.12954 -17.60388 -17.33837 -17.15672 -16.89885 -16.52343 -15.96259 -15.51369 -15.40513 -15.15388 -14.90575 -14.76988 -14.44417 -14.35736 -14.22429 -13.89301 -13.77447 -13.36347 -13.23068 -13.20176 -13.04580 -12.90783 -12.78985 -12.69103 -12.56917 -12.53877 -12.25347 -12.21073 -12.04891 -11.85763 -11.77563 -11.56895 -11.40640 -11.06677 -10.95476 -10.76241 -10.47082 -10.40438 -9.69685 -8.06608 -6.22173 -0.75829 1.43548 1.45485 1.52449 1.66511 2.45036 2.84881 2.94547 3.12016 3.20167 3.35496 3.53000 3.65451 3.83528 3.96041 4.12112 4.14735 4.26277 4.27442 4.35407 4.36386 4.41906 4.46598 4.58373 4.64154 4.65228 4.67407 4.76275 4.82810 4.86896 4.92052 4.97688 4.98727 5.08584 5.09703 5.13540 5.21891 5.29590 5.35768 5.37864 5.55322 5.65553 5.74825 5.99489 6.18272 6.27296 6.38150 6.90500 7.46115 8.97321 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.003098 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.435209 B = 9036.965069 C = 9709.750892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.077 3.923 3 H 0.121 0.879 4 C -0.131 4.131 5 C -0.085 4.085 6 H 0.089 0.911 7 C -0.596 4.596 8 S 2.593 3.407 9 O -0.990 6.990 10 O -0.992 6.992 11 N -1.002 6.002 12 C 0.120 3.880 13 C -0.130 4.130 14 C -0.103 4.103 15 C 0.034 3.966 16 H -0.020 1.020 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.135 3.865 26 C -0.188 4.188 27 C 0.058 3.942 28 O -0.392 6.392 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.030 0.970 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.259 0.741 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 22.954 4.959 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.020 3.980 3 H 0.139 0.861 4 C -0.170 4.170 5 C -0.105 4.105 6 H 0.107 0.893 7 C -0.729 4.729 8 S 2.693 3.307 9 O -0.981 6.981 10 O -0.982 6.982 11 N -0.839 5.839 12 C -0.005 4.005 13 C -0.169 4.169 14 C -0.141 4.141 15 C 0.014 3.986 16 H -0.002 1.002 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.782 3.218 22 H -0.199 1.199 23 H -0.214 1.214 24 H -0.190 1.190 25 C 0.010 3.990 26 C -0.226 4.226 27 C -0.018 4.018 28 O -0.312 6.312 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.289 22.412 5.597 23.698 hybrid contribution 0.869 -1.194 -0.443 1.542 sum -4.420 21.218 5.154 22.278 Atomic orbital electron populations 1.22519 0.95785 1.02743 1.03846 1.22437 0.94151 0.97046 0.84408 0.86125 1.22226 1.02566 0.92461 0.99739 1.21082 1.00885 0.97309 0.91215 0.89322 1.30525 1.14173 1.19732 1.08472 1.05276 0.74026 0.78624 0.72788 1.93535 1.81055 1.69746 1.53755 1.93505 1.32188 1.88277 1.84267 1.57537 1.33807 1.68844 1.23746 1.21500 0.97927 0.97514 0.83533 1.21823 0.97967 0.96405 1.00726 1.21387 0.94168 1.00141 0.98428 1.18903 0.94859 0.91331 0.93462 1.00169 1.21505 0.94816 0.99587 1.41404 0.91938 1.25775 0.99886 0.98127 0.94989 1.70046 1.30011 1.12888 1.42849 0.85636 0.80230 0.77447 0.78475 1.19923 1.21380 1.18966 1.21493 0.83083 0.93398 1.01018 1.22740 1.03562 1.00300 0.95954 1.22598 0.99396 0.81809 0.98029 1.87973 1.74142 1.24839 1.44205 0.91541 0.89612 0.92602 0.88034 0.90164 0.81517 0.82933 0.88543 0.88700 0.89792 0.95067 0.93691 0.92500 0.93151 0.90278 0.91018 0.89809 0.90955 0.87798 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.65 71.98 0.62 -1.72 16 2 C 0.08 1.06 3.91 30.63 0.12 1.18 16 3 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.13 -1.71 4.93 30.68 0.15 -1.56 16 5 C -0.08 -1.52 1.96 -10.68 -0.02 -1.54 16 6 H 0.09 1.56 6.62 -2.38 -0.02 1.54 16 7 C -0.60 -10.78 5.63 71.98 0.41 -10.37 16 8 S 2.59 79.66 5.11 -56.49 -0.29 79.37 16 9 O -0.99 -38.12 14.41 -127.65 -1.84 -39.96 16 10 O -0.99 -34.85 16.58 -127.65 -2.12 -36.97 16 11 N -1.00 -33.61 3.23 -513.85 -1.66 -35.27 16 12 C 0.12 3.59 6.40 86.22 0.55 4.15 16 13 C -0.13 -4.88 6.07 30.53 0.19 -4.69 16 14 C -0.10 -4.76 4.96 30.62 0.15 -4.60 16 15 C 0.03 1.74 2.25 -11.46 -0.03 1.72 16 16 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 17 C -0.53 -29.14 8.56 25.60 0.22 -28.92 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 19 C 0.01 0.60 5.30 84.66 0.45 1.05 16 20 N -0.92 -53.85 11.32 21.45 0.24 -53.61 16 21 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 C 0.13 5.35 5.66 86.36 0.49 5.84 16 26 C -0.19 -4.01 5.01 30.69 0.15 -3.86 16 27 C 0.06 1.09 6.52 72.02 0.47 1.56 16 28 O -0.39 -7.58 10.60 -148.98 -1.58 -9.16 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.79 4.98 -2.39 -0.01 0.77 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 2.56 6.85 -2.39 -0.02 2.55 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.06 3.04 6.05 -2.39 -0.01 3.03 16 42 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 43 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.07 2.92 6.86 -2.39 -0.02 2.91 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.07 1.85 5.83 -2.39 -0.01 1.84 16 47 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.06 1.07 6.34 -2.39 -0.02 1.05 16 Total: -1.00 -73.43 369.63 -0.36 -73.79 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.93 Total: 18.08 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.92 Total: -41.76 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -1.42 Total: -88.88 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: -5.53 Total: -86.09 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 79.66 SS G_CDS: -0.29 Total: 79.37 kcal Total: -73.43 -0.36 -73.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364885530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.417 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds