Wall clock time and date at job start Tue Mar 31 2020 17:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47361 * 2 1 4 4 C 1.53089 * 109.47932 * 120.02597 * 2 1 3 5 5 C 1.53178 * 109.16054 * 177.59341 * 4 2 1 6 6 H 1.08998 * 109.54040 * 62.97663 * 5 4 2 7 7 C 1.53001 * 109.54255 * 183.15002 * 5 4 2 8 8 S 1.81397 * 109.47267 * 185.00073 * 7 5 4 9 9 O 1.42098 * 110.54172 * 68.37462 * 8 7 5 10 10 O 1.42097 * 110.54166 * 291.62250 * 8 7 5 11 11 N 1.65605 * 104.45020 * 179.97438 * 8 7 5 12 12 C 1.46499 * 119.99782 * 89.99811 * 11 8 7 13 13 C 1.50701 * 109.46992 * 94.99996 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.46502 * 119.99873 * 269.99839 * 11 8 7 22 22 C 1.52993 * 109.47176 * 265.00002 * 21 11 8 23 23 C 1.53001 * 117.50103 * 243.62531 * 22 21 11 24 24 C 1.52996 * 117.50084 * 175.00076 * 22 21 11 25 25 C 1.53167 * 109.03661 * 303.01708 * 5 4 2 26 26 C 1.53091 * 109.16541 * 56.98254 * 25 5 4 27 27 O 1.42905 * 109.47904 * 239.96702 * 2 1 3 28 28 H 1.08995 * 109.47025 * 299.97655 * 1 2 3 29 29 H 1.08998 * 109.46934 * 59.97887 * 1 2 3 30 30 H 1.09002 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.52234 * 57.68395 * 4 2 1 32 32 H 1.09004 * 109.57426 * 297.52793 * 4 2 1 33 33 H 1.08996 * 109.47095 * 64.99675 * 7 5 4 34 34 H 1.09007 * 109.47050 * 305.00231 * 7 5 4 35 35 H 1.09002 * 109.47391 * 334.99987 * 12 11 8 36 36 H 1.09001 * 109.46813 * 215.00043 * 12 11 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47222 * 25.00345 * 21 11 8 39 39 H 1.09000 * 109.46517 * 144.99933 * 21 11 8 40 40 H 1.09008 * 115.55069 * 29.32804 * 22 21 11 41 41 H 1.09007 * 117.49532 * 359.97438 * 23 22 21 42 42 H 1.08997 * 117.50168 * 145.01629 * 23 22 21 43 43 H 1.09003 * 117.50431 * 214.97944 * 24 22 21 44 44 H 1.09001 * 117.49931 * 359.97438 * 24 22 21 45 45 H 1.09005 * 109.52274 * 176.88570 * 25 5 4 46 46 H 1.09003 * 109.52542 * 297.07422 * 25 5 4 47 47 H 1.09000 * 109.48461 * 182.40684 * 26 25 5 48 48 H 1.08997 * 109.49128 * 62.37701 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9689 0.2436 1.2424 7 6 4.0878 -1.5592 2.4173 8 16 5.9001 -1.4907 2.4529 9 8 6.3436 -0.1735 2.7486 10 8 6.4482 -2.2211 1.3641 11 7 6.3208 -2.3725 3.7900 12 6 6.5605 -3.8129 3.6719 13 6 8.0350 -4.0632 3.4867 14 1 8.7246 -3.2325 3.4602 15 6 8.5037 -5.3529 3.3523 16 7 7.6640 -6.3645 3.3851 17 14 10.3315 -5.6632 3.1235 18 1 11.0742 -5.1319 4.2946 19 1 10.5744 -7.1233 3.0036 20 1 10.7988 -4.9812 1.8899 21 6 6.4533 -1.7121 5.0910 22 6 7.9182 -1.3390 5.3268 23 6 8.6381 -2.0090 6.4988 24 6 8.2482 -0.5320 6.5840 25 6 4.0176 -1.4600 -0.0807 26 6 3.4308 -0.7094 -1.2790 27 8 2.0066 -0.6743 -1.1664 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6443 -1.7373 1.2710 32 1 1.7148 -0.1851 2.1405 33 1 3.7649 -2.5972 2.3379 34 1 3.6896 -1.1240 3.3340 35 1 6.0150 -4.2027 2.8124 36 1 6.2178 -4.3137 4.5773 37 1 7.9937 -7.2718 3.2901 38 1 5.8419 -0.8098 5.1044 39 1 6.1195 -2.3889 5.8776 40 1 8.5013 -1.1331 4.4290 41 1 8.0678 -2.7153 7.1023 42 1 9.6948 -2.2442 6.3724 43 1 9.0485 0.2047 6.5136 44 1 7.4215 -0.2664 7.2430 45 1 5.1059 -1.4496 -0.1419 46 1 3.6614 -2.4901 -0.0862 47 1 3.7101 -1.2204 -2.2004 48 1 3.8192 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365034197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:15 Heat of formation + Delta-G solvation = -104.941436 kcal Electronic energy + Delta-G solvation = -28076.545912 eV Core-core repulsion = 24259.148828 eV Total energy + Delta-G solvation = -3817.397084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.71058 -37.47049 -36.50336 -35.40505 -35.03566 -34.66853 -32.93896 -32.34117 -29.09006 -27.83221 -27.16499 -25.39936 -23.58315 -22.34421 -21.87340 -21.84758 -20.36193 -20.26421 -18.20746 -16.98418 -16.63376 -16.42778 -16.07301 -15.91045 -15.62343 -15.13711 -14.83488 -14.54129 -14.32401 -14.13703 -13.83571 -13.27470 -13.06821 -12.71170 -12.59476 -12.52897 -12.41672 -12.33615 -12.03095 -11.74349 -11.52348 -11.47197 -11.30673 -11.28066 -11.15284 -11.06543 -11.05275 -10.96528 -10.73466 -10.55139 -10.47987 -10.15521 -10.02743 -9.82408 -9.67649 -9.51525 -9.31538 -8.39093 -8.06876 -6.01695 -4.02887 0.78627 3.29254 3.35905 3.39416 3.44611 3.62890 4.23836 4.33767 4.38278 4.47412 4.53441 4.56432 4.72177 4.80911 4.99807 5.05584 5.15672 5.19996 5.26533 5.29932 5.34715 5.36873 5.38683 5.45381 5.48651 5.57913 5.61757 5.71050 5.76121 5.83238 5.83940 5.88718 5.97061 5.99405 6.06444 6.18980 6.21530 6.38713 6.50708 6.57644 6.81961 7.10803 7.19481 7.38557 7.59353 7.96576 8.25882 8.98530 9.60891 11.07488 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003820 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.165416 B = 7327.990110 C = 8502.752510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.137 4.137 5 C -0.075 4.075 6 H 0.081 0.919 7 C -0.639 4.639 8 S 2.601 3.399 9 O -0.971 6.971 10 O -0.933 6.933 11 N -0.984 5.984 12 C 0.257 3.743 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.900 5.900 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.167 3.833 22 C -0.143 4.143 23 C -0.164 4.164 24 C -0.193 4.193 25 C -0.182 4.182 26 C 0.065 3.935 27 O -0.381 6.381 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 12.308 -0.648 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.076 0.924 4 C -0.175 4.175 5 C -0.095 4.095 6 H 0.099 0.901 7 C -0.765 4.765 8 S 2.693 3.307 9 O -0.961 6.961 10 O -0.923 6.923 11 N -0.822 5.822 12 C 0.135 3.865 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.540 5.540 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.040 3.960 22 C -0.163 4.163 23 C -0.201 4.201 24 C -0.230 4.230 25 C -0.220 4.220 26 C -0.012 4.012 27 O -0.300 6.300 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.433 12.413 -1.376 16.932 hybrid contribution 0.706 -0.565 0.502 1.035 sum -10.727 11.848 -0.875 16.006 Atomic orbital electron populations 1.21763 0.93053 1.03020 1.02323 1.22124 0.95078 0.95067 0.85245 0.92370 1.22255 0.94270 1.02532 0.98484 1.20871 0.97270 0.98811 0.92534 0.90057 1.30902 1.30299 1.09603 1.05717 1.05300 0.77031 0.73860 0.74526 1.93535 1.78932 1.39120 1.84526 1.93620 1.74405 1.71905 1.52403 1.57486 1.81953 1.21363 1.21418 1.19084 0.97321 0.72269 0.97780 1.21391 0.92527 0.92320 1.48913 0.92040 1.24886 0.97815 0.96019 0.95306 1.69900 1.34300 0.98933 1.50863 0.86646 0.85550 0.76923 0.78861 1.20256 1.21335 1.20130 1.20596 0.93976 0.95601 0.85825 1.22628 0.97678 1.02962 0.93066 1.22868 1.01169 0.93995 1.02088 1.22960 1.03294 0.94921 1.01866 1.22714 1.03382 1.01544 0.94337 1.22559 0.80565 0.99600 0.98474 1.87921 1.21269 1.77987 1.42813 0.91122 0.91864 0.91717 0.90412 0.90608 0.84922 0.85606 0.94516 0.94812 0.92810 0.91512 0.90781 0.87697 0.88949 0.89327 0.89459 0.89365 0.88702 0.89554 0.88189 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 37.16 0.36 -0.83 16 2 C 0.08 0.84 3.26 -26.68 -0.09 0.76 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.14 -1.43 4.70 -26.59 -0.13 -1.56 16 5 C -0.08 -0.94 2.27 -90.44 -0.21 -1.15 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.64 -8.56 5.62 37.16 0.21 -8.35 16 8 S 2.60 47.88 4.98 -107.50 -0.54 47.35 16 9 O -0.97 -19.07 16.98 -57.54 -0.98 -20.05 16 10 O -0.93 -20.70 14.83 -57.54 -0.85 -21.56 16 11 N -0.98 -19.39 2.73 -115.67 -0.32 -19.71 16 12 C 0.26 6.17 5.04 -5.19 -0.03 6.14 16 13 C -0.51 -13.92 8.96 -34.44 -0.31 -14.23 16 14 H 0.06 1.69 7.15 -52.49 -0.38 1.32 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.17 2.84 5.56 -4.04 -0.02 2.81 16 22 C -0.14 -2.57 5.16 -90.63 -0.47 -3.03 16 23 C -0.16 -2.71 10.18 -26.73 -0.27 -2.98 16 24 C -0.19 -2.78 10.25 -26.73 -0.27 -3.05 16 25 C -0.18 -2.45 5.02 -26.60 -0.13 -2.58 16 26 C 0.06 0.75 6.84 37.20 0.25 1.00 16 27 O -0.38 -4.68 10.41 -35.23 -0.37 -5.05 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.13 1.37 8.14 -51.92 -0.42 0.94 16 35 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 36 H 0.03 0.83 8.00 -51.93 -0.42 0.41 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 0.96 7.61 -51.93 -0.39 0.57 16 39 H 0.07 1.17 7.74 -51.93 -0.40 0.76 16 40 H 0.10 2.13 7.91 -51.92 -0.41 1.72 16 41 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.42 5.85 -51.93 -0.30 1.12 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -32.71 392.29 -11.21 -43.92 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.59 Total: 3.02 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -1.20 Total: -25.44 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.42 Total: -44.88 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -2.20 Total: -46.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.54 Total: 47.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.71 -11.21 -43.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.025 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds