Wall clock time and date at job start Tue Mar 31 2020 17:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47361 * 2 1 4 4 C 1.53089 * 109.47932 * 120.02597 * 2 1 3 5 5 C 1.53178 * 109.16054 * 177.59341 * 4 2 1 6 6 H 1.08998 * 109.54040 * 62.97663 * 5 4 2 7 7 C 1.53001 * 109.54255 * 183.15002 * 5 4 2 8 8 S 1.81397 * 109.47267 * 185.00073 * 7 5 4 9 9 O 1.42098 * 110.54172 * 68.37462 * 8 7 5 10 10 O 1.42097 * 110.54166 * 291.62250 * 8 7 5 11 11 N 1.65605 * 104.45020 * 179.97438 * 8 7 5 12 12 C 1.46499 * 119.99782 * 89.99811 * 11 8 7 13 13 C 1.50701 * 109.46992 * 94.99996 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.46502 * 119.99873 * 269.99839 * 11 8 7 22 22 C 1.52993 * 109.47176 * 265.00002 * 21 11 8 23 23 C 1.53001 * 117.50103 * 243.62531 * 22 21 11 24 24 C 1.52996 * 117.50084 * 175.00076 * 22 21 11 25 25 C 1.53167 * 109.03661 * 303.01708 * 5 4 2 26 26 C 1.53091 * 109.16541 * 56.98254 * 25 5 4 27 27 O 1.42905 * 109.47904 * 239.96702 * 2 1 3 28 28 H 1.08995 * 109.47025 * 299.97655 * 1 2 3 29 29 H 1.08998 * 109.46934 * 59.97887 * 1 2 3 30 30 H 1.09002 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.52234 * 57.68395 * 4 2 1 32 32 H 1.09004 * 109.57426 * 297.52793 * 4 2 1 33 33 H 1.08996 * 109.47095 * 64.99675 * 7 5 4 34 34 H 1.09007 * 109.47050 * 305.00231 * 7 5 4 35 35 H 1.09002 * 109.47391 * 334.99987 * 12 11 8 36 36 H 1.09001 * 109.46813 * 215.00043 * 12 11 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47222 * 25.00345 * 21 11 8 39 39 H 1.09000 * 109.46517 * 144.99933 * 21 11 8 40 40 H 1.09008 * 115.55069 * 29.32804 * 22 21 11 41 41 H 1.09007 * 117.49532 * 359.97438 * 23 22 21 42 42 H 1.08997 * 117.50168 * 145.01629 * 23 22 21 43 43 H 1.09003 * 117.50431 * 214.97944 * 24 22 21 44 44 H 1.09001 * 117.49931 * 359.97438 * 24 22 21 45 45 H 1.09005 * 109.52274 * 176.88570 * 25 5 4 46 46 H 1.09003 * 109.52542 * 297.07422 * 25 5 4 47 47 H 1.09000 * 109.48461 * 182.40684 * 26 25 5 48 48 H 1.08997 * 109.49128 * 62.37701 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9689 0.2436 1.2424 7 6 4.0878 -1.5592 2.4173 8 16 5.9001 -1.4907 2.4529 9 8 6.3436 -0.1735 2.7486 10 8 6.4482 -2.2211 1.3641 11 7 6.3208 -2.3725 3.7900 12 6 6.5605 -3.8129 3.6719 13 6 8.0350 -4.0632 3.4867 14 1 8.7246 -3.2325 3.4602 15 6 8.5037 -5.3529 3.3523 16 7 7.6640 -6.3645 3.3851 17 14 10.3315 -5.6632 3.1235 18 1 11.0742 -5.1319 4.2946 19 1 10.5744 -7.1233 3.0036 20 1 10.7988 -4.9812 1.8899 21 6 6.4533 -1.7121 5.0910 22 6 7.9182 -1.3390 5.3268 23 6 8.6381 -2.0090 6.4988 24 6 8.2482 -0.5320 6.5840 25 6 4.0176 -1.4600 -0.0807 26 6 3.4308 -0.7094 -1.2790 27 8 2.0066 -0.6743 -1.1664 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6443 -1.7373 1.2710 32 1 1.7148 -0.1851 2.1405 33 1 3.7649 -2.5972 2.3379 34 1 3.6896 -1.1240 3.3340 35 1 6.0150 -4.2027 2.8124 36 1 6.2178 -4.3137 4.5773 37 1 7.9937 -7.2718 3.2901 38 1 5.8419 -0.8098 5.1044 39 1 6.1195 -2.3889 5.8776 40 1 8.5013 -1.1331 4.4290 41 1 8.0678 -2.7153 7.1023 42 1 9.6948 -2.2442 6.3724 43 1 9.0485 0.2047 6.5136 44 1 7.4215 -0.2664 7.2430 45 1 5.1059 -1.4496 -0.1419 46 1 3.6614 -2.4901 -0.0862 47 1 3.7101 -1.2204 -2.2004 48 1 3.8192 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365034197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:14 Heat of formation + Delta-G solvation = -125.920545 kcal Electronic energy + Delta-G solvation = -28077.455635 eV Core-core repulsion = 24259.148828 eV Total energy + Delta-G solvation = -3818.306807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.59933 -38.84362 -38.05500 -36.89221 -36.31424 -36.03611 -34.35158 -33.71788 -30.12338 -29.62698 -27.99178 -27.03292 -24.63875 -24.11364 -23.10661 -22.72824 -21.65629 -21.27415 -19.68515 -18.58148 -18.42233 -17.48669 -17.41388 -17.12666 -16.84475 -16.46437 -16.26273 -15.84516 -15.46331 -15.33834 -14.97742 -14.81932 -14.37802 -14.20339 -13.93422 -13.55329 -13.41905 -13.34460 -13.24556 -13.14996 -13.02644 -12.90669 -12.79980 -12.70642 -12.53720 -12.39197 -12.27541 -12.24799 -12.13689 -12.00798 -11.96201 -11.59518 -11.40820 -11.19475 -11.14746 -10.66157 -10.51524 -10.46445 -9.70310 -8.14909 -6.21600 -0.63300 1.37012 1.39976 1.46503 1.83111 2.42953 2.81455 2.98831 3.06544 3.16522 3.24560 3.37130 3.54535 3.68276 3.84959 3.93390 4.02422 4.13280 4.17073 4.21871 4.25637 4.30268 4.36697 4.45825 4.53865 4.56343 4.66268 4.73823 4.75604 4.84239 4.86029 4.89265 4.99321 5.01618 5.04216 5.08786 5.13373 5.24359 5.27595 5.34297 5.35452 5.41322 5.52586 5.77463 5.98210 6.20287 6.27716 6.84628 7.44678 8.92799 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003820 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.165416 B = 7327.990110 C = 8502.752510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.069 0.931 4 C -0.132 4.132 5 C -0.081 4.081 6 H 0.091 0.909 7 C -0.606 4.606 8 S 2.593 3.407 9 O -0.989 6.989 10 O -0.985 6.985 11 N -0.991 5.991 12 C 0.272 3.728 13 C -0.521 4.521 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.282 1.282 21 C 0.159 3.841 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.156 4.156 25 C -0.189 4.189 26 C 0.065 3.935 27 O -0.396 6.396 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.018 0.982 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.765 14.020 0.712 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.171 4.171 5 C -0.101 4.101 6 H 0.109 0.891 7 C -0.738 4.738 8 S 2.691 3.309 9 O -0.979 6.979 10 O -0.976 6.976 11 N -0.828 5.828 12 C 0.149 3.851 13 C -0.561 4.561 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.568 5.568 17 Si 0.768 3.232 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.208 1.208 21 C 0.034 3.966 22 C -0.196 4.196 23 C -0.213 4.213 24 C -0.194 4.194 25 C -0.227 4.227 26 C -0.012 4.012 27 O -0.315 6.315 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.137 0.863 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.267 14.141 0.008 19.390 hybrid contribution 1.234 -1.012 0.041 1.597 sum -12.033 13.129 0.049 17.809 Atomic orbital electron populations 1.21781 0.91470 1.03064 1.03547 1.22387 0.96360 0.95339 0.84338 0.91298 1.22270 0.91916 1.02980 0.99887 1.21030 0.99195 0.98810 0.91103 0.89107 1.30586 1.23739 1.11033 1.08412 1.05289 0.79358 0.72954 0.73299 1.93501 1.80790 1.39271 1.84376 1.93559 1.77283 1.72667 1.54078 1.57330 1.83168 1.19450 1.22837 1.18618 0.95133 0.74871 0.96500 1.21686 0.94244 0.91965 1.48160 0.93385 1.25573 1.01433 0.96077 0.95421 1.69979 1.35715 0.99155 1.51924 0.85854 0.81516 0.77133 0.78680 1.19171 1.20343 1.20803 1.20881 0.93966 0.96877 0.84895 1.22610 0.98087 1.06031 0.92906 1.22896 1.00468 0.96139 1.01816 1.23068 1.03883 0.93431 0.99010 1.22739 1.02059 1.01642 0.96250 1.22575 0.80599 1.00109 0.97871 1.87913 1.21174 1.78465 1.43985 0.88912 0.91683 0.92255 0.90694 0.87879 0.84121 0.81675 0.96376 0.95308 0.92714 0.88411 0.89456 0.91336 0.88409 0.90545 0.88463 0.86335 0.90976 0.90522 0.87632 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.57 71.98 0.69 -1.20 16 2 C 0.07 1.29 3.26 30.63 0.10 1.39 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.13 -2.31 4.70 30.68 0.14 -2.17 16 5 C -0.08 -1.86 2.27 -10.68 -0.02 -1.89 16 6 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 7 C -0.61 -14.87 5.62 71.98 0.40 -14.47 16 8 S 2.59 95.92 4.98 -56.49 -0.28 95.64 16 9 O -0.99 -38.66 16.98 -127.65 -2.17 -40.83 16 10 O -0.99 -45.86 14.83 -127.65 -1.89 -47.75 16 11 N -0.99 -39.25 2.73 -519.85 -1.42 -40.67 16 12 C 0.27 13.40 5.04 85.63 0.43 13.83 16 13 C -0.52 -29.23 8.96 25.60 0.23 -29.00 16 14 H 0.05 2.76 7.15 -2.91 -0.02 2.74 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 17 Si 0.94 45.52 29.54 68.60 2.03 47.55 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 21 C 0.16 5.22 5.56 86.38 0.48 5.71 16 22 C -0.18 -6.27 5.16 -10.80 -0.06 -6.32 16 23 C -0.18 -5.73 10.18 30.59 0.31 -5.42 16 24 C -0.16 -4.16 10.25 30.59 0.31 -3.84 16 25 C -0.19 -5.06 5.02 30.68 0.15 -4.91 16 26 C 0.07 1.46 6.84 72.01 0.49 1.96 16 27 O -0.40 -9.11 10.41 -148.98 -1.55 -10.66 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.17 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.02 0.96 7.61 -2.39 -0.02 0.94 16 36 H 0.03 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.10 2.54 7.61 -2.39 -0.02 2.53 16 39 H 0.09 2.60 7.74 -2.39 -0.02 2.58 16 40 H 0.07 2.91 7.91 -2.38 -0.02 2.90 16 41 H 0.10 3.03 8.03 -2.38 -0.02 3.01 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.07 2.26 5.85 -2.38 -0.01 2.25 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.43 392.29 0.04 -73.38 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.91 Total: 22.51 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 4.13 Total: -45.11 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -1.13 Total: -94.73 kcal Atomic # 8 Polarization: -93.63 SS G_CDS: -5.61 Total: -99.24 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 95.92 SS G_CDS: -0.28 Total: 95.64 kcal Total: -73.43 0.04 -73.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.539 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds