Wall clock time and date at job start Tue Mar 31 2020 17:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.48749 * 2 1 4 4 C 1.53095 * 109.47936 * 239.97444 * 2 1 3 5 5 C 1.53178 * 109.16356 * 297.62319 * 4 2 1 6 6 H 1.09005 * 109.54484 * 62.97708 * 5 4 2 7 7 C 1.52992 * 109.54487 * 183.15623 * 5 4 2 8 8 S 1.81403 * 109.47317 * 185.00044 * 7 5 4 9 9 O 1.42105 * 110.54404 * 68.37227 * 8 7 5 10 10 O 1.42101 * 110.53994 * 291.62606 * 8 7 5 11 11 N 1.65591 * 104.45164 * 179.97438 * 8 7 5 12 12 C 1.46498 * 120.00456 * 269.99901 * 11 8 7 13 13 C 1.50695 * 109.47417 * 265.00195 * 12 11 8 14 14 H 1.08000 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99860 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00306 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46887 * 90.00019 * 17 15 13 19 19 H 1.48502 * 109.47322 * 209.99761 * 17 15 13 20 20 H 1.48503 * 109.47117 * 330.00055 * 17 15 13 21 21 C 1.46505 * 119.99950 * 90.00009 * 11 8 7 22 22 C 1.52997 * 109.47212 * 265.00044 * 21 11 8 23 23 C 1.52998 * 117.50310 * 243.74638 * 22 21 11 24 24 C 1.52996 * 117.50163 * 175.08612 * 22 21 11 25 25 C 1.53183 * 109.03733 * 303.02468 * 5 4 2 26 26 C 1.53094 * 109.16283 * 56.97548 * 25 5 4 27 27 O 1.42897 * 109.41682 * 302.39361 * 26 25 5 28 28 H 1.09003 * 109.47231 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47226 * 300.02700 * 1 2 3 30 30 H 1.08999 * 109.47357 * 60.03253 * 1 2 3 31 31 H 1.08997 * 109.52122 * 177.72158 * 4 2 1 32 32 H 1.08995 * 109.57533 * 57.55723 * 4 2 1 33 33 H 1.08999 * 109.47581 * 64.99861 * 7 5 4 34 34 H 1.08999 * 109.47185 * 304.99388 * 7 5 4 35 35 H 1.08999 * 109.46835 * 25.00228 * 12 11 8 36 36 H 1.09001 * 109.47298 * 144.99801 * 12 11 8 37 37 H 0.96998 * 119.99922 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47068 * 25.00104 * 21 11 8 39 39 H 1.09001 * 109.47372 * 145.00192 * 21 11 8 40 40 H 1.09008 * 115.55245 * 29.41332 * 22 21 11 41 41 H 1.09000 * 117.49561 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.50593 * 145.01245 * 23 22 21 43 43 H 1.09004 * 117.49898 * 214.97822 * 24 22 21 44 44 H 1.09005 * 117.49813 * 359.97438 * 24 22 21 45 45 H 1.08993 * 109.52259 * 176.88782 * 25 5 4 46 46 H 1.09006 * 109.51754 * 297.07465 * 25 5 4 47 47 H 1.08998 * 109.47587 * 182.41259 * 26 25 5 48 48 H 1.08997 * 109.48759 * 62.38457 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5758 -2.1813 -1.2123 6 1 0.4868 -2.2180 -1.2425 7 6 2.1468 -2.9314 -2.4172 8 16 1.4776 -4.6171 -2.4528 9 8 0.0879 -4.5958 -2.7487 10 8 1.9833 -5.3773 -1.3640 11 7 2.1686 -5.3079 -3.7898 12 6 1.5021 -5.2126 -5.0909 13 6 0.6743 -6.4502 -5.3232 14 1 0.6477 -7.2300 -4.5764 15 6 -0.0491 -6.5871 -6.4889 16 7 -0.0172 -5.6372 -7.3980 17 14 -1.0746 -8.1216 -6.7771 18 1 -2.4445 -7.9086 -6.2447 19 1 -1.1477 -8.4018 -8.2336 20 1 -0.4471 -9.2741 -6.0821 21 6 3.4466 -6.0144 -3.6715 22 6 4.5906 -5.0614 -4.0233 23 6 5.4374 -5.3974 -5.2525 24 6 6.0199 -5.5786 -3.8486 25 6 2.0765 -2.8322 0.0808 26 6 1.5646 -2.0284 1.2790 27 8 2.0066 -0.6742 1.1663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 3.1298 -0.6874 -1.2710 32 1 1.6430 -0.2361 -2.1404 33 1 3.2331 -2.9733 -2.3378 34 1 1.8694 -2.4110 -3.3340 35 1 0.8555 -4.3352 -5.1044 36 1 2.2514 -5.1237 -5.8774 37 1 -0.5258 -5.7336 -8.2182 38 1 3.5716 -6.3704 -2.6489 39 1 3.4573 -6.8630 -4.3556 40 1 4.4072 -4.0080 -3.8113 41 1 5.1797 -6.2977 -5.8103 42 1 5.8113 -4.5653 -5.8490 43 1 6.7768 -4.8654 -3.5220 44 1 6.1452 -6.5977 -3.4826 45 1 1.7038 -3.8546 0.1419 46 1 3.1665 -2.8400 0.0863 47 1 1.9532 -2.4622 2.2003 48 1 0.4751 -2.0550 1.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365034205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:19 Heat of formation + Delta-G solvation = -103.921900 kcal Electronic energy + Delta-G solvation = -28293.024694 eV Core-core repulsion = 24475.671820 eV Total energy + Delta-G solvation = -3817.352874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.00843 -37.65762 -36.52731 -35.40366 -35.08878 -34.72598 -32.42828 -32.35433 -29.37074 -27.87737 -27.23236 -25.39921 -23.67595 -22.63796 -22.35273 -22.11059 -20.37406 -19.45144 -18.24025 -17.12437 -16.66445 -16.45993 -16.21138 -15.92829 -15.80896 -15.22649 -14.73753 -14.58150 -14.43387 -14.20407 -13.85642 -13.44492 -13.19431 -13.05021 -12.54716 -12.47522 -12.38606 -12.21231 -12.07008 -11.78683 -11.51521 -11.50204 -11.40074 -11.35019 -11.21173 -11.12927 -11.10002 -10.93613 -10.79654 -10.59215 -10.42263 -10.21519 -10.09391 -9.94236 -9.72779 -9.60952 -9.52235 -8.43125 -8.06142 -6.05440 -4.08397 0.80467 3.28331 3.33152 3.39017 3.43294 3.69391 4.02298 4.26449 4.37040 4.44634 4.48432 4.57018 4.74293 4.77970 4.91410 4.93216 5.12660 5.12880 5.15498 5.21121 5.24009 5.24971 5.30123 5.39843 5.44199 5.56007 5.57560 5.69162 5.73069 5.77537 5.79550 5.82482 5.90660 5.96061 6.03287 6.08294 6.14417 6.18552 6.31375 6.47793 6.57314 7.06387 7.21584 7.38368 7.59526 7.92392 8.22176 8.93841 9.56315 11.03313 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004101 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.224780 B = 6826.312818 C = 8062.066604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.085 3.915 3 H 0.103 0.897 4 C -0.136 4.136 5 C -0.077 4.077 6 H 0.085 0.915 7 C -0.638 4.638 8 S 2.602 3.398 9 O -0.938 6.938 10 O -0.971 6.971 11 N -0.981 5.981 12 C 0.257 3.743 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.150 3.850 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.179 4.179 26 C 0.059 3.941 27 O -0.378 6.378 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 9.533 11.697 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.027 3.973 3 H 0.121 0.879 4 C -0.175 4.175 5 C -0.097 4.097 6 H 0.104 0.896 7 C -0.765 4.765 8 S 2.694 3.306 9 O -0.928 6.928 10 O -0.961 6.961 11 N -0.818 5.818 12 C 0.135 3.865 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.024 3.976 22 C -0.193 4.193 23 C -0.209 4.209 24 C -0.220 4.220 25 C -0.216 4.216 26 C -0.018 4.018 27 O -0.297 6.297 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.645 9.251 12.209 17.120 hybrid contribution -0.290 -0.311 -1.050 1.133 sum 7.355 8.940 11.159 16.080 Atomic orbital electron populations 1.22511 0.96311 1.03207 1.02893 1.22201 0.93619 0.96345 0.85133 0.87930 1.22207 1.02064 0.94537 0.98662 1.20910 1.00666 0.95841 0.92234 0.89637 1.30944 1.12780 1.26518 1.06251 1.05228 0.75177 0.76566 0.73649 1.93634 1.29331 1.86340 1.83494 1.93494 1.81785 1.67255 1.53594 1.57400 1.32003 1.66628 1.25763 1.19069 0.91931 0.97694 0.77826 1.21468 1.27608 1.04079 1.03113 0.92153 1.24911 0.96499 0.96744 0.95842 1.69918 1.42065 1.33015 1.08675 0.86542 0.80905 0.83169 0.77103 1.20441 1.21199 1.19811 1.20808 0.80362 0.93917 1.02555 1.22970 0.92313 1.00418 1.03555 1.22995 1.03721 1.03494 0.90670 1.22941 0.95969 1.02375 1.00711 1.22682 1.03302 1.01054 0.94604 1.22578 0.99033 0.81965 0.98212 1.87966 1.73762 1.24846 1.43134 0.91575 0.91751 0.91161 0.90648 0.90362 0.85499 0.84997 0.94663 0.94395 0.92760 0.89648 0.89379 0.88341 0.88335 0.89260 0.89227 0.88702 0.88947 0.89923 0.88432 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.65 37.16 0.32 -1.46 16 2 C 0.08 0.84 3.91 -26.68 -0.10 0.74 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -1.42 4.93 -26.59 -0.13 -1.55 16 5 C -0.08 -0.96 1.96 -90.44 -0.18 -1.14 16 6 H 0.09 1.10 6.62 -51.93 -0.34 0.75 16 7 C -0.64 -8.68 5.60 37.15 0.21 -8.47 16 8 S 2.60 48.57 5.03 -107.50 -0.54 48.03 16 9 O -0.94 -21.69 16.98 -57.54 -0.98 -22.67 16 10 O -0.97 -18.64 14.37 -57.54 -0.83 -19.47 16 11 N -0.98 -19.58 2.70 -115.66 -0.31 -19.89 16 12 C 0.26 6.26 5.01 -5.20 -0.03 6.23 16 13 C -0.52 -14.54 9.38 -34.44 -0.32 -14.87 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 C 0.15 2.57 5.94 -4.04 -0.02 2.54 16 22 C -0.17 -2.44 6.01 -90.62 -0.54 -2.99 16 23 C -0.17 -2.28 10.18 -26.70 -0.27 -2.55 16 24 C -0.18 -2.14 10.25 -26.70 -0.27 -2.41 16 25 C -0.18 -2.20 5.02 -26.59 -0.13 -2.34 16 26 C 0.06 0.64 6.51 37.21 0.24 0.88 16 27 O -0.38 -4.40 10.60 -35.23 -0.37 -4.78 16 28 H 0.07 0.66 4.98 -51.93 -0.26 0.40 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.47 7.20 -51.92 -0.37 1.09 16 34 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.04 0.91 7.61 -51.93 -0.39 0.51 16 36 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.39 6.82 -51.93 -0.35 1.03 16 39 H 0.09 1.57 7.84 -51.93 -0.41 1.17 16 40 H 0.10 1.30 7.18 -51.92 -0.37 0.93 16 41 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.26 5.85 -51.93 -0.30 0.95 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -32.86 384.91 -11.02 -43.88 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.17 Total: 3.25 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -1.33 Total: -25.73 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.42 Total: -45.08 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.18 Total: -46.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -0.54 Total: 48.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.86 -11.02 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.040 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds