Wall clock time and date at job start Tue Mar 31 2020 17:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.48749 * 2 1 4 4 C 1.53095 * 109.47936 * 239.97444 * 2 1 3 5 5 C 1.53178 * 109.16356 * 297.62319 * 4 2 1 6 6 H 1.09005 * 109.54484 * 62.97708 * 5 4 2 7 7 C 1.52992 * 109.54487 * 183.15623 * 5 4 2 8 8 S 1.81403 * 109.47317 * 185.00044 * 7 5 4 9 9 O 1.42105 * 110.54404 * 68.37227 * 8 7 5 10 10 O 1.42101 * 110.53994 * 291.62606 * 8 7 5 11 11 N 1.65591 * 104.45164 * 179.97438 * 8 7 5 12 12 C 1.46498 * 120.00456 * 269.99901 * 11 8 7 13 13 C 1.50695 * 109.47417 * 265.00195 * 12 11 8 14 14 H 1.08000 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99860 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00306 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46887 * 90.00019 * 17 15 13 19 19 H 1.48502 * 109.47322 * 209.99761 * 17 15 13 20 20 H 1.48503 * 109.47117 * 330.00055 * 17 15 13 21 21 C 1.46505 * 119.99950 * 90.00009 * 11 8 7 22 22 C 1.52997 * 109.47212 * 265.00044 * 21 11 8 23 23 C 1.52998 * 117.50310 * 243.74638 * 22 21 11 24 24 C 1.52996 * 117.50163 * 175.08612 * 22 21 11 25 25 C 1.53183 * 109.03733 * 303.02468 * 5 4 2 26 26 C 1.53094 * 109.16283 * 56.97548 * 25 5 4 27 27 O 1.42897 * 109.41682 * 302.39361 * 26 25 5 28 28 H 1.09003 * 109.47231 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47226 * 300.02700 * 1 2 3 30 30 H 1.08999 * 109.47357 * 60.03253 * 1 2 3 31 31 H 1.08997 * 109.52122 * 177.72158 * 4 2 1 32 32 H 1.08995 * 109.57533 * 57.55723 * 4 2 1 33 33 H 1.08999 * 109.47581 * 64.99861 * 7 5 4 34 34 H 1.08999 * 109.47185 * 304.99388 * 7 5 4 35 35 H 1.08999 * 109.46835 * 25.00228 * 12 11 8 36 36 H 1.09001 * 109.47298 * 144.99801 * 12 11 8 37 37 H 0.96998 * 119.99922 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47068 * 25.00104 * 21 11 8 39 39 H 1.09001 * 109.47372 * 145.00192 * 21 11 8 40 40 H 1.09008 * 115.55245 * 29.41332 * 22 21 11 41 41 H 1.09000 * 117.49561 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.50593 * 145.01245 * 23 22 21 43 43 H 1.09004 * 117.49898 * 214.97822 * 24 22 21 44 44 H 1.09005 * 117.49813 * 359.97438 * 24 22 21 45 45 H 1.08993 * 109.52259 * 176.88782 * 25 5 4 46 46 H 1.09006 * 109.51754 * 297.07465 * 25 5 4 47 47 H 1.08998 * 109.47587 * 182.41259 * 26 25 5 48 48 H 1.08997 * 109.48759 * 62.38457 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5758 -2.1813 -1.2123 6 1 0.4868 -2.2180 -1.2425 7 6 2.1468 -2.9314 -2.4172 8 16 1.4776 -4.6171 -2.4528 9 8 0.0879 -4.5958 -2.7487 10 8 1.9833 -5.3773 -1.3640 11 7 2.1686 -5.3079 -3.7898 12 6 1.5021 -5.2126 -5.0909 13 6 0.6743 -6.4502 -5.3232 14 1 0.6477 -7.2300 -4.5764 15 6 -0.0491 -6.5871 -6.4889 16 7 -0.0172 -5.6372 -7.3980 17 14 -1.0746 -8.1216 -6.7771 18 1 -2.4445 -7.9086 -6.2447 19 1 -1.1477 -8.4018 -8.2336 20 1 -0.4471 -9.2741 -6.0821 21 6 3.4466 -6.0144 -3.6715 22 6 4.5906 -5.0614 -4.0233 23 6 5.4374 -5.3974 -5.2525 24 6 6.0199 -5.5786 -3.8486 25 6 2.0765 -2.8322 0.0808 26 6 1.5646 -2.0284 1.2790 27 8 2.0066 -0.6742 1.1663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 3.1298 -0.6874 -1.2710 32 1 1.6430 -0.2361 -2.1404 33 1 3.2331 -2.9733 -2.3378 34 1 1.8694 -2.4110 -3.3340 35 1 0.8555 -4.3352 -5.1044 36 1 2.2514 -5.1237 -5.8774 37 1 -0.5258 -5.7336 -8.2182 38 1 3.5716 -6.3704 -2.6489 39 1 3.4573 -6.8630 -4.3556 40 1 4.4072 -4.0080 -3.8113 41 1 5.1797 -6.2977 -5.8103 42 1 5.8113 -4.5653 -5.8490 43 1 6.7768 -4.8654 -3.5220 44 1 6.1452 -6.5977 -3.4826 45 1 1.7038 -3.8546 0.1419 46 1 3.1665 -2.8400 0.0863 47 1 1.9532 -2.4622 2.2003 48 1 0.4751 -2.0550 1.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365034205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:18 Heat of formation + Delta-G solvation = -125.021013 kcal Electronic energy + Delta-G solvation = -28293.939620 eV Core-core repulsion = 24475.671820 eV Total energy + Delta-G solvation = -3818.267800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.86129 -38.87697 -38.10376 -36.95168 -36.38090 -36.01405 -34.38164 -33.21414 -30.34722 -29.67883 -28.11714 -27.04411 -24.62566 -24.26331 -23.46437 -23.13320 -21.52887 -20.32463 -19.75886 -18.72381 -18.40458 -17.58954 -17.49119 -17.24458 -16.91164 -16.47783 -16.24380 -15.79584 -15.52273 -15.41697 -14.92337 -14.73381 -14.40005 -14.25071 -14.16969 -13.78469 -13.55862 -13.32802 -13.17651 -13.17461 -13.06997 -12.94777 -12.71964 -12.63992 -12.56164 -12.38526 -12.27581 -12.24314 -12.16880 -12.04687 -11.98878 -11.74642 -11.40141 -11.19980 -10.95276 -10.74127 -10.58575 -10.46021 -9.71761 -8.19840 -6.30206 -0.64789 1.36912 1.39701 1.48581 1.79173 2.40532 2.86731 2.95300 3.01392 3.10947 3.20671 3.38749 3.55411 3.65198 3.79577 3.95235 4.00817 4.11409 4.13961 4.18101 4.26157 4.29823 4.35206 4.40552 4.47537 4.52615 4.63978 4.67642 4.75731 4.85840 4.90781 4.92162 4.95286 4.97368 5.08239 5.11363 5.11980 5.20201 5.22458 5.33474 5.35002 5.35907 5.50744 5.70979 5.94303 6.13891 6.26099 6.77138 7.37726 8.87564 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004101 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.224780 B = 6826.312818 C = 8062.066604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.081 3.919 3 H 0.124 0.876 4 C -0.132 4.132 5 C -0.084 4.084 6 H 0.078 0.922 7 C -0.604 4.604 8 S 2.594 3.406 9 O -0.994 6.994 10 O -0.984 6.984 11 N -0.989 5.989 12 C 0.274 3.726 13 C -0.544 4.544 14 H 0.046 0.954 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.951 3.049 18 H -0.279 1.279 19 H -0.272 1.272 20 H -0.268 1.268 21 C 0.147 3.853 22 C -0.189 4.189 23 C -0.182 4.182 24 C -0.156 4.156 25 C -0.182 4.182 26 C 0.058 3.942 27 O -0.388 6.388 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.017 0.983 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 11.017 12.402 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.024 3.976 3 H 0.142 0.858 4 C -0.171 4.171 5 C -0.105 4.105 6 H 0.096 0.904 7 C -0.736 4.736 8 S 2.692 3.308 9 O -0.985 6.985 10 O -0.974 6.974 11 N -0.826 5.826 12 C 0.150 3.850 13 C -0.584 4.584 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.563 5.563 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.197 1.197 20 H -0.193 1.193 21 C 0.021 3.979 22 C -0.208 4.208 23 C -0.219 4.219 24 C -0.194 4.194 25 C -0.219 4.219 26 C -0.019 4.019 27 O -0.307 6.307 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.129 0.871 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.276 10.661 12.916 19.145 hybrid contribution -0.769 -0.718 -1.190 1.588 sum 8.507 9.944 11.726 17.571 Atomic orbital electron populations 1.22533 0.96183 1.02629 1.03748 1.22383 0.93835 0.97098 0.84331 0.85848 1.22226 1.02747 0.92505 0.99594 1.21056 1.00394 0.97444 0.91564 0.90416 1.30615 1.14238 1.20932 1.07854 1.05214 0.74165 0.78550 0.72878 1.93563 1.33036 1.87876 1.84031 1.93469 1.81434 1.69163 1.53373 1.57239 1.32810 1.68401 1.24106 1.18569 0.91163 0.95508 0.79717 1.21806 1.28466 1.05080 1.03003 0.93546 1.25668 0.97564 0.99578 0.95710 1.69994 1.42795 1.34469 1.09063 0.85674 0.79106 0.79992 0.77669 1.20516 1.19726 1.19262 1.20903 0.80410 0.94212 1.02394 1.22876 0.92462 1.00429 1.05070 1.23039 1.04073 1.03415 0.91341 1.23061 0.94409 1.03228 0.98687 1.22702 1.03805 1.00238 0.95202 1.22628 0.99298 0.81810 0.98160 1.87958 1.74000 1.24869 1.43887 0.92862 0.91113 0.90177 0.89607 0.89083 0.82400 0.83624 0.96504 0.95161 0.92428 0.89142 0.91296 0.86966 0.89818 0.88051 0.86662 0.88147 0.90824 0.89045 0.87057 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 8.65 71.98 0.62 -2.61 16 2 C 0.08 1.38 3.91 30.63 0.12 1.50 16 3 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.13 -2.33 4.93 30.69 0.15 -2.18 16 5 C -0.08 -1.97 1.96 -10.68 -0.02 -1.99 16 6 H 0.08 1.95 6.62 -2.38 -0.02 1.94 16 7 C -0.60 -15.32 5.60 71.98 0.40 -14.92 16 8 S 2.59 98.37 5.03 -56.49 -0.28 98.08 16 9 O -0.99 -48.04 16.98 -127.65 -2.17 -50.21 16 10 O -0.98 -38.29 14.37 -127.65 -1.83 -40.13 16 11 N -0.99 -40.41 2.70 -519.85 -1.40 -41.81 16 12 C 0.27 13.83 5.01 85.63 0.43 14.26 16 13 C -0.54 -31.30 9.38 25.60 0.24 -31.06 16 14 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 15 C 0.01 0.81 5.46 84.65 0.46 1.27 16 16 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 17 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.15 5.05 5.94 86.38 0.51 5.57 16 22 C -0.19 -5.05 6.01 -10.80 -0.06 -5.12 16 23 C -0.18 -4.58 10.18 30.62 0.31 -4.27 16 24 C -0.16 -3.25 10.25 30.62 0.31 -2.94 16 25 C -0.18 -4.21 5.02 30.69 0.15 -4.05 16 26 C 0.06 1.16 6.51 72.01 0.47 1.63 16 27 O -0.39 -8.07 10.60 -148.98 -1.58 -9.65 16 28 H 0.05 1.02 4.98 -2.39 -0.01 1.01 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.16 3.10 7.20 -2.39 -0.02 3.09 16 34 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 36 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 37 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.09 2.96 6.82 -2.39 -0.02 2.95 16 39 H 0.07 2.57 7.84 -2.39 -0.02 2.55 16 40 H 0.11 2.67 7.18 -2.38 -0.02 2.65 16 41 H 0.08 2.34 8.03 -2.39 -0.02 2.32 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.07 1.99 5.85 -2.39 -0.01 1.97 16 46 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.06 1.14 6.34 -2.39 -0.02 1.12 16 Total: -1.00 -72.70 384.91 0.08 -72.63 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.93 Total: 22.63 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 4.10 Total: -44.90 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -1.12 Total: -95.75 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -5.58 Total: -99.99 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 98.37 SS G_CDS: -0.28 Total: 98.08 kcal Total: -72.70 0.08 -72.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.395 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds