Wall clock time and date at job start Tue Mar 31 2020 17:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48504 * 2 1 4 4 C 1.53089 * 109.47926 * 239.97120 * 2 1 3 5 5 C 1.53182 * 109.15859 * 182.40738 * 4 2 1 6 6 H 1.08993 * 109.54707 * 297.02240 * 5 4 2 7 7 C 1.53001 * 109.54233 * 176.84562 * 5 4 2 8 8 S 1.81397 * 109.47267 * 175.00127 * 7 5 4 9 9 O 1.42098 * 110.54172 * 68.37462 * 8 7 5 10 10 O 1.42097 * 110.54166 * 291.62250 * 8 7 5 11 11 N 1.65605 * 104.45020 * 179.97438 * 8 7 5 12 12 C 1.46502 * 119.99873 * 269.99839 * 11 8 7 13 13 C 1.50697 * 109.47079 * 265.00173 * 12 11 8 14 14 H 1.08000 * 119.99936 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99754 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99983 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47264 * 59.99488 * 17 15 13 19 19 H 1.48496 * 109.47266 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 299.99816 * 17 15 13 21 21 C 1.46499 * 119.99782 * 89.99811 * 11 8 7 22 22 C 1.53000 * 109.46840 * 95.00317 * 21 11 8 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.53184 * 109.03579 * 56.98368 * 5 4 2 26 26 C 1.53093 * 109.15789 * 303.01177 * 25 5 4 27 27 O 1.42904 * 109.41575 * 57.61822 * 26 25 5 28 28 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47284 * 300.03013 * 1 2 3 30 30 H 1.09000 * 109.47357 * 60.03429 * 1 2 3 31 31 H 1.08993 * 109.52608 * 62.50498 * 4 2 1 32 32 H 1.09002 * 109.57391 * 302.34040 * 4 2 1 33 33 H 1.08996 * 109.47095 * 54.99728 * 7 5 4 34 34 H 1.09007 * 109.47050 * 295.00285 * 7 5 4 35 35 H 1.08998 * 109.47222 * 25.00345 * 12 11 8 36 36 H 1.09000 * 109.46517 * 144.99933 * 12 11 8 37 37 H 0.97003 * 120.00108 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47391 * 334.99987 * 21 11 8 39 39 H 1.09001 * 109.46813 * 215.00043 * 21 11 8 40 40 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 41 41 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 43 43 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 44 44 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 45 45 H 1.08996 * 109.52376 * 62.92132 * 25 5 4 46 46 H 1.09005 * 109.51938 * 183.11390 * 25 5 4 47 47 H 1.08998 * 109.48693 * 297.62965 * 26 25 5 48 48 H 1.09003 * 109.48755 * 177.59625 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7708 -1.2121 6 1 3.9690 0.2435 -1.2423 7 6 4.0878 -1.5594 -2.4171 8 16 5.9001 -1.4909 -2.4526 9 8 6.4481 -2.2212 -1.3637 10 8 6.3436 -0.1738 -2.7485 11 7 6.3209 -2.3741 -3.7888 12 6 6.5607 -3.8144 -3.6692 13 6 8.0351 -4.0645 -3.4837 14 1 8.7247 -3.2337 -3.4579 15 6 8.5038 -5.3540 -3.3479 16 7 7.6641 -6.3657 -3.3798 17 14 10.3316 -5.6641 -3.1187 18 1 10.7988 -4.9808 -1.8857 19 1 10.5746 -7.1240 -2.9973 20 1 11.0744 -5.1339 -4.2902 21 6 6.4534 -1.7150 -5.0904 22 6 7.9184 -1.3422 -5.3265 23 6 8.2588 0.1449 -5.4437 24 6 8.2853 -0.7464 -6.6871 25 6 4.0176 -1.4601 0.0810 26 6 3.4307 -0.7092 1.2791 27 8 2.0065 -0.6741 1.1665 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 1.7149 -0.1844 -2.1398 32 1 1.6443 -1.7375 -1.2720 33 1 3.6897 -1.1244 -3.3338 34 1 3.7649 -2.5975 -2.3375 35 1 6.0152 -4.2034 -2.8095 36 1 6.2180 -4.3160 -4.5742 37 1 7.9939 -7.2729 -3.2847 38 1 5.8420 -0.8127 -5.1048 39 1 6.1198 -2.3925 -5.8764 40 1 8.6517 -1.9903 -4.8466 41 1 7.4392 0.8577 -5.3523 42 1 9.2162 0.4753 -5.0409 43 1 9.2602 -1.0023 -7.1022 44 1 7.4832 -0.6204 -7.4142 45 1 3.6613 -2.4901 0.0865 46 1 5.1059 -1.4497 0.1422 47 1 3.8192 0.3091 1.2959 48 1 3.7099 -1.2200 2.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365034214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:23 Heat of formation + Delta-G solvation = -104.855236 kcal Electronic energy + Delta-G solvation = -28109.944941 eV Core-core repulsion = 24292.551595 eV Total energy + Delta-G solvation = -3817.393347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.70864 -37.48462 -36.46932 -35.38127 -35.02664 -34.69786 -32.93897 -32.35875 -29.08681 -27.78534 -27.16250 -25.49281 -23.58193 -22.40509 -21.92634 -21.79339 -20.35166 -20.18293 -18.20756 -17.12753 -16.65359 -16.43385 -16.01340 -15.94480 -15.53712 -15.05797 -14.76161 -14.63049 -14.33469 -14.07187 -13.79772 -13.46279 -13.10657 -12.70758 -12.54498 -12.49984 -12.37672 -12.31593 -12.02733 -11.78209 -11.54114 -11.45656 -11.29345 -11.26203 -11.14500 -11.10674 -11.06002 -10.98673 -10.76433 -10.55016 -10.47727 -10.17236 -10.08475 -9.81998 -9.58288 -9.47950 -9.34278 -8.41877 -8.06932 -6.04693 -4.07020 0.80410 3.30725 3.34570 3.38062 3.43311 3.62930 4.24114 4.31268 4.37905 4.45108 4.54483 4.57434 4.72668 4.81636 4.99793 5.05772 5.19008 5.21766 5.24810 5.27820 5.34319 5.35282 5.38782 5.45705 5.49821 5.58036 5.61800 5.68162 5.71543 5.83233 5.84296 5.94875 5.97069 6.00192 6.06682 6.16635 6.21759 6.31518 6.48482 6.54678 6.94660 7.10819 7.19751 7.38883 7.58616 7.93838 8.22615 8.94057 9.57201 11.04195 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003929 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.051412 B = 7125.350440 C = 8392.674828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.137 4.137 5 C -0.075 4.075 6 H 0.081 0.919 7 C -0.640 4.640 8 S 2.602 3.398 9 O -0.934 6.934 10 O -0.967 6.967 11 N -0.984 5.984 12 C 0.256 3.744 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.062 3.938 16 N -0.898 5.898 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.168 3.832 22 C -0.160 4.160 23 C -0.176 4.176 24 C -0.186 4.186 25 C -0.182 4.182 26 C 0.065 3.935 27 O -0.381 6.381 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.052 0.948 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 12.619 0.918 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.076 0.924 4 C -0.175 4.175 5 C -0.094 4.094 6 H 0.099 0.901 7 C -0.766 4.766 8 S 2.693 3.307 9 O -0.924 6.924 10 O -0.957 6.957 11 N -0.822 5.822 12 C 0.135 3.865 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.041 3.959 22 C -0.180 4.180 23 C -0.213 4.213 24 C -0.224 4.224 25 C -0.220 4.220 26 C -0.012 4.012 27 O -0.300 6.300 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.070 0.930 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.411 12.725 1.646 17.171 hybrid contribution 0.667 -0.535 -0.524 1.003 sum -10.744 12.190 1.122 16.287 Atomic orbital electron populations 1.21762 0.93057 1.03022 1.02321 1.22124 0.95074 0.95063 0.85245 0.92375 1.22256 0.94297 1.02519 0.98474 1.20870 0.97241 0.98801 0.92538 0.90066 1.30917 1.30467 1.09555 1.05671 1.05280 0.76935 0.73938 0.74505 1.93617 1.74384 1.71975 1.52451 1.93535 1.78783 1.38966 1.84442 1.57474 1.82016 1.21264 1.21477 1.19090 0.97212 0.72379 0.97868 1.21436 0.92612 0.92328 1.49505 0.91942 1.24906 0.97949 0.96006 0.95121 1.69899 1.34376 0.98982 1.50455 0.86635 0.85359 0.77031 0.78909 1.20034 1.21239 1.20228 1.20581 0.93851 0.95709 0.85715 1.23047 0.99504 0.96070 0.99346 1.22938 1.02799 0.94121 1.01471 1.22895 1.02432 1.05727 0.91343 1.22717 1.03387 1.01530 0.94338 1.22561 0.80562 0.99597 0.98478 1.87921 1.21273 1.77999 1.42801 0.91715 0.91863 0.91127 0.90633 0.90413 0.85671 0.84979 0.94468 0.94702 0.92717 0.91907 0.90553 0.85579 0.88956 0.89563 0.89311 0.89389 0.89572 0.88694 0.93021 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.56 37.16 0.36 -0.83 16 2 C 0.08 0.85 3.26 -26.69 -0.09 0.76 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -1.44 4.71 -26.59 -0.13 -1.56 16 5 C -0.07 -0.94 2.27 -90.43 -0.21 -1.14 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.64 -8.61 5.62 37.16 0.21 -8.41 16 8 S 2.60 47.88 4.98 -107.50 -0.54 47.34 16 9 O -0.93 -20.79 14.82 -57.54 -0.85 -21.64 16 10 O -0.97 -18.77 16.99 -57.54 -0.98 -19.74 16 11 N -0.98 -19.41 2.73 -115.66 -0.32 -19.72 16 12 C 0.26 6.15 5.03 -5.19 -0.03 6.12 16 13 C -0.52 -14.11 8.70 -34.44 -0.30 -14.41 16 14 H 0.06 1.70 6.16 -52.49 -0.32 1.38 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.17 2.87 5.56 -4.04 -0.02 2.84 16 22 C -0.16 -2.87 5.90 -90.62 -0.53 -3.40 16 23 C -0.18 -2.78 10.18 -26.73 -0.27 -3.05 16 24 C -0.19 -2.71 10.25 -26.73 -0.27 -2.98 16 25 C -0.18 -2.46 5.02 -26.59 -0.13 -2.59 16 26 C 0.06 0.75 6.84 37.21 0.25 1.01 16 27 O -0.38 -4.69 10.41 -35.23 -0.37 -5.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.04 0.94 7.61 -51.93 -0.39 0.55 16 36 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 39 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 40 H 0.13 2.66 5.77 -51.93 -0.30 2.36 16 41 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.43 5.85 -51.93 -0.30 1.12 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -32.43 389.63 -11.15 -43.57 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.43 Total: 3.79 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -1.26 Total: -26.02 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.42 Total: -44.77 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -2.20 Total: -46.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.54 Total: 47.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.43 -11.15 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.281 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds