Wall clock time and date at job start Tue Mar 31 2020 17:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48504 * 2 1 4 4 C 1.53089 * 109.47926 * 239.97120 * 2 1 3 5 5 C 1.53182 * 109.15859 * 182.40738 * 4 2 1 6 6 H 1.08993 * 109.54707 * 297.02240 * 5 4 2 7 7 C 1.53001 * 109.54233 * 176.84562 * 5 4 2 8 8 S 1.81397 * 109.47267 * 175.00127 * 7 5 4 9 9 O 1.42098 * 110.54172 * 68.37462 * 8 7 5 10 10 O 1.42097 * 110.54166 * 291.62250 * 8 7 5 11 11 N 1.65605 * 104.45020 * 179.97438 * 8 7 5 12 12 C 1.46502 * 119.99873 * 269.99839 * 11 8 7 13 13 C 1.50697 * 109.47079 * 265.00173 * 12 11 8 14 14 H 1.08000 * 119.99936 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99754 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99983 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47264 * 59.99488 * 17 15 13 19 19 H 1.48496 * 109.47266 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 299.99816 * 17 15 13 21 21 C 1.46499 * 119.99782 * 89.99811 * 11 8 7 22 22 C 1.53000 * 109.46840 * 95.00317 * 21 11 8 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.53184 * 109.03579 * 56.98368 * 5 4 2 26 26 C 1.53093 * 109.15789 * 303.01177 * 25 5 4 27 27 O 1.42904 * 109.41575 * 57.61822 * 26 25 5 28 28 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47284 * 300.03013 * 1 2 3 30 30 H 1.09000 * 109.47357 * 60.03429 * 1 2 3 31 31 H 1.08993 * 109.52608 * 62.50498 * 4 2 1 32 32 H 1.09002 * 109.57391 * 302.34040 * 4 2 1 33 33 H 1.08996 * 109.47095 * 54.99728 * 7 5 4 34 34 H 1.09007 * 109.47050 * 295.00285 * 7 5 4 35 35 H 1.08998 * 109.47222 * 25.00345 * 12 11 8 36 36 H 1.09000 * 109.46517 * 144.99933 * 12 11 8 37 37 H 0.97003 * 120.00108 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47391 * 334.99987 * 21 11 8 39 39 H 1.09001 * 109.46813 * 215.00043 * 21 11 8 40 40 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 41 41 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 43 43 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 44 44 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 45 45 H 1.08996 * 109.52376 * 62.92132 * 25 5 4 46 46 H 1.09005 * 109.51938 * 183.11390 * 25 5 4 47 47 H 1.08998 * 109.48693 * 297.62965 * 26 25 5 48 48 H 1.09003 * 109.48755 * 177.59625 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7708 -1.2121 6 1 3.9690 0.2435 -1.2423 7 6 4.0878 -1.5594 -2.4171 8 16 5.9001 -1.4909 -2.4526 9 8 6.4481 -2.2212 -1.3637 10 8 6.3436 -0.1738 -2.7485 11 7 6.3209 -2.3741 -3.7888 12 6 6.5607 -3.8144 -3.6692 13 6 8.0351 -4.0645 -3.4837 14 1 8.7247 -3.2337 -3.4579 15 6 8.5038 -5.3540 -3.3479 16 7 7.6641 -6.3657 -3.3798 17 14 10.3316 -5.6641 -3.1187 18 1 10.7988 -4.9808 -1.8857 19 1 10.5746 -7.1240 -2.9973 20 1 11.0744 -5.1339 -4.2902 21 6 6.4534 -1.7150 -5.0904 22 6 7.9184 -1.3422 -5.3265 23 6 8.2588 0.1449 -5.4437 24 6 8.2853 -0.7464 -6.6871 25 6 4.0176 -1.4601 0.0810 26 6 3.4307 -0.7092 1.2791 27 8 2.0065 -0.6741 1.1665 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 1.7149 -0.1844 -2.1398 32 1 1.6443 -1.7375 -1.2720 33 1 3.6897 -1.1244 -3.3338 34 1 3.7649 -2.5975 -2.3375 35 1 6.0152 -4.2034 -2.8095 36 1 6.2180 -4.3160 -4.5742 37 1 7.9939 -7.2729 -3.2847 38 1 5.8420 -0.8127 -5.1048 39 1 6.1198 -2.3925 -5.8764 40 1 8.6517 -1.9903 -4.8466 41 1 7.4392 0.8577 -5.3523 42 1 9.2162 0.4753 -5.0409 43 1 9.2602 -1.0023 -7.1022 44 1 7.4832 -0.6204 -7.4142 45 1 3.6613 -2.4901 0.0865 46 1 5.1059 -1.4497 0.1422 47 1 3.8192 0.3091 1.2959 48 1 3.7099 -1.2200 2.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365034214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:22 Heat of formation + Delta-G solvation = -125.649984 kcal Electronic energy + Delta-G solvation = -28110.846669 eV Core-core repulsion = 24292.551595 eV Total energy + Delta-G solvation = -3818.295074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.59994 -38.84663 -38.01878 -36.85574 -36.33630 -36.03660 -34.36025 -33.72057 -30.12309 -29.58387 -27.99286 -27.10477 -24.64628 -24.15433 -23.08758 -22.72528 -21.56707 -21.27686 -19.68946 -18.60640 -18.56641 -17.44946 -17.34226 -17.07689 -16.87409 -16.46116 -16.10794 -15.85206 -15.50504 -15.25665 -15.03512 -14.94315 -14.37560 -14.15419 -13.89936 -13.55659 -13.48371 -13.33304 -13.21129 -13.13026 -13.00961 -12.88741 -12.81819 -12.73162 -12.56981 -12.39554 -12.26591 -12.25637 -12.13909 -12.00958 -11.93747 -11.53091 -11.40398 -11.17353 -11.12679 -10.64716 -10.54980 -10.46037 -9.69782 -8.16962 -6.24951 -0.61430 1.36870 1.39995 1.46616 1.84740 2.41654 2.81316 3.01042 3.04168 3.14817 3.24741 3.38544 3.54882 3.68337 3.93089 3.94755 4.00791 4.13049 4.16943 4.17211 4.24725 4.33198 4.39095 4.45651 4.51878 4.53952 4.66229 4.73721 4.75333 4.84176 4.85713 4.88285 5.01340 5.03934 5.04645 5.08575 5.11762 5.22623 5.27223 5.33994 5.35101 5.43154 5.62028 5.74899 5.98975 6.17855 6.27504 6.81881 7.41831 8.90563 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003929 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.051412 B = 7125.350440 C = 8392.674828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.069 0.931 4 C -0.132 4.132 5 C -0.081 4.081 6 H 0.091 0.909 7 C -0.608 4.608 8 S 2.594 3.406 9 O -0.987 6.987 10 O -0.982 6.982 11 N -0.991 5.991 12 C 0.271 3.729 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.945 3.055 18 H -0.281 1.281 19 H -0.277 1.277 20 H -0.267 1.267 21 C 0.161 3.839 22 C -0.196 4.196 23 C -0.175 4.175 24 C -0.159 4.159 25 C -0.189 4.189 26 C 0.065 3.935 27 O -0.396 6.396 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.139 0.861 35 H 0.018 0.982 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 14.423 -0.394 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.171 4.171 5 C -0.101 4.101 6 H 0.109 0.891 7 C -0.740 4.740 8 S 2.692 3.308 9 O -0.977 6.977 10 O -0.972 6.972 11 N -0.828 5.828 12 C 0.148 3.852 13 C -0.570 4.570 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.202 1.202 20 H -0.192 1.192 21 C 0.036 3.964 22 C -0.216 4.216 23 C -0.212 4.212 24 C -0.197 4.197 25 C -0.227 4.227 26 C -0.011 4.011 27 O -0.315 6.315 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.123 14.546 0.311 19.593 hybrid contribution 1.156 -1.009 -0.087 1.537 sum -11.967 13.537 0.224 18.069 Atomic orbital electron populations 1.21781 0.91479 1.03060 1.03553 1.22387 0.96355 0.95342 0.84324 0.91272 1.22270 0.91976 1.02942 0.99887 1.21025 0.99145 0.98816 0.91079 0.89052 1.30605 1.24086 1.10916 1.08358 1.05261 0.79198 0.73088 0.73265 1.93557 1.77239 1.72781 1.54152 1.93503 1.80567 1.38933 1.84246 1.57323 1.83193 1.19346 1.22906 1.18622 0.95085 0.75007 0.96522 1.21782 0.94370 0.92108 1.48725 0.93054 1.25626 1.01719 0.96045 0.95215 1.69982 1.35853 0.99219 1.51558 0.85808 0.81135 0.77239 0.78732 1.20649 1.20227 1.19158 1.20845 0.93894 0.96939 0.84719 1.22941 0.99226 0.96946 1.02479 1.22997 1.02973 0.92993 1.02218 1.23004 1.03490 1.02750 0.90450 1.22741 1.02067 1.01604 0.96272 1.22577 0.80591 1.00118 0.97863 1.87914 1.21183 1.78480 1.43969 0.92269 0.91663 0.88919 0.87919 0.90746 0.81793 0.84298 0.96373 0.95302 0.92609 0.88788 0.89485 0.89749 0.87795 0.90002 0.88846 0.86588 0.90600 0.90960 0.91717 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.56 71.98 0.69 -1.21 16 2 C 0.07 1.30 3.26 30.62 0.10 1.40 16 3 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.13 -2.34 4.71 30.68 0.14 -2.19 16 5 C -0.08 -1.85 2.27 -10.67 -0.02 -1.87 16 6 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 7 C -0.61 -15.03 5.62 71.98 0.40 -14.63 16 8 S 2.59 95.71 4.98 -56.49 -0.28 95.43 16 9 O -0.99 -46.02 14.82 -127.65 -1.89 -47.91 16 10 O -0.98 -37.60 16.99 -127.65 -2.17 -39.77 16 11 N -0.99 -39.35 2.73 -519.85 -1.42 -40.77 16 12 C 0.27 13.42 5.03 85.63 0.43 13.85 16 13 C -0.53 -29.87 8.70 25.60 0.22 -29.65 16 14 H 0.05 2.94 6.16 -2.91 -0.02 2.93 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 17 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.16 5.33 5.56 86.38 0.48 5.81 16 22 C -0.20 -6.98 5.90 -10.79 -0.06 -7.04 16 23 C -0.17 -5.29 10.18 30.60 0.31 -4.98 16 24 C -0.16 -4.31 10.25 30.60 0.31 -3.99 16 25 C -0.19 -5.08 5.02 30.69 0.15 -4.92 16 26 C 0.07 1.47 6.84 72.01 0.49 1.96 16 27 O -0.40 -9.14 10.41 -148.98 -1.55 -10.69 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.16 2.85 8.14 -2.39 -0.02 2.84 16 34 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.02 0.96 7.61 -2.39 -0.02 0.95 16 36 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.09 2.46 7.34 -2.39 -0.02 2.45 16 39 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 40 H 0.08 3.72 5.77 -2.39 -0.01 3.71 16 41 H 0.10 2.88 8.03 -2.39 -0.02 2.86 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 46 H 0.07 2.27 5.85 -2.38 -0.01 2.26 16 47 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.86 389.63 0.04 -72.82 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.92 Total: 23.83 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 4.12 Total: -46.28 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.13 Total: -94.84 kcal Atomic # 8 Polarization: -92.76 SS G_CDS: -5.61 Total: -98.37 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 95.71 SS G_CDS: -0.28 Total: 95.43 kcal Total: -72.86 0.04 -72.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365034214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.832 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds