Wall clock time and date at job start Tue Mar 31 2020 17:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.01359 * 2 1 4 4 C 1.50975 * 109.95614 * 121.24548 * 2 1 3 5 5 N 1.29731 * 128.66996 * 288.73896 * 4 2 1 6 6 N 1.28925 * 109.42251 * 179.23056 * 5 4 2 7 7 C 1.30826 * 109.74307 * 0.54971 * 6 5 4 8 8 N 1.34795 * 107.11712 * 359.68251 * 7 6 5 9 9 C 1.46220 * 128.60549 * 179.74876 * 8 7 6 10 10 C 1.53328 * 109.17973 * 161.73267 * 9 8 7 11 11 N 1.47078 * 109.24615 * 45.65050 * 10 9 8 12 12 C 1.34772 * 120.94605 * 116.43684 * 11 10 9 13 13 O 1.21588 * 120.00071 * 354.79390 * 12 11 10 14 14 N 1.34776 * 120.00158 * 174.79780 * 12 11 10 15 15 C 1.40196 * 120.00173 * 185.12123 * 14 12 11 16 16 C 1.40400 * 125.97203 * 359.97438 * 15 14 12 17 17 C 1.35246 * 107.86957 * 180.02562 * 16 15 14 18 18 N 1.34962 * 107.85754 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.97557 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47274 * 125.00107 * 19 18 17 21 21 H 1.07995 * 119.99896 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00258 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47311 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47255 * 119.99992 * 24 22 20 27 27 H 1.48509 * 109.46782 * 239.99931 * 24 22 20 28 28 N 1.31214 * 125.97454 * 179.69033 * 15 14 12 29 29 H 1.09002 * 109.47617 * 181.24677 * 1 2 3 30 30 H 1.08997 * 109.47296 * 301.24935 * 1 2 3 31 31 H 1.09003 * 109.47505 * 61.24373 * 1 2 3 32 32 H 1.07996 * 126.44061 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.51999 * 281.64497 * 9 8 7 34 34 H 1.09004 * 109.51899 * 41.81941 * 9 8 7 35 35 H 1.09002 * 109.51088 * 165.58119 * 10 9 8 36 36 H 1.09004 * 109.50797 * 285.72004 * 10 9 8 37 37 H 0.97000 * 120.00133 * 5.11371 * 14 12 11 38 38 H 1.08003 * 126.06470 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.07302 * 180.02562 * 17 16 15 40 40 H 1.09003 * 109.47221 * 244.99587 * 19 18 17 41 41 H 1.08996 * 109.47544 * 4.99987 * 19 18 17 42 42 H 0.96993 * 119.99910 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0453 -0.7361 1.2133 5 7 2.0161 -0.3688 2.4572 6 7 2.5452 -1.2893 3.1885 7 6 2.9448 -2.2794 2.4323 8 7 2.6390 -1.9554 1.1601 9 6 2.8815 -2.7232 -0.0604 10 6 1.9793 -2.1890 -1.1792 11 7 2.0335 -0.7193 -1.1856 12 6 2.5294 -0.0486 -2.2442 13 8 3.0266 -0.6581 -3.1714 14 7 2.4742 1.2976 -2.2751 15 6 2.8911 1.9902 -3.4205 16 6 3.3856 1.4111 -4.6001 17 6 3.6762 2.4110 -5.4631 18 7 3.3793 3.5799 -4.8573 19 6 3.5412 4.9153 -5.4375 20 6 2.2281 5.6522 -5.3762 21 1 1.3599 5.1738 -4.9476 22 6 2.1353 6.9376 -5.8665 23 7 3.1929 7.5207 -6.3872 24 14 0.5078 7.8512 -5.7898 25 1 -0.5191 6.9814 -5.1621 26 1 0.6713 9.0868 -4.9824 27 1 0.0773 8.2116 -7.1647 28 7 2.8825 3.2926 -3.5796 29 1 -0.3634 -1.0274 0.0224 30 1 -0.3634 0.5331 0.8785 31 1 -0.3634 0.4944 -0.9009 32 1 3.4247 -3.1877 2.7653 33 1 3.9260 -2.6198 -0.3542 34 1 2.6552 -3.7742 0.1195 35 1 2.3260 -2.5702 -2.1397 36 1 0.9535 -2.5148 -1.0063 37 1 2.1460 1.7874 -1.5048 38 1 3.5115 0.3546 -4.7854 39 1 4.0751 2.2948 -6.4600 40 1 4.2940 5.4672 -4.8747 41 1 3.8585 4.8242 -6.4763 42 1 3.1277 8.4251 -6.7317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365486282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:14 Heat of formation + Delta-G solvation = 161.634759 kcal Electronic energy + Delta-G solvation = -27843.293126 eV Core-core repulsion = 23863.056860 eV Total energy + Delta-G solvation = -3980.236266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.70378 -41.02208 -39.99430 -37.47839 -35.48541 -34.75756 -33.35890 -32.38237 -31.16459 -30.33715 -29.40374 -29.17351 -26.72351 -24.97006 -24.56817 -23.18329 -22.80843 -21.83630 -20.67473 -20.22249 -19.01925 -18.37827 -17.84613 -17.10245 -16.67492 -16.58977 -16.07928 -15.76696 -15.37402 -15.10953 -14.86097 -14.80920 -14.34384 -14.05239 -13.82676 -13.44609 -13.22547 -12.86760 -12.68638 -12.42760 -12.31559 -12.22602 -12.02568 -11.82058 -11.73103 -11.10079 -10.91073 -10.81776 -10.58356 -10.53497 -10.29606 -10.25067 -9.81443 -9.68759 -9.53040 -9.36535 -8.65431 -8.19146 -7.50964 -6.26134 -4.31167 1.38942 1.72496 2.17234 2.46326 2.51079 2.92182 3.09924 3.21474 3.29242 3.35654 3.53916 3.68065 3.82001 3.93514 4.12431 4.28298 4.31141 4.36795 4.49583 4.53381 4.92686 4.96475 5.06835 5.09257 5.19630 5.25853 5.39076 5.45590 5.63515 5.67926 5.70579 5.80718 6.12193 6.31027 6.44040 6.45091 6.66341 6.87353 7.04216 7.35144 7.58947 7.69864 7.86998 8.00758 8.27843 8.32999 8.58650 8.78343 9.34700 10.82720 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002560 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.918451 B =10934.010840 C =11709.722373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.227 3.773 3 H 0.118 0.882 4 C 0.168 3.832 5 N -0.277 5.277 6 N -0.299 5.299 7 C 0.158 3.842 8 N -0.468 5.468 9 C 0.086 3.914 10 C 0.117 3.883 11 N -0.633 5.633 12 C 0.726 3.274 13 O -0.557 6.557 14 N -0.640 5.640 15 C 0.271 3.729 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.318 5.318 19 C 0.258 3.742 20 C -0.528 4.528 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.303 5.303 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.221 0.779 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -23.186 11.309 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.121 3.879 3 H 0.135 0.865 4 C -0.101 4.101 5 N -0.117 5.117 6 N -0.138 5.138 7 C -0.130 4.130 8 N -0.159 5.159 9 C -0.038 4.038 10 C -0.007 4.007 11 N -0.373 5.373 12 C 0.427 3.573 13 O -0.431 6.431 14 N -0.290 5.290 15 C 0.018 3.982 16 C -0.317 4.317 17 C -0.098 4.098 18 N -0.100 5.100 19 C 0.140 3.860 20 C -0.566 4.566 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.134 5.134 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.244 0.756 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.016 -21.400 12.219 24.725 hybrid contribution -0.358 -0.802 -0.980 1.316 sum -2.374 -22.202 11.239 24.997 Atomic orbital electron populations 1.22157 0.91552 1.03526 1.04451 1.19709 0.95515 0.94995 0.77717 0.86455 1.24747 1.01436 0.86869 0.97046 1.74090 1.17597 1.21255 0.98725 1.74534 1.14004 0.99201 1.26052 1.26380 1.03799 1.02767 0.80050 1.46127 1.44369 1.16597 1.08817 1.22549 1.02859 0.96347 0.81997 1.21787 0.99999 0.78808 1.00088 1.47465 1.66887 1.06383 1.16560 1.15345 0.78743 0.81118 0.82105 1.90884 1.49079 1.67156 1.35987 1.41495 1.66864 1.04364 1.16315 1.18757 1.01312 0.90613 0.87563 1.21455 1.16131 1.00814 0.93327 1.22560 1.01860 0.85795 0.99538 1.49095 1.44465 1.07851 1.08568 1.19767 0.99076 0.73587 0.93553 1.21288 0.95410 0.99200 1.40732 0.91217 1.24952 0.97447 0.97043 0.94671 1.69926 1.28940 1.14540 1.39933 0.86276 0.82927 0.79514 0.77805 1.19539 1.20671 1.20778 1.77350 1.23897 1.11056 1.01062 0.91785 0.89612 0.90159 0.76253 0.88347 0.87157 0.85573 0.89666 0.75628 0.82275 0.81437 0.93677 0.92481 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.43 37.16 0.35 -0.79 16 2 C 0.23 2.00 3.11 -68.39 -0.21 1.78 16 3 H 0.12 1.04 6.06 -51.93 -0.31 0.73 16 4 C 0.17 1.70 7.16 -155.30 -1.11 0.59 16 5 N -0.28 -3.57 12.21 32.79 0.40 -3.17 16 6 N -0.30 -3.64 12.23 29.60 0.36 -3.28 16 7 C 0.16 1.25 12.81 -90.33 -1.16 0.09 16 8 N -0.47 -3.62 3.11 -115.47 -0.36 -3.98 16 9 C 0.09 0.39 7.18 -4.02 -0.03 0.36 16 10 C 0.12 0.70 6.30 -3.56 -0.02 0.68 16 11 N -0.63 -5.86 2.63 -171.52 -0.45 -6.31 16 12 C 0.73 9.65 8.28 -86.92 -0.72 8.93 16 13 O -0.56 -8.76 12.95 5.29 0.07 -8.70 16 14 N -0.64 -9.50 5.35 -15.51 -0.08 -9.58 16 15 C 0.27 5.24 8.11 -154.36 -1.25 3.98 16 16 C -0.29 -5.41 9.61 -39.83 -0.38 -5.79 16 17 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.21 3.67 -62.56 -0.23 -7.44 16 19 C 0.26 6.43 6.26 -5.20 -0.03 6.40 16 20 C -0.53 -14.47 9.23 -34.44 -0.32 -14.78 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 24 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 N -0.30 -6.78 12.41 31.44 0.39 -6.39 16 29 H 0.06 0.42 7.54 -51.93 -0.39 0.03 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.22 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 35 H 0.13 0.79 7.03 -51.93 -0.37 0.43 16 36 H 0.09 0.38 7.53 -51.93 -0.39 -0.01 16 37 H 0.41 5.13 6.49 -40.82 -0.26 4.87 16 38 H 0.16 2.90 5.93 -52.48 -0.31 2.58 16 39 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -35.71 354.68 -8.99 -44.69 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.96 Total: 3.20 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -5.18 Total: 3.85 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.77 Total: -64.52 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.71 -8.99 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.327 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds