Wall clock time and date at job start Tue Mar 31 2020 17:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.01359 * 2 1 4 4 C 1.50975 * 109.95614 * 121.24548 * 2 1 3 5 5 N 1.29731 * 128.66996 * 288.73896 * 4 2 1 6 6 N 1.28925 * 109.42251 * 179.23056 * 5 4 2 7 7 C 1.30826 * 109.74307 * 0.54971 * 6 5 4 8 8 N 1.34795 * 107.11712 * 359.68251 * 7 6 5 9 9 C 1.46220 * 128.60549 * 179.74876 * 8 7 6 10 10 C 1.53328 * 109.17973 * 161.73267 * 9 8 7 11 11 N 1.47078 * 109.24615 * 45.65050 * 10 9 8 12 12 C 1.34772 * 120.94605 * 116.43684 * 11 10 9 13 13 O 1.21588 * 120.00071 * 354.79390 * 12 11 10 14 14 N 1.34776 * 120.00158 * 174.79780 * 12 11 10 15 15 C 1.40196 * 120.00173 * 185.12123 * 14 12 11 16 16 C 1.40400 * 125.97203 * 359.97438 * 15 14 12 17 17 C 1.35246 * 107.86957 * 180.02562 * 16 15 14 18 18 N 1.34962 * 107.85754 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.97557 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47274 * 125.00107 * 19 18 17 21 21 H 1.07995 * 119.99896 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00258 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47311 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47255 * 119.99992 * 24 22 20 27 27 H 1.48509 * 109.46782 * 239.99931 * 24 22 20 28 28 N 1.31214 * 125.97454 * 179.69033 * 15 14 12 29 29 H 1.09002 * 109.47617 * 181.24677 * 1 2 3 30 30 H 1.08997 * 109.47296 * 301.24935 * 1 2 3 31 31 H 1.09003 * 109.47505 * 61.24373 * 1 2 3 32 32 H 1.07996 * 126.44061 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.51999 * 281.64497 * 9 8 7 34 34 H 1.09004 * 109.51899 * 41.81941 * 9 8 7 35 35 H 1.09002 * 109.51088 * 165.58119 * 10 9 8 36 36 H 1.09004 * 109.50797 * 285.72004 * 10 9 8 37 37 H 0.97000 * 120.00133 * 5.11371 * 14 12 11 38 38 H 1.08003 * 126.06470 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.07302 * 180.02562 * 17 16 15 40 40 H 1.09003 * 109.47221 * 244.99587 * 19 18 17 41 41 H 1.08996 * 109.47544 * 4.99987 * 19 18 17 42 42 H 0.96993 * 119.99910 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0453 -0.7361 1.2133 5 7 2.0161 -0.3688 2.4572 6 7 2.5452 -1.2893 3.1885 7 6 2.9448 -2.2794 2.4323 8 7 2.6390 -1.9554 1.1601 9 6 2.8815 -2.7232 -0.0604 10 6 1.9793 -2.1890 -1.1792 11 7 2.0335 -0.7193 -1.1856 12 6 2.5294 -0.0486 -2.2442 13 8 3.0266 -0.6581 -3.1714 14 7 2.4742 1.2976 -2.2751 15 6 2.8911 1.9902 -3.4205 16 6 3.3856 1.4111 -4.6001 17 6 3.6762 2.4110 -5.4631 18 7 3.3793 3.5799 -4.8573 19 6 3.5412 4.9153 -5.4375 20 6 2.2281 5.6522 -5.3762 21 1 1.3599 5.1738 -4.9476 22 6 2.1353 6.9376 -5.8665 23 7 3.1929 7.5207 -6.3872 24 14 0.5078 7.8512 -5.7898 25 1 -0.5191 6.9814 -5.1621 26 1 0.6713 9.0868 -4.9824 27 1 0.0773 8.2116 -7.1647 28 7 2.8825 3.2926 -3.5796 29 1 -0.3634 -1.0274 0.0224 30 1 -0.3634 0.5331 0.8785 31 1 -0.3634 0.4944 -0.9009 32 1 3.4247 -3.1877 2.7653 33 1 3.9260 -2.6198 -0.3542 34 1 2.6552 -3.7742 0.1195 35 1 2.3260 -2.5702 -2.1397 36 1 0.9535 -2.5148 -1.0063 37 1 2.1460 1.7874 -1.5048 38 1 3.5115 0.3546 -4.7854 39 1 4.0751 2.2948 -6.4600 40 1 4.2940 5.4672 -4.8747 41 1 3.8585 4.8242 -6.4763 42 1 3.1277 8.4251 -6.7317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365486282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:14 Heat of formation + Delta-G solvation = 139.608819 kcal Electronic energy + Delta-G solvation = -27844.248242 eV Core-core repulsion = 23863.056860 eV Total energy + Delta-G solvation = -3981.191382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.38930 -42.32380 -41.23937 -38.33507 -36.47977 -35.86339 -35.17716 -33.14498 -32.75817 -31.18075 -30.88471 -29.93510 -28.50377 -25.87730 -25.22303 -24.76489 -23.58052 -22.95569 -22.01926 -21.46578 -20.04118 -19.28179 -18.70815 -18.54930 -18.06073 -17.68436 -17.10379 -16.92716 -16.36398 -16.15878 -16.03660 -15.86392 -15.58001 -15.37591 -14.65654 -14.51447 -14.26777 -14.08050 -13.83702 -13.77289 -13.61678 -13.24272 -12.94337 -12.90649 -12.72611 -12.64389 -12.43766 -12.29905 -12.09544 -11.69042 -11.51905 -11.39760 -11.18979 -11.15553 -10.71728 -10.45052 -10.17294 -9.74819 -9.08974 -8.32403 -6.46101 0.75350 0.84756 1.05806 1.37865 1.39660 1.47830 1.52299 1.60316 1.76728 1.87200 2.29714 2.34761 2.59937 2.89965 2.99659 3.33721 3.58875 3.77460 3.87491 3.91792 3.98368 4.08519 4.26988 4.32654 4.46764 4.58960 4.65611 4.68064 4.75500 4.78793 4.87777 4.93900 4.98518 5.00220 5.03956 5.15347 5.29795 5.47070 5.58972 5.82117 5.86776 5.92863 6.28806 6.42284 6.66638 7.06141 7.19546 7.23981 7.61447 8.75445 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002560 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.918451 B =10934.010840 C =11709.722373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.228 3.772 3 H 0.110 0.890 4 C 0.162 3.838 5 N -0.318 5.318 6 N -0.350 5.350 7 C 0.178 3.822 8 N -0.466 5.466 9 C 0.088 3.912 10 C 0.109 3.891 11 N -0.622 5.622 12 C 0.727 3.273 13 O -0.580 6.580 14 N -0.638 5.638 15 C 0.282 3.718 16 C -0.288 4.288 17 C 0.057 3.943 18 N -0.344 5.344 19 C 0.272 3.728 20 C -0.545 4.545 21 H 0.053 0.947 22 C 0.018 3.982 23 N -0.921 5.921 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.275 1.275 27 H -0.270 1.270 28 N -0.348 5.348 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.415 0.585 38 H 0.171 0.829 39 H 0.202 0.798 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -25.657 11.432 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.121 3.879 3 H 0.128 0.872 4 C -0.108 4.108 5 N -0.157 5.157 6 N -0.189 5.189 7 C -0.110 4.110 8 N -0.157 5.157 9 C -0.034 4.034 10 C -0.013 4.013 11 N -0.360 5.360 12 C 0.428 3.572 13 O -0.457 6.457 14 N -0.291 5.291 15 C 0.027 3.973 16 C -0.319 4.319 17 C -0.091 4.091 18 N -0.126 5.126 19 C 0.153 3.847 20 C -0.583 4.583 21 H 0.071 0.929 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.200 1.200 27 H -0.195 1.195 28 N -0.178 5.178 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.282 0.718 33 H 0.117 0.883 34 H 0.173 0.827 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.254 0.746 38 H 0.188 0.812 39 H 0.219 0.781 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.719 -23.924 12.379 27.074 hybrid contribution -0.099 -0.222 -0.950 0.980 sum -2.818 -24.146 11.429 26.863 Atomic orbital electron populations 1.22097 0.90232 1.04266 1.04320 1.19746 0.96409 0.94534 0.77162 0.87202 1.24781 1.01689 0.87846 0.96512 1.73984 1.19134 1.22591 1.00034 1.74437 1.16202 1.00661 1.27577 1.27206 1.01498 1.02790 0.79541 1.46333 1.43592 1.15952 1.09777 1.22804 1.02489 0.98077 0.80041 1.22141 1.01864 0.76404 1.00921 1.47466 1.65476 1.07727 1.15313 1.15430 0.78581 0.80394 0.82786 1.90854 1.50188 1.67392 1.37245 1.41573 1.66914 1.05124 1.15465 1.19056 0.99460 0.90015 0.88813 1.21658 1.15969 1.01164 0.93111 1.23188 1.00537 0.84602 1.00815 1.48828 1.46669 1.07779 1.09353 1.19340 0.97375 0.74703 0.93248 1.21430 0.95860 0.99977 1.41034 0.92860 1.25738 1.00769 0.97653 0.94095 1.70001 1.30653 1.15048 1.40323 0.85307 0.78760 0.78122 0.78272 1.19778 1.20024 1.19521 1.77265 1.26119 1.12877 1.01585 0.90603 0.89724 0.90246 0.71785 0.88291 0.82664 0.85512 0.87452 0.74616 0.81153 0.78114 0.96195 0.92233 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.43 71.98 0.68 -1.32 16 2 C 0.23 3.78 3.11 44.14 0.14 3.92 16 3 H 0.11 1.96 6.06 -2.39 -0.01 1.95 16 4 C 0.16 3.09 7.16 138.22 0.99 4.08 16 5 N -0.32 -8.13 12.21 -50.19 -0.61 -8.75 16 6 N -0.35 -8.24 12.23 -60.26 -0.74 -8.98 16 7 C 0.18 2.34 12.81 180.25 2.31 4.65 16 8 N -0.47 -5.93 3.11 -519.25 -1.62 -7.55 16 9 C 0.09 0.46 7.18 86.54 0.62 1.08 16 10 C 0.11 0.98 6.30 86.38 0.54 1.52 16 11 N -0.62 -10.43 2.63 -814.84 -2.14 -12.58 16 12 C 0.73 18.52 8.28 179.06 1.48 20.00 16 13 O -0.58 -17.47 12.95 -3.99 -0.05 -17.52 16 14 N -0.64 -18.79 5.35 -321.24 -1.72 -20.51 16 15 C 0.28 10.91 8.11 133.31 1.08 11.99 16 16 C -0.29 -10.70 9.61 22.11 0.21 -10.49 16 17 C 0.06 2.17 11.44 83.52 0.96 3.12 16 18 N -0.34 -15.91 3.67 -351.85 -1.29 -17.20 16 19 C 0.27 13.99 6.26 85.63 0.54 14.53 16 20 C -0.54 -30.51 9.23 25.60 0.24 -30.27 16 21 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 22 C 0.02 0.97 5.46 84.65 0.46 1.43 16 23 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 24 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 N -0.35 -15.94 12.41 -54.43 -0.68 -16.61 16 29 H 0.07 0.83 7.54 -2.39 -0.02 0.81 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.27 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.16 -0.50 8.14 -2.38 -0.02 -0.52 16 35 H 0.13 1.23 7.03 -2.39 -0.02 1.21 16 36 H 0.11 0.55 7.53 -2.39 -0.02 0.53 16 37 H 0.42 10.56 6.49 -92.71 -0.60 9.96 16 38 H 0.17 5.97 5.93 -2.91 -0.02 5.96 16 39 H 0.20 5.96 8.06 -2.91 -0.02 5.93 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -79.67 354.68 4.19 -75.48 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.48 Total: 16.29 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 10.25 Total: 24.23 kcal Atomic # 7 Polarization: -135.44 SS G_CDS: -8.51 Total: -143.95 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -79.67 4.19 -75.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.089 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds