Wall clock time and date at job start Tue Mar 31 2020 17:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08992 * 109.94607 * 2 1 4 4 C 1.50976 * 110.02658 * 238.75515 * 2 1 3 5 5 N 1.29729 * 128.67570 * 49.94508 * 4 2 1 6 6 N 1.28918 * 109.43097 * 179.62494 * 5 4 2 7 7 C 1.30823 * 109.74247 * 0.10930 * 6 5 4 8 8 N 1.34795 * 107.11947 * 0.12847 * 7 6 5 9 9 C 1.46223 * 128.60536 * 179.53450 * 8 7 6 10 10 C 1.53334 * 109.17017 * 161.74579 * 9 8 7 11 11 N 1.47077 * 109.24102 * 45.66077 * 10 9 8 12 12 C 1.34771 * 120.95089 * 116.39496 * 11 10 9 13 13 O 1.21595 * 120.00159 * 185.11055 * 12 11 10 14 14 N 1.34775 * 120.00274 * 5.10694 * 12 11 10 15 15 C 1.40196 * 120.00383 * 185.26090 * 14 12 11 16 16 C 1.40399 * 125.97278 * 359.71390 * 15 14 12 17 17 C 1.35238 * 107.86823 * 179.82955 * 16 15 14 18 18 N 1.34970 * 107.85713 * 0.43435 * 17 16 15 19 19 C 1.46504 * 125.97386 * 179.74690 * 18 17 16 20 20 C 1.50698 * 109.46771 * 124.99711 * 19 18 17 21 21 H 1.08008 * 120.00163 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99919 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47612 * 59.99996 * 24 22 20 26 26 H 1.48503 * 109.47085 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47157 * 299.99635 * 24 22 20 28 28 N 1.31210 * 125.97342 * 180.02562 * 15 14 12 29 29 H 1.09004 * 109.47446 * 308.09368 * 1 2 3 30 30 H 1.09001 * 109.47574 * 68.09129 * 1 2 3 31 31 H 1.08997 * 109.47408 * 188.09105 * 1 2 3 32 32 H 1.08003 * 126.44693 * 180.15476 * 7 6 5 33 33 H 1.08992 * 109.51872 * 41.84163 * 9 8 7 34 34 H 1.08996 * 109.57052 * 281.68157 * 9 8 7 35 35 H 1.09002 * 109.51401 * 285.72992 * 10 9 8 36 36 H 1.09001 * 109.51053 * 165.59050 * 10 9 8 37 37 H 0.96999 * 119.99470 * 5.26064 * 14 12 11 38 38 H 1.08007 * 126.06411 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.07306 * 180.18038 * 17 16 15 40 40 H 1.08998 * 109.46875 * 244.99828 * 19 18 17 41 41 H 1.08996 * 109.47399 * 5.00184 * 19 18 17 42 42 H 0.96999 * 120.00624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9017 1.0245 0.0000 4 6 2.0469 -0.7358 -1.2127 5 7 1.7122 -0.5838 -2.4569 6 7 2.3917 -1.4010 -3.1866 7 6 3.1887 -2.1110 -2.4302 8 7 2.9887 -1.7117 -1.1584 9 6 3.6273 -2.2009 0.0626 10 6 3.4334 -1.1694 1.1804 11 7 2.0335 -0.7184 1.1861 12 6 1.2333 -0.9551 2.2445 13 8 0.0553 -0.6579 2.1946 14 7 1.7388 -1.5212 3.3582 15 6 0.8874 -1.8685 4.4164 16 6 -0.5033 -1.6791 4.4522 17 6 -0.9554 -2.1466 5.6380 18 7 0.1061 -2.6062 6.3335 19 6 0.0667 -3.1951 7.6744 20 6 0.7107 -4.5572 7.6438 21 1 1.1098 -4.9453 6.7182 22 6 0.7914 -5.3077 8.7977 23 7 0.3069 -4.8346 9.9250 24 14 1.5902 -6.9958 8.7599 25 1 3.0017 -6.8658 8.3172 26 1 1.5514 -7.5923 10.1193 27 1 0.8532 -7.8712 7.8135 28 7 1.2516 -2.4222 5.5488 29 1 -0.3634 0.6340 0.8088 30 1 -0.3634 0.3834 -0.9534 31 1 -0.3634 -1.0174 0.1446 32 1 3.8778 -2.8735 -2.7623 33 1 4.6923 -2.3474 -0.1170 34 1 3.1741 -3.1473 0.3577 35 1 4.0898 -0.3167 1.0068 36 1 3.6731 -1.6245 2.1414 37 1 2.6918 -1.6884 3.4275 38 1 -1.1057 -1.2409 3.6701 39 1 -1.9828 -2.1479 5.9711 40 1 0.6078 -2.5529 8.3692 41 1 -0.9693 -3.2903 7.9992 42 1 0.3639 -5.3623 10.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365486284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:18 Heat of formation + Delta-G solvation = 175.122513 kcal Electronic energy + Delta-G solvation = -27938.947496 eV Core-core repulsion = 23959.296103 eV Total energy + Delta-G solvation = -3979.651393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65940 -41.09581 -40.05349 -37.35428 -35.54971 -34.67271 -33.56604 -32.49345 -30.86406 -30.45757 -29.40870 -28.79217 -26.75157 -25.30734 -24.22808 -23.13377 -22.67754 -21.90452 -20.77438 -20.13869 -19.31955 -18.36660 -17.38430 -17.09287 -16.75322 -16.60683 -16.14166 -16.08191 -15.24097 -15.07803 -14.82161 -14.72641 -14.28372 -14.12740 -13.72631 -13.58765 -13.12990 -12.78876 -12.51783 -12.42163 -12.37108 -12.20915 -11.90398 -11.78856 -11.65801 -11.12620 -10.90450 -10.77350 -10.58532 -10.52982 -10.31084 -10.02013 -9.68667 -9.58717 -9.41701 -9.29402 -8.68375 -8.21373 -7.52812 -6.29465 -4.34945 1.43372 1.73250 2.14608 2.47738 2.55319 2.93192 3.08228 3.20336 3.24377 3.28088 3.62681 3.65378 3.76522 3.92601 4.08096 4.25656 4.27808 4.32809 4.64411 4.70464 4.79769 4.95495 5.04835 5.05751 5.33004 5.37878 5.50248 5.67928 5.71978 5.86484 5.91075 6.10215 6.31706 6.37337 6.43982 6.48837 6.67278 6.85978 7.01009 7.34764 7.58416 7.66357 7.84062 7.98210 8.31644 8.37339 8.55679 8.73756 9.30724 10.79230 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.002566 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.942880 B =10911.045709 C =11856.953644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.256 3.744 3 H 0.105 0.895 4 C 0.168 3.832 5 N -0.278 5.278 6 N -0.300 5.300 7 C 0.156 3.844 8 N -0.471 5.471 9 C 0.087 3.913 10 C 0.095 3.905 11 N -0.636 5.636 12 C 0.723 3.277 13 O -0.545 6.545 14 N -0.642 5.642 15 C 0.272 3.728 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.530 4.530 21 H 0.068 0.932 22 C 0.063 3.937 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.306 5.306 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.220 0.780 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.403 0.597 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 7.713 -18.257 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.151 3.849 3 H 0.123 0.877 4 C -0.101 4.101 5 N -0.118 5.118 6 N -0.139 5.139 7 C -0.131 4.131 8 N -0.162 5.162 9 C -0.037 4.037 10 C -0.030 4.030 11 N -0.376 5.376 12 C 0.424 3.576 13 O -0.418 6.418 14 N -0.294 5.294 15 C 0.018 3.982 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.568 4.568 21 H 0.086 0.914 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.137 5.137 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.237 0.763 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.240 0.760 38 H 0.179 0.821 39 H 0.185 0.815 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.229 7.884 -18.499 21.368 hybrid contribution 1.268 -1.585 0.816 2.188 sum 8.497 6.299 -17.683 20.605 Atomic orbital electron populations 1.22164 0.89306 1.04972 1.02783 1.19650 0.97284 0.92698 0.75302 0.87723 1.25142 0.93460 0.94077 0.97420 1.74055 1.20229 1.18647 0.98846 1.74522 1.07162 1.06048 1.26129 1.26370 1.03454 1.03238 0.80070 1.46101 1.31852 1.29616 1.08627 1.22468 0.99811 0.99245 0.82206 1.22002 0.83681 0.98111 0.99174 1.47447 1.11160 1.62111 1.16914 1.15395 0.84515 0.78485 0.79172 1.90934 1.13869 1.55960 1.81080 1.41612 1.10148 1.63731 1.13906 1.18752 0.89850 1.00832 0.88742 1.21492 0.92949 1.16371 1.00829 1.22575 0.94631 0.99347 0.93192 1.49075 1.02045 1.43714 1.15213 1.19747 0.99396 0.94011 0.72716 1.21202 1.39425 1.00133 0.96083 0.91409 1.24942 0.95267 0.98896 0.94934 1.69900 1.45268 1.38350 0.99744 0.86389 0.79933 0.82978 0.77195 1.19980 1.21009 1.20047 1.77308 1.09681 1.24410 1.02347 0.88596 0.91716 0.91274 0.76322 0.87020 0.88383 0.89001 0.87320 0.75972 0.82139 0.81451 0.93706 0.92491 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 7.67 37.15 0.29 -1.20 16 2 C 0.26 2.44 3.85 -68.39 -0.26 2.17 16 3 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.17 1.78 7.17 -155.29 -1.11 0.66 16 5 N -0.28 -3.67 12.18 32.79 0.40 -3.27 16 6 N -0.30 -3.74 12.23 29.60 0.36 -3.38 16 7 C 0.16 1.30 12.81 -90.33 -1.16 0.14 16 8 N -0.47 -3.78 3.11 -115.47 -0.36 -4.14 16 9 C 0.09 0.39 7.18 -4.02 -0.03 0.36 16 10 C 0.09 0.47 6.41 -3.55 -0.02 0.45 16 11 N -0.64 -5.76 2.97 -171.52 -0.51 -6.27 16 12 C 0.72 9.23 8.13 -86.92 -0.71 8.53 16 13 O -0.54 -8.39 9.35 5.28 0.05 -8.34 16 14 N -0.64 -8.70 5.35 -15.51 -0.08 -8.78 16 15 C 0.27 5.02 8.11 -154.36 -1.25 3.77 16 16 C -0.28 -5.28 9.61 -39.84 -0.38 -5.66 16 17 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 18 N -0.32 -7.07 3.67 -62.56 -0.23 -7.30 16 19 C 0.26 6.35 6.26 -5.19 -0.03 6.32 16 20 C -0.53 -14.28 9.24 -34.44 -0.32 -14.60 16 21 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 24 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 N -0.31 -6.61 12.42 31.44 0.39 -6.22 16 29 H 0.10 1.13 6.53 -51.93 -0.34 0.79 16 30 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.07 0.92 7.21 -51.93 -0.37 0.54 16 32 H 0.22 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.11 0.41 5.62 -51.93 -0.29 0.11 16 37 H 0.40 4.21 6.36 -40.82 -0.26 3.95 16 38 H 0.16 2.88 5.93 -52.48 -0.31 2.57 16 39 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -35.14 349.52 -9.20 -44.34 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.92 Total: 3.06 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -5.29 Total: 3.32 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.71 Total: -63.37 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.05 Total: -8.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.14 -9.20 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.464 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds