Wall clock time and date at job start Tue Mar 31 2020 17:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08992 * 109.94607 * 2 1 4 4 C 1.50976 * 110.02658 * 238.75515 * 2 1 3 5 5 N 1.29729 * 128.67570 * 49.94508 * 4 2 1 6 6 N 1.28918 * 109.43097 * 179.62494 * 5 4 2 7 7 C 1.30823 * 109.74247 * 0.10930 * 6 5 4 8 8 N 1.34795 * 107.11947 * 0.12847 * 7 6 5 9 9 C 1.46223 * 128.60536 * 179.53450 * 8 7 6 10 10 C 1.53334 * 109.17017 * 161.74579 * 9 8 7 11 11 N 1.47077 * 109.24102 * 45.66077 * 10 9 8 12 12 C 1.34771 * 120.95089 * 116.39496 * 11 10 9 13 13 O 1.21595 * 120.00159 * 185.11055 * 12 11 10 14 14 N 1.34775 * 120.00274 * 5.10694 * 12 11 10 15 15 C 1.40196 * 120.00383 * 185.26090 * 14 12 11 16 16 C 1.40399 * 125.97278 * 359.71390 * 15 14 12 17 17 C 1.35238 * 107.86823 * 179.82955 * 16 15 14 18 18 N 1.34970 * 107.85713 * 0.43435 * 17 16 15 19 19 C 1.46504 * 125.97386 * 179.74690 * 18 17 16 20 20 C 1.50698 * 109.46771 * 124.99711 * 19 18 17 21 21 H 1.08008 * 120.00163 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99919 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47612 * 59.99996 * 24 22 20 26 26 H 1.48503 * 109.47085 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47157 * 299.99635 * 24 22 20 28 28 N 1.31210 * 125.97342 * 180.02562 * 15 14 12 29 29 H 1.09004 * 109.47446 * 308.09368 * 1 2 3 30 30 H 1.09001 * 109.47574 * 68.09129 * 1 2 3 31 31 H 1.08997 * 109.47408 * 188.09105 * 1 2 3 32 32 H 1.08003 * 126.44693 * 180.15476 * 7 6 5 33 33 H 1.08992 * 109.51872 * 41.84163 * 9 8 7 34 34 H 1.08996 * 109.57052 * 281.68157 * 9 8 7 35 35 H 1.09002 * 109.51401 * 285.72992 * 10 9 8 36 36 H 1.09001 * 109.51053 * 165.59050 * 10 9 8 37 37 H 0.96999 * 119.99470 * 5.26064 * 14 12 11 38 38 H 1.08007 * 126.06411 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.07306 * 180.18038 * 17 16 15 40 40 H 1.08998 * 109.46875 * 244.99828 * 19 18 17 41 41 H 1.08996 * 109.47399 * 5.00184 * 19 18 17 42 42 H 0.96999 * 120.00624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9017 1.0245 0.0000 4 6 2.0469 -0.7358 -1.2127 5 7 1.7122 -0.5838 -2.4569 6 7 2.3917 -1.4010 -3.1866 7 6 3.1887 -2.1110 -2.4302 8 7 2.9887 -1.7117 -1.1584 9 6 3.6273 -2.2009 0.0626 10 6 3.4334 -1.1694 1.1804 11 7 2.0335 -0.7184 1.1861 12 6 1.2333 -0.9551 2.2445 13 8 0.0553 -0.6579 2.1946 14 7 1.7388 -1.5212 3.3582 15 6 0.8874 -1.8685 4.4164 16 6 -0.5033 -1.6791 4.4522 17 6 -0.9554 -2.1466 5.6380 18 7 0.1061 -2.6062 6.3335 19 6 0.0667 -3.1951 7.6744 20 6 0.7107 -4.5572 7.6438 21 1 1.1098 -4.9453 6.7182 22 6 0.7914 -5.3077 8.7977 23 7 0.3069 -4.8346 9.9250 24 14 1.5902 -6.9958 8.7599 25 1 3.0017 -6.8658 8.3172 26 1 1.5514 -7.5923 10.1193 27 1 0.8532 -7.8712 7.8135 28 7 1.2516 -2.4222 5.5488 29 1 -0.3634 0.6340 0.8088 30 1 -0.3634 0.3834 -0.9534 31 1 -0.3634 -1.0174 0.1446 32 1 3.8778 -2.8735 -2.7623 33 1 4.6923 -2.3474 -0.1170 34 1 3.1741 -3.1473 0.3577 35 1 4.0898 -0.3167 1.0068 36 1 3.6731 -1.6245 2.1414 37 1 2.6918 -1.6884 3.4275 38 1 -1.1057 -1.2409 3.6701 39 1 -1.9828 -2.1479 5.9711 40 1 0.6078 -2.5529 8.3692 41 1 -0.9693 -3.2903 7.9992 42 1 0.3639 -5.3623 10.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365486284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:17 Heat of formation + Delta-G solvation = 153.365179 kcal Electronic energy + Delta-G solvation = -27939.890965 eV Core-core repulsion = 23959.296103 eV Total energy + Delta-G solvation = -3980.594862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.36398 -42.32660 -41.29369 -38.16461 -36.64093 -35.54739 -35.36604 -33.58177 -32.36465 -31.15759 -30.90479 -29.60348 -28.49196 -26.19908 -25.06626 -24.65339 -23.41744 -22.99155 -22.04176 -21.37036 -20.35779 -19.15116 -18.69156 -18.40325 -17.83344 -17.60404 -17.34279 -16.97339 -16.51903 -16.06904 -15.98218 -15.67948 -15.58994 -15.31964 -14.62278 -14.55527 -14.26669 -14.15288 -13.86996 -13.71425 -13.43604 -13.16638 -13.09742 -12.92722 -12.74123 -12.68367 -12.44302 -12.26259 -12.06343 -11.56172 -11.50142 -11.37330 -11.15671 -10.70889 -10.62518 -10.36041 -10.09358 -9.72127 -9.05987 -8.31357 -6.45654 0.75579 0.85619 1.08335 1.39693 1.41190 1.46348 1.50348 1.65640 1.79042 1.91569 2.34061 2.35829 2.68024 3.00345 3.01348 3.27736 3.57944 3.85673 3.90667 3.98950 4.02783 4.11371 4.25641 4.33040 4.38746 4.56380 4.66627 4.71698 4.78297 4.88536 4.95943 4.96945 5.00753 5.03552 5.08423 5.33790 5.43516 5.52033 5.59498 5.82764 5.87070 5.97208 6.29633 6.51548 6.66994 7.09173 7.24311 7.29694 7.63642 8.75913 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.002566 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.942880 B =10911.045709 C =11856.953644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.259 3.741 3 H 0.126 0.874 4 C 0.162 3.838 5 N -0.318 5.318 6 N -0.351 5.351 7 C 0.175 3.825 8 N -0.468 5.468 9 C 0.084 3.916 10 C 0.086 3.914 11 N -0.626 5.626 12 C 0.722 3.278 13 O -0.574 6.574 14 N -0.632 5.632 15 C 0.286 3.714 16 C -0.290 4.290 17 C 0.054 3.946 18 N -0.345 5.345 19 C 0.273 3.727 20 C -0.546 4.546 21 H 0.054 0.946 22 C 0.018 3.982 23 N -0.922 5.922 24 Si 0.971 3.029 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 N -0.344 5.344 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.418 0.582 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 6.903 -19.188 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.153 3.847 3 H 0.144 0.856 4 C -0.109 4.109 5 N -0.157 5.157 6 N -0.189 5.189 7 C -0.113 4.113 8 N -0.159 5.159 9 C -0.038 4.038 10 C -0.036 4.036 11 N -0.365 5.365 12 C 0.423 3.577 13 O -0.450 6.450 14 N -0.287 5.287 15 C 0.030 3.970 16 C -0.321 4.321 17 C -0.094 4.094 18 N -0.127 5.127 19 C 0.154 3.846 20 C -0.585 4.585 21 H 0.073 0.927 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.795 3.205 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.196 1.196 28 N -0.175 5.175 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.280 0.720 33 H 0.174 0.826 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.259 0.741 38 H 0.185 0.815 39 H 0.214 0.786 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.397 7.087 -19.469 22.750 hybrid contribution 0.633 -1.277 0.979 1.729 sum 10.030 5.810 -18.490 21.823 Atomic orbital electron populations 1.21972 0.90879 1.02969 1.02335 1.19655 0.96092 0.93726 0.75194 0.85619 1.25127 0.94083 0.94869 0.96841 1.73949 1.21591 1.20044 1.00139 1.74426 1.09131 1.07694 1.27658 1.27176 1.02181 1.02288 0.79670 1.46314 1.31172 1.28737 1.09664 1.22792 1.02104 0.98502 0.80408 1.22408 0.81300 0.99550 1.00367 1.47381 1.12483 1.61287 1.15357 1.15515 0.84478 0.78103 0.79558 1.90919 1.15455 1.57015 1.81640 1.41551 1.10488 1.63648 1.12970 1.19008 0.90588 0.98686 0.88715 1.21677 0.93292 1.16346 1.00797 1.23142 0.95372 0.97962 0.92936 1.48806 1.03189 1.45661 1.15057 1.19313 0.98577 0.92764 0.73909 1.21376 1.39923 1.01383 0.95781 0.92733 1.25744 0.95590 1.02462 0.94463 1.69987 1.46009 1.39747 1.00279 0.85411 0.79001 0.78538 0.77554 1.19550 1.20085 1.19557 1.77225 1.10114 1.26560 1.03586 0.89453 0.91711 0.93883 0.71984 0.82620 0.88467 0.86408 0.85823 0.74144 0.81471 0.78563 0.96065 0.92598 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 7.67 71.98 0.55 -2.21 16 2 C 0.26 4.58 3.85 44.13 0.17 4.75 16 3 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.16 3.18 7.17 138.22 0.99 4.18 16 5 N -0.32 -8.28 12.18 -50.18 -0.61 -8.89 16 6 N -0.35 -8.44 12.23 -60.26 -0.74 -9.18 16 7 C 0.18 2.44 12.81 180.25 2.31 4.75 16 8 N -0.47 -6.17 3.11 -519.24 -1.62 -7.78 16 9 C 0.08 0.40 7.18 86.54 0.62 1.02 16 10 C 0.09 0.54 6.41 86.38 0.55 1.10 16 11 N -0.63 -10.00 2.97 -814.84 -2.42 -12.42 16 12 C 0.72 17.46 8.13 179.06 1.46 18.92 16 13 O -0.57 -17.48 9.35 -4.02 -0.04 -17.52 16 14 N -0.63 -16.17 5.35 -321.23 -1.72 -17.89 16 15 C 0.29 10.37 8.11 133.31 1.08 11.45 16 16 C -0.29 -10.61 9.61 22.10 0.21 -10.40 16 17 C 0.05 2.05 11.44 83.52 0.96 3.00 16 18 N -0.35 -15.49 3.67 -351.84 -1.29 -16.78 16 19 C 0.27 13.74 6.26 85.63 0.54 14.27 16 20 C -0.55 -29.82 9.24 25.60 0.24 -29.59 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.02 0.96 5.46 84.66 0.46 1.42 16 23 N -0.92 -51.22 13.29 21.45 0.28 -50.93 16 24 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 N -0.34 -14.87 12.42 -54.44 -0.68 -15.55 16 29 H 0.09 2.09 6.53 -2.38 -0.02 2.08 16 30 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 31 H 0.04 1.17 7.21 -2.39 -0.02 1.15 16 32 H 0.26 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.12 0.44 5.62 -2.39 -0.01 0.43 16 37 H 0.42 7.80 6.36 -92.71 -0.59 7.21 16 38 H 0.17 5.94 5.93 -2.91 -0.02 5.92 16 39 H 0.20 5.92 8.06 -2.91 -0.02 5.89 16 40 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 2.77 8.07 -2.39 -0.02 2.75 16 42 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -79.15 349.52 3.84 -75.32 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.49 Total: 14.80 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 10.14 Total: 22.66 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -8.78 Total: -139.43 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.04 Total: -17.52 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -79.15 3.84 -75.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365486284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.682 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds