Wall clock time and date at job start Tue Mar 31 2020 16:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 N 1.46495 * 109.47772 * 120.00198 * 2 1 3 5 5 C 1.46500 * 119.99960 * 300.00184 * 4 2 1 6 6 C 1.50706 * 109.46949 * 84.99526 * 5 4 2 7 7 H 1.07999 * 120.00196 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99426 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47776 * 59.99746 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47028 * 299.99350 * 10 8 6 14 14 S 1.65602 * 120.00128 * 119.99342 * 4 2 1 15 15 O 1.42104 * 104.27487 * 26.07596 * 14 4 2 16 16 O 1.42097 * 104.27690 * 153.93051 * 14 4 2 17 17 C 1.81393 * 104.45243 * 270.00756 * 14 4 2 18 18 C 1.53007 * 109.47168 * 179.97438 * 17 14 4 19 19 H 1.08999 * 109.86542 * 58.99175 * 18 17 14 20 20 C 1.54403 * 109.87828 * 179.97438 * 18 17 14 21 21 C 1.53479 * 103.78385 * 122.22178 * 20 18 17 22 22 C 1.52388 * 116.30630 * 250.78210 * 21 20 18 23 23 C 1.54045 * 86.63050 * 216.51621 * 22 21 20 24 24 C 1.52366 * 116.32750 * 148.46011 * 21 20 18 25 25 C 1.53669 * 103.67477 * 19.60277 * 21 20 18 26 26 O 1.43849 * 109.87500 * 297.82650 * 18 17 14 27 27 H 1.09006 * 109.47098 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.47515 * 59.99641 * 1 2 3 29 29 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46876 * 240.00714 * 2 1 3 31 31 H 1.09001 * 109.46698 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47287 * 300.00499 * 3 2 1 33 33 H 1.08992 * 109.47046 * 60.00702 * 3 2 1 34 34 H 1.09000 * 109.46609 * 324.99706 * 5 4 2 35 35 H 1.09000 * 109.47175 * 204.99500 * 5 4 2 36 36 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.46905 * 299.99598 * 17 14 4 38 38 H 1.09005 * 109.47366 * 59.99756 * 17 14 4 39 39 H 1.08998 * 110.56348 * 240.79334 * 20 18 17 40 40 H 1.08998 * 110.56565 * 3.64079 * 20 18 17 41 41 H 1.09001 * 113.67972 * 330.94717 * 22 21 20 42 42 H 1.08995 * 113.68525 * 102.08047 * 22 21 20 43 43 H 1.08998 * 113.56572 * 269.75130 * 23 22 21 44 44 H 1.08996 * 113.56456 * 138.99323 * 23 22 21 45 45 H 1.08995 * 113.69286 * 257.89889 * 24 21 20 46 46 H 1.09000 * 113.68373 * 28.93774 * 24 21 20 47 47 H 1.09000 * 110.63785 * 83.06525 * 25 21 20 48 48 H 1.09001 * 110.64253 * 205.96060 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6646 -0.1902 2.5267 6 6 0.3226 -0.7440 2.9311 7 1 -0.2129 -1.4031 2.2639 8 6 -0.2214 -0.4091 4.1530 9 7 0.4309 0.3932 4.9656 10 14 -1.8845 -1.0961 4.6546 11 1 -1.8186 -2.5792 4.6856 12 1 -2.2438 -0.5877 6.0029 13 1 -2.9136 -0.6667 3.6739 14 16 2.9704 -2.0371 1.0440 15 8 3.6004 -1.8798 -0.2200 16 8 3.7317 -2.0653 2.2435 17 6 1.7964 -3.4192 1.0024 18 6 2.5633 -4.7357 0.8618 19 1 3.2519 -4.8544 1.6984 20 6 1.5724 -5.9193 0.8261 21 6 1.8780 -6.6119 -0.5090 22 6 0.8215 -6.4742 -1.5986 23 6 1.1728 -7.9206 -1.9953 24 6 1.6693 -8.1206 -0.5509 25 6 3.2870 -6.1117 -0.8636 26 8 3.2900 -4.7482 -0.3795 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6166 0.8985 2.5044 35 1 2.4198 -0.5060 3.2464 36 1 0.0483 0.6284 5.8253 37 1 1.2178 -3.4323 1.9261 38 1 1.1233 -3.2988 0.1536 39 1 1.7555 -6.5972 1.6598 40 1 0.5441 -5.5584 0.8437 41 1 -0.1918 -6.3594 -1.2138 42 1 1.0729 -5.7375 -2.3615 43 1 1.9644 -7.9878 -2.7416 44 1 0.3025 -8.5275 -2.2450 45 1 2.5944 -8.6928 -0.4812 46 1 0.8986 -8.4752 0.1335 47 1 4.0452 -6.7031 -0.3501 48 1 3.4447 -6.1397 -1.9417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413295437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:07 Heat of formation + Delta-G solvation = -103.255832 kcal Electronic energy + Delta-G solvation = -28614.303944 eV Core-core repulsion = 24796.979953 eV Total energy + Delta-G solvation = -3817.323991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75493 -37.23712 -36.84540 -36.34575 -35.15849 -32.81607 -32.30489 -30.56477 -29.57066 -26.94872 -26.56359 -26.17195 -26.02935 -23.11488 -22.76627 -21.35735 -20.16124 -18.90953 -17.96020 -17.11233 -16.65685 -16.36103 -16.18691 -15.75031 -15.47633 -15.12901 -14.84461 -14.52054 -13.96134 -13.68954 -13.50202 -13.40701 -13.04205 -12.85252 -12.53456 -12.37096 -12.25047 -12.02881 -11.81935 -11.77047 -11.68184 -11.43471 -11.32024 -11.31905 -11.11481 -11.06006 -10.88855 -10.79643 -10.75557 -10.55463 -10.43954 -10.38106 -10.28223 -10.06553 -9.75187 -9.70199 -9.56169 -8.48317 -7.94852 -6.10702 -4.16880 1.01626 3.23311 3.29500 3.30197 3.46746 3.63330 4.11670 4.27778 4.33501 4.38963 4.51919 4.56725 4.72685 4.81028 4.92219 5.06502 5.09782 5.21808 5.30164 5.39384 5.43403 5.45393 5.49782 5.55662 5.60499 5.66931 5.73702 5.75582 5.78560 5.82832 5.86634 6.04917 6.09140 6.11792 6.15524 6.21337 6.36527 6.50683 6.63671 6.73482 6.83678 7.13811 7.44946 7.50018 7.74908 7.87063 8.17089 8.86834 9.48010 10.97026 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004451 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.760303 B = 6289.725326 C = 7332.278598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 C -0.155 4.155 4 N -0.982 5.982 5 C 0.242 3.758 6 C -0.541 4.541 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.887 5.887 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 S 2.614 3.386 15 O -0.963 6.963 16 O -0.959 6.959 17 C -0.635 4.635 18 C 0.086 3.914 19 H 0.083 0.917 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.125 4.125 25 C 0.071 3.929 26 O -0.366 6.366 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.265 0.735 37 H 0.152 0.848 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -13.036 -12.025 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 C -0.214 4.214 4 N -0.821 5.821 5 C 0.120 3.880 6 C -0.580 4.580 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 S 2.707 3.293 15 O -0.954 6.954 16 O -0.950 6.950 17 C -0.762 4.762 18 C 0.027 3.973 19 H 0.101 0.899 20 C -0.168 4.168 21 C -0.120 4.120 22 C -0.162 4.162 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.006 4.006 26 O -0.285 6.285 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.255 -12.753 -11.966 17.533 hybrid contribution -1.962 -0.749 0.648 2.198 sum -0.708 -13.502 -11.318 17.633 Atomic orbital electron populations 1.22228 0.95237 1.01864 1.02357 1.20633 0.94538 0.93676 0.86943 1.22071 1.01036 0.96327 1.01976 1.57540 1.69425 1.41525 1.13589 1.19198 0.96011 0.96498 0.76319 1.21595 1.04287 1.30185 1.01975 0.91924 1.24944 0.97474 0.95074 0.96315 1.69922 1.38189 1.34649 1.09773 0.86701 0.84334 0.79350 0.77861 1.20280 1.21195 1.20199 1.04700 0.75618 0.75226 0.73770 1.93520 1.73175 1.84930 1.43745 1.93551 1.67550 1.86233 1.47627 1.30935 1.17815 1.15322 1.12158 1.22410 0.92971 0.93704 0.88180 0.89949 1.22802 1.00662 0.96172 0.97165 1.22507 0.96814 0.96651 0.96006 1.22766 0.98446 0.97194 0.97839 1.22929 1.01239 0.97052 0.96676 1.22701 1.01706 0.94371 0.97417 1.23175 0.94183 0.82938 1.00294 1.89074 1.74805 1.27178 1.37459 0.89664 0.93594 0.93239 0.90036 0.92845 0.92576 0.91419 0.93976 0.92981 0.92552 0.83036 0.85107 0.89955 0.89518 0.89703 0.90765 0.90129 0.91381 0.91092 0.89663 0.91587 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.20 37.16 0.30 -2.37 16 2 C 0.15 2.68 3.19 -67.93 -0.22 2.47 16 3 C -0.16 -2.61 9.16 37.16 0.34 -2.27 16 4 N -0.98 -20.42 2.66 -108.57 -0.29 -20.71 16 5 C 0.24 5.91 4.98 -5.19 -0.03 5.88 16 6 C -0.54 -13.58 7.53 -34.44 -0.26 -13.84 16 7 H 0.06 1.48 7.08 -52.49 -0.37 1.11 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 10 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 S 2.61 53.22 5.24 -107.50 -0.56 52.66 16 15 O -0.96 -20.72 16.00 -60.86 -0.97 -21.69 16 16 O -0.96 -22.77 16.53 -57.54 -0.95 -23.72 16 17 C -0.64 -10.41 5.69 37.16 0.21 -10.20 16 18 C 0.09 1.28 3.48 -25.99 -0.09 1.19 16 19 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 20 C -0.13 -1.51 6.11 -25.75 -0.16 -1.66 16 21 C -0.12 -1.21 1.05 -154.59 -0.16 -1.37 16 22 C -0.13 -1.17 7.34 -26.50 -0.19 -1.37 16 23 C -0.14 -1.07 7.98 -25.68 -0.20 -1.27 16 24 C -0.12 -0.99 7.42 -26.51 -0.20 -1.18 16 25 C 0.07 0.80 6.95 37.51 0.26 1.06 16 26 O -0.37 -5.73 10.39 -38.50 -0.40 -6.13 16 27 H 0.08 1.65 6.65 -51.93 -0.35 1.31 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 30 H 0.08 1.39 6.87 -51.93 -0.36 1.03 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.22 6.69 -51.93 -0.35 0.87 16 34 H 0.04 1.07 6.45 -51.93 -0.33 0.74 16 35 H 0.05 1.42 6.82 -51.93 -0.35 1.07 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.15 2.47 8.14 -51.92 -0.42 2.05 16 38 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.09 0.99 7.47 -51.93 -0.39 0.60 16 41 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 42 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -31.71 385.64 -10.51 -42.22 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.37 Total: 3.89 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -0.49 Total: -23.30 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.45 Total: -44.90 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -2.33 Total: -51.54 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 53.22 SS G_CDS: -0.56 Total: 52.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.71 -10.51 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413295437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.039 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds