Wall clock time and date at job start Tue Mar 31 2020 16:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 N 1.46495 * 109.47772 * 120.00198 * 2 1 3 5 5 C 1.46500 * 119.99960 * 300.00184 * 4 2 1 6 6 C 1.50706 * 109.46949 * 84.99526 * 5 4 2 7 7 H 1.07999 * 120.00196 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99426 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47776 * 59.99746 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47028 * 299.99350 * 10 8 6 14 14 S 1.65602 * 120.00128 * 119.99342 * 4 2 1 15 15 O 1.42104 * 104.27487 * 26.07596 * 14 4 2 16 16 O 1.42097 * 104.27690 * 153.93051 * 14 4 2 17 17 C 1.81393 * 104.45243 * 270.00756 * 14 4 2 18 18 C 1.53007 * 109.47168 * 179.97438 * 17 14 4 19 19 H 1.08999 * 109.86542 * 58.99175 * 18 17 14 20 20 C 1.54403 * 109.87828 * 179.97438 * 18 17 14 21 21 C 1.53479 * 103.78385 * 122.22178 * 20 18 17 22 22 C 1.52388 * 116.30630 * 250.78210 * 21 20 18 23 23 C 1.54045 * 86.63050 * 216.51621 * 22 21 20 24 24 C 1.52366 * 116.32750 * 148.46011 * 21 20 18 25 25 C 1.53669 * 103.67477 * 19.60277 * 21 20 18 26 26 O 1.43849 * 109.87500 * 297.82650 * 18 17 14 27 27 H 1.09006 * 109.47098 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.47515 * 59.99641 * 1 2 3 29 29 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46876 * 240.00714 * 2 1 3 31 31 H 1.09001 * 109.46698 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47287 * 300.00499 * 3 2 1 33 33 H 1.08992 * 109.47046 * 60.00702 * 3 2 1 34 34 H 1.09000 * 109.46609 * 324.99706 * 5 4 2 35 35 H 1.09000 * 109.47175 * 204.99500 * 5 4 2 36 36 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.46905 * 299.99598 * 17 14 4 38 38 H 1.09005 * 109.47366 * 59.99756 * 17 14 4 39 39 H 1.08998 * 110.56348 * 240.79334 * 20 18 17 40 40 H 1.08998 * 110.56565 * 3.64079 * 20 18 17 41 41 H 1.09001 * 113.67972 * 330.94717 * 22 21 20 42 42 H 1.08995 * 113.68525 * 102.08047 * 22 21 20 43 43 H 1.08998 * 113.56572 * 269.75130 * 23 22 21 44 44 H 1.08996 * 113.56456 * 138.99323 * 23 22 21 45 45 H 1.08995 * 113.69286 * 257.89889 * 24 21 20 46 46 H 1.09000 * 113.68373 * 28.93774 * 24 21 20 47 47 H 1.09000 * 110.63785 * 83.06525 * 25 21 20 48 48 H 1.09001 * 110.64253 * 205.96060 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6646 -0.1902 2.5267 6 6 0.3226 -0.7440 2.9311 7 1 -0.2129 -1.4031 2.2639 8 6 -0.2214 -0.4091 4.1530 9 7 0.4309 0.3932 4.9656 10 14 -1.8845 -1.0961 4.6546 11 1 -1.8186 -2.5792 4.6856 12 1 -2.2438 -0.5877 6.0029 13 1 -2.9136 -0.6667 3.6739 14 16 2.9704 -2.0371 1.0440 15 8 3.6004 -1.8798 -0.2200 16 8 3.7317 -2.0653 2.2435 17 6 1.7964 -3.4192 1.0024 18 6 2.5633 -4.7357 0.8618 19 1 3.2519 -4.8544 1.6984 20 6 1.5724 -5.9193 0.8261 21 6 1.8780 -6.6119 -0.5090 22 6 0.8215 -6.4742 -1.5986 23 6 1.1728 -7.9206 -1.9953 24 6 1.6693 -8.1206 -0.5509 25 6 3.2870 -6.1117 -0.8636 26 8 3.2900 -4.7482 -0.3795 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6166 0.8985 2.5044 35 1 2.4198 -0.5060 3.2464 36 1 0.0483 0.6284 5.8253 37 1 1.2178 -3.4323 1.9261 38 1 1.1233 -3.2988 0.1536 39 1 1.7555 -6.5972 1.6598 40 1 0.5441 -5.5584 0.8437 41 1 -0.1918 -6.3594 -1.2138 42 1 1.0729 -5.7375 -2.3615 43 1 1.9644 -7.9878 -2.7416 44 1 0.3025 -8.5275 -2.2450 45 1 2.5944 -8.6928 -0.4812 46 1 0.8986 -8.4752 0.1335 47 1 4.0452 -6.7031 -0.3501 48 1 3.4447 -6.1397 -1.9417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413295437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:06 Heat of formation + Delta-G solvation = -123.548215 kcal Electronic energy + Delta-G solvation = -28615.183888 eV Core-core repulsion = 24796.979953 eV Total energy + Delta-G solvation = -3818.203935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60453 -38.45063 -38.14516 -38.05550 -36.87705 -34.75610 -33.47119 -32.21562 -30.48205 -28.80825 -27.93970 -27.25318 -26.66129 -24.71092 -23.86950 -22.42813 -21.64440 -19.76152 -19.51591 -18.71442 -18.51091 -17.80412 -17.31120 -16.92331 -16.60922 -16.40841 -16.22530 -15.87907 -15.34749 -14.98078 -14.84237 -14.64454 -14.25745 -14.02271 -13.77692 -13.66151 -13.62829 -13.49049 -13.19841 -13.06844 -12.93443 -12.91099 -12.88451 -12.67770 -12.55828 -12.54805 -12.33520 -12.15995 -12.09270 -12.03603 -11.72014 -11.51811 -11.34774 -11.29981 -11.11113 -10.98272 -10.77153 -10.50990 -9.65781 -8.11336 -6.24095 -0.58180 1.45765 1.46912 1.54248 1.84615 2.45192 2.63184 2.92476 3.19838 3.27254 3.31594 3.52157 3.60475 3.72816 3.86300 3.93502 3.96150 4.01881 4.24145 4.35568 4.38272 4.40001 4.50886 4.59952 4.64929 4.69058 4.74158 4.85152 4.88108 4.91733 4.92494 4.94265 5.02909 5.11506 5.12406 5.15933 5.18490 5.29094 5.38122 5.45266 5.52930 5.58464 5.73138 5.74921 5.85862 6.05382 6.16768 6.87210 7.44806 8.96838 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004451 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.760303 B = 6289.725326 C = 7332.278598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 C -0.154 4.154 4 N -0.989 5.989 5 C 0.259 3.741 6 C -0.535 4.535 7 H 0.080 0.920 8 C 0.010 3.990 9 N -0.931 5.931 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.292 1.292 13 H -0.265 1.265 14 S 2.607 3.393 15 O -0.980 6.980 16 O -1.005 7.005 17 C -0.609 4.609 18 C 0.077 3.923 19 H 0.077 0.923 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.134 4.134 24 C -0.117 4.117 25 C 0.060 3.940 26 O -0.396 6.396 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.023 0.977 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -15.522 -13.828 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.826 5.826 5 C 0.135 3.865 6 C -0.575 4.575 7 H 0.098 0.902 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.780 3.220 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.189 1.189 14 S 2.705 3.295 15 O -0.971 6.971 16 O -0.996 6.996 17 C -0.741 4.741 18 C 0.017 3.983 19 H 0.095 0.905 20 C -0.164 4.164 21 C -0.121 4.121 22 C -0.169 4.169 23 C -0.171 4.171 24 C -0.155 4.155 25 C -0.015 4.015 26 O -0.316 6.316 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.896 -15.207 -13.805 20.558 hybrid contribution -1.206 0.003 1.114 1.642 sum -2.102 -15.204 -12.692 19.916 Atomic orbital electron populations 1.22151 0.93930 1.02406 1.02558 1.20955 0.95665 0.94056 0.86109 1.22076 1.00509 0.96038 1.02711 1.57413 1.69498 1.42669 1.13048 1.18716 0.95014 0.95318 0.77451 1.21890 1.04068 1.29530 1.01968 0.90179 1.25812 1.01174 0.95449 0.96501 1.70079 1.40166 1.36551 1.10260 0.85650 0.79966 0.79105 0.77243 1.18999 1.21795 1.18946 1.04658 0.76104 0.76125 0.72620 1.93487 1.74233 1.85616 1.43716 1.93492 1.69725 1.87113 1.49233 1.30668 1.16490 1.13571 1.13397 1.22558 0.93719 0.93830 0.88165 0.90518 1.22837 0.99774 0.95051 0.98786 1.22538 0.96081 0.98220 0.95263 1.22834 0.98348 0.98262 0.97427 1.22910 1.01816 0.95741 0.96672 1.22708 1.02454 0.92544 0.97745 1.23468 0.95595 0.81319 1.01139 1.89042 1.75097 1.29863 1.37595 0.92477 0.90295 0.92495 0.88636 0.93730 0.89118 0.93339 0.95903 0.96801 0.92769 0.82643 0.82825 0.88401 0.89029 0.89352 0.91719 0.89515 0.90332 0.90120 0.88867 0.90370 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 8.20 71.98 0.59 -4.25 16 2 C 0.14 4.87 3.19 44.99 0.14 5.01 16 3 C -0.15 -5.17 9.16 71.98 0.66 -4.51 16 4 N -0.99 -41.80 2.66 -497.41 -1.32 -43.12 16 5 C 0.26 13.14 4.98 85.63 0.43 13.57 16 6 C -0.54 -26.98 7.53 25.60 0.19 -26.79 16 7 H 0.08 3.67 7.08 -2.91 -0.02 3.65 16 8 C 0.01 0.52 5.46 84.66 0.46 0.98 16 9 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 10 Si 0.96 40.92 29.54 68.60 2.03 42.94 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 14 S 2.61 108.10 5.24 -56.49 -0.30 107.80 16 15 O -0.98 -42.58 16.00 -124.48 -1.99 -44.57 16 16 O -1.00 -50.07 16.53 -127.65 -2.11 -52.18 16 17 C -0.61 -19.25 5.69 71.98 0.41 -18.84 16 18 C 0.08 2.18 3.48 31.07 0.11 2.29 16 19 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 20 C -0.13 -2.59 6.11 31.23 0.19 -2.40 16 21 C -0.12 -2.11 1.05 -52.23 -0.05 -2.16 16 22 C -0.13 -2.09 7.34 30.74 0.23 -1.87 16 23 C -0.13 -1.58 7.98 31.28 0.25 -1.33 16 24 C -0.12 -1.45 7.42 30.74 0.23 -1.22 16 25 C 0.06 1.25 6.95 72.21 0.50 1.75 16 26 O -0.40 -12.00 10.39 -145.86 -1.52 -13.52 16 27 H 0.06 2.16 6.65 -2.38 -0.02 2.14 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 30 H 0.10 3.12 6.87 -2.38 -0.02 3.11 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.79 6.69 -2.39 -0.02 1.77 16 34 H 0.02 1.24 6.45 -2.39 -0.02 1.22 16 35 H 0.01 0.81 6.82 -2.39 -0.02 0.79 16 36 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.16 4.85 8.14 -2.39 -0.02 4.83 16 38 H 0.15 4.15 8.14 -2.39 -0.02 4.13 16 39 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.09 1.80 7.47 -2.39 -0.02 1.78 16 41 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 42 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.11 1.90 8.07 -2.39 -0.02 1.89 16 Total: -1.00 -70.59 385.64 0.33 -70.26 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.92 Total: 25.65 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.33 Total: -39.76 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -1.04 Total: -96.63 kcal Atomic # 8 Polarization: -104.65 SS G_CDS: -5.62 Total: -110.27 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 108.10 SS G_CDS: -0.30 Total: 107.80 kcal Total: -70.59 0.33 -70.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413295437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.288 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds