Wall clock time and date at job start Tue Mar 31 2020 17:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.48297 * 2 1 4 4 C 1.53232 * 109.49555 * 120.02967 * 2 1 3 5 5 C 1.51270 * 108.53121 * 65.36496 * 4 2 1 6 6 O 1.20766 * 120.84719 * 231.36909 * 5 4 2 7 7 C 1.51264 * 118.30659 * 51.34938 * 5 4 2 8 8 C 1.53232 * 108.53399 * 308.64985 * 7 5 4 9 9 C 1.52959 * 109.48624 * 239.97228 * 2 1 3 10 10 H 1.08993 * 109.41684 * 183.56576 * 9 2 1 11 11 C 1.50705 * 109.41107 * 63.70762 * 9 2 1 12 12 O 1.21279 * 119.99766 * 0.02562 * 11 9 2 13 13 N 1.34774 * 119.99836 * 180.02562 * 11 9 2 14 14 C 1.46501 * 120.00127 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47191 * 179.97438 * 14 13 11 16 16 C 1.38305 * 119.92884 * 270.27414 * 15 14 13 17 17 C 1.38104 * 120.06272 * 180.23165 * 16 15 14 18 18 C 1.38874 * 119.93261 * 359.47791 * 17 16 15 19 19 O 1.35748 * 120.06919 * 180.25382 * 18 17 16 20 20 C 1.34830 * 117.00158 * 354.45958 * 19 18 17 21 21 H 1.08005 * 119.99657 * 5.05386 * 20 19 18 22 22 C 1.38652 * 120.00222 * 185.06116 * 20 19 18 23 23 N 1.31559 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00107 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47288 * 89.99329 * 24 22 20 26 26 H 1.48495 * 109.47418 * 209.99891 * 24 22 20 27 27 H 1.48508 * 109.46909 * 329.99556 * 24 22 20 28 28 C 1.38882 * 119.86307 * 0.26829 * 18 17 16 29 29 C 1.38102 * 119.92770 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47455 * 300.02613 * 1 2 3 32 32 H 1.09003 * 109.47348 * 60.03086 * 1 2 3 33 33 H 1.09002 * 109.62682 * 185.07055 * 4 2 1 34 34 H 1.08999 * 109.62964 * 305.64877 * 4 2 1 35 35 H 1.08998 * 109.62556 * 68.36254 * 7 5 4 36 36 H 1.08996 * 109.62928 * 188.74684 * 7 5 4 37 37 H 1.09000 * 109.48545 * 294.65089 * 8 7 5 38 38 H 1.08999 * 109.48347 * 174.60683 * 8 7 5 39 39 H 0.97003 * 119.99899 * 359.97438 * 13 11 9 40 40 H 1.09002 * 109.47112 * 59.99878 * 14 13 11 41 41 H 1.09000 * 109.46946 * 300.00022 * 14 13 11 42 42 H 1.07999 * 119.96556 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.03238 * 179.74272 * 17 16 15 44 44 H 0.96996 * 119.99996 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.03759 * 180.02562 * 28 18 17 46 46 H 1.08006 * 119.96319 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0414 -0.7229 1.2506 5 6 1.6382 -2.1783 1.1632 6 8 1.0648 -2.7180 2.0789 7 6 1.9712 -2.9402 -0.1004 8 6 1.4624 -2.1369 -1.3019 9 6 2.0402 -0.7216 -1.2484 10 1 3.1283 -0.7766 -1.2159 11 6 1.6137 0.0403 -2.4768 12 8 0.9663 1.0596 -2.3637 13 7 1.9518 -0.4110 -3.7009 14 6 1.5378 0.3299 -4.8949 15 6 2.0397 -0.3801 -6.1258 16 6 3.2853 -0.0705 -6.6412 17 6 3.7460 -0.7160 -7.7719 18 6 2.9619 -1.6844 -8.3850 19 8 3.4142 -2.3242 -9.4935 20 6 4.5806 -1.8941 -10.0155 21 1 5.1509 -1.1309 -9.5069 22 6 5.0478 -2.4314 -11.2052 23 7 4.3532 -3.3614 -11.8245 24 14 6.6634 -1.8350 -11.9287 25 1 7.7771 -2.6656 -11.4045 26 1 6.6150 -1.9486 -13.4085 27 1 6.8823 -0.4163 -11.5482 28 6 1.7138 -1.9967 -7.8619 29 6 1.2561 -1.3433 -6.7346 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 3.1276 -0.6462 1.2993 34 1 1.5995 -0.2733 2.1398 35 1 3.0509 -3.0687 -0.1766 36 1 1.4870 -3.9164 -0.0776 37 1 0.3740 -2.0865 -1.2710 38 1 1.7779 -2.6237 -2.2247 39 1 2.4700 -1.2261 -3.7912 40 1 1.9550 1.3363 -4.8609 41 1 0.4498 0.3884 -4.9271 42 1 3.8967 0.6790 -6.1610 43 1 4.7170 -0.4709 -8.1764 44 1 4.6802 -3.7375 -12.6567 45 1 1.1018 -2.7496 -8.3362 46 1 0.2854 -1.5854 -6.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417631787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:13 Heat of formation + Delta-G solvation = -95.168921 kcal Electronic energy + Delta-G solvation = -27425.230957 eV Core-core repulsion = 23472.813689 eV Total energy + Delta-G solvation = -3952.417268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01839 -39.58011 -39.08426 -37.16662 -36.57625 -34.59922 -32.54905 -32.31417 -30.54463 -30.30847 -29.31967 -27.58937 -25.87685 -24.71888 -23.51899 -22.11984 -22.02698 -20.70428 -20.36483 -18.81690 -18.12700 -17.58460 -17.01934 -16.52834 -15.93399 -15.63222 -15.55424 -15.05140 -14.82221 -14.64659 -14.55182 -14.26050 -13.98127 -13.91528 -13.70166 -13.48039 -13.18876 -12.87251 -12.84293 -12.67472 -12.28284 -12.16587 -11.98461 -11.94593 -11.73033 -11.46504 -11.32673 -11.18390 -11.00013 -10.88953 -10.83004 -10.75369 -10.52652 -9.77984 -9.72777 -9.47702 -9.02719 -8.95160 -8.34492 -7.38072 -6.57212 -4.16276 1.59775 2.00727 2.07224 2.53655 3.04175 3.06432 3.11324 3.26749 3.72017 3.86578 4.11435 4.25415 4.36498 4.48660 4.55729 4.73506 4.82472 4.86311 4.96808 4.97271 5.08553 5.14585 5.21324 5.23425 5.32916 5.36146 5.42627 5.44409 5.60095 5.62497 5.68272 5.74347 5.78122 5.87033 5.96597 6.06771 6.15955 6.29188 6.45307 6.54501 6.74674 6.90317 7.08559 7.12942 7.21351 7.30118 7.50758 7.66184 7.87254 8.16989 8.88051 9.55671 10.60181 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.002044 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.616909 B =13695.317122 C =14036.688045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 H 0.091 0.909 4 C -0.167 4.167 5 C 0.363 3.637 6 O -0.460 6.460 7 C -0.169 4.169 8 C -0.110 4.110 9 C -0.110 4.110 10 H 0.103 0.897 11 C 0.515 3.485 12 O -0.541 6.541 13 N -0.720 5.720 14 C 0.179 3.821 15 C -0.216 4.216 16 C -0.051 4.051 17 C -0.237 4.237 18 C 0.160 3.840 19 O -0.173 6.173 20 C -0.394 4.394 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.195 4.195 29 C -0.054 4.054 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.272 0.728 45 H 0.118 0.882 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 4.080 20.343 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.081 4.081 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.238 3.762 6 O -0.333 6.333 7 C -0.207 4.207 8 C -0.148 4.148 9 C -0.132 4.132 10 H 0.121 0.879 11 C 0.301 3.699 12 O -0.418 6.418 13 N -0.371 5.371 14 C 0.057 3.943 15 C -0.217 4.217 16 C -0.070 4.070 17 C -0.256 4.256 18 C 0.105 3.895 19 O -0.075 6.075 20 C -0.470 4.470 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.214 4.214 29 C -0.073 4.073 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.024 4.201 20.515 21.157 hybrid contribution 1.280 -0.090 -0.604 1.418 sum -1.744 4.111 19.910 20.405 Atomic orbital electron populations 1.22116 0.94262 1.01688 1.03776 1.20839 0.97071 0.99644 0.90589 0.89076 1.22435 1.03335 0.94313 1.00425 1.24896 0.73961 0.90385 0.86913 1.90420 1.31473 1.71644 1.39748 1.22312 1.04021 1.00230 0.94101 1.21590 1.02106 0.92957 0.98122 1.21453 1.02483 0.95601 0.93636 0.87887 1.20446 0.79645 0.85314 0.84504 1.90659 1.39428 1.25128 1.86629 1.46395 1.56252 1.28923 1.05576 1.19983 0.99058 0.94171 0.81136 1.19200 0.97493 1.04640 1.00403 1.20638 0.94307 0.97321 0.94691 1.21160 1.02432 1.02441 0.99598 1.19442 0.92122 0.90117 0.87779 1.83977 1.37748 1.50927 1.34853 1.21355 0.96227 1.23179 1.06228 0.88906 1.25326 0.99700 0.96067 0.95375 1.70033 1.37749 1.24722 1.16757 0.85692 0.79985 0.79194 0.78468 1.19786 1.20156 1.19117 1.20218 0.95637 1.05696 0.99897 1.20524 0.98067 0.94476 0.94252 0.93238 0.92629 0.89696 0.88209 0.88962 0.87960 0.88863 0.90219 0.89813 0.76393 0.91583 0.91537 0.87431 0.85429 0.91834 0.86384 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.31 37.16 0.31 -1.15 16 2 C -0.06 -0.47 2.33 -90.52 -0.21 -0.68 16 3 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 4 C -0.17 -1.08 5.65 -27.48 -0.16 -1.23 16 5 C 0.36 2.99 5.75 -28.48 -0.16 2.83 16 6 O -0.46 -5.54 17.89 5.99 0.11 -5.44 16 7 C -0.17 -1.02 6.17 -27.49 -0.17 -1.19 16 8 C -0.11 -0.71 4.88 -26.63 -0.13 -0.84 16 9 C -0.11 -0.79 2.20 -91.81 -0.20 -1.00 16 10 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 11 C 0.52 5.42 6.87 -10.98 -0.08 5.34 16 12 O -0.54 -7.51 13.88 5.56 0.08 -7.43 16 13 N -0.72 -7.49 5.42 -61.47 -0.33 -7.82 16 14 C 0.18 2.24 5.79 -5.19 -0.03 2.21 16 15 C -0.22 -3.20 5.25 -104.58 -0.55 -3.75 16 16 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 17 C -0.24 -4.70 9.17 -39.40 -0.36 -5.06 16 18 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 19 O -0.17 -4.67 9.76 0.06 0.00 -4.67 16 20 C -0.39 -10.47 9.49 30.89 0.29 -10.18 16 21 H 0.09 2.27 5.20 -52.48 -0.27 1.99 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.25 13.67 55.48 0.76 -23.49 16 24 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.20 -3.76 9.99 -39.39 -0.39 -4.16 16 29 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 30 H 0.05 0.44 5.61 -51.93 -0.29 0.15 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.94 5.83 -51.93 -0.30 0.64 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.59 6.20 -51.93 -0.32 0.27 16 38 H 0.08 0.47 7.43 -51.93 -0.39 0.08 16 39 H 0.40 3.60 7.81 -40.82 -0.32 3.28 16 40 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.13 2.56 5.64 -52.49 -0.30 2.26 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 46 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -31.77 374.07 -8.12 -39.89 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.38 Total: 5.72 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.96 Total: -17.00 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.43 Total: -31.31 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.54 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.77 -8.12 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.280 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds