Wall clock time and date at job start Tue Mar 31 2020 17:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.48297 * 2 1 4 4 C 1.53232 * 109.49555 * 120.02967 * 2 1 3 5 5 C 1.51270 * 108.53121 * 65.36496 * 4 2 1 6 6 O 1.20766 * 120.84719 * 231.36909 * 5 4 2 7 7 C 1.51264 * 118.30659 * 51.34938 * 5 4 2 8 8 C 1.53232 * 108.53399 * 308.64985 * 7 5 4 9 9 C 1.52959 * 109.48624 * 239.97228 * 2 1 3 10 10 H 1.08993 * 109.41684 * 183.56576 * 9 2 1 11 11 C 1.50705 * 109.41107 * 63.70762 * 9 2 1 12 12 O 1.21279 * 119.99766 * 0.02562 * 11 9 2 13 13 N 1.34774 * 119.99836 * 180.02562 * 11 9 2 14 14 C 1.46501 * 120.00127 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47191 * 179.97438 * 14 13 11 16 16 C 1.38305 * 119.92884 * 270.27414 * 15 14 13 17 17 C 1.38104 * 120.06272 * 180.23165 * 16 15 14 18 18 C 1.38874 * 119.93261 * 359.47791 * 17 16 15 19 19 O 1.35748 * 120.06919 * 180.25382 * 18 17 16 20 20 C 1.34830 * 117.00158 * 354.45958 * 19 18 17 21 21 H 1.08005 * 119.99657 * 5.05386 * 20 19 18 22 22 C 1.38652 * 120.00222 * 185.06116 * 20 19 18 23 23 N 1.31559 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00107 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47288 * 89.99329 * 24 22 20 26 26 H 1.48495 * 109.47418 * 209.99891 * 24 22 20 27 27 H 1.48508 * 109.46909 * 329.99556 * 24 22 20 28 28 C 1.38882 * 119.86307 * 0.26829 * 18 17 16 29 29 C 1.38102 * 119.92770 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47455 * 300.02613 * 1 2 3 32 32 H 1.09003 * 109.47348 * 60.03086 * 1 2 3 33 33 H 1.09002 * 109.62682 * 185.07055 * 4 2 1 34 34 H 1.08999 * 109.62964 * 305.64877 * 4 2 1 35 35 H 1.08998 * 109.62556 * 68.36254 * 7 5 4 36 36 H 1.08996 * 109.62928 * 188.74684 * 7 5 4 37 37 H 1.09000 * 109.48545 * 294.65089 * 8 7 5 38 38 H 1.08999 * 109.48347 * 174.60683 * 8 7 5 39 39 H 0.97003 * 119.99899 * 359.97438 * 13 11 9 40 40 H 1.09002 * 109.47112 * 59.99878 * 14 13 11 41 41 H 1.09000 * 109.46946 * 300.00022 * 14 13 11 42 42 H 1.07999 * 119.96556 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.03238 * 179.74272 * 17 16 15 44 44 H 0.96996 * 119.99996 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.03759 * 180.02562 * 28 18 17 46 46 H 1.08006 * 119.96319 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0414 -0.7229 1.2506 5 6 1.6382 -2.1783 1.1632 6 8 1.0648 -2.7180 2.0789 7 6 1.9712 -2.9402 -0.1004 8 6 1.4624 -2.1369 -1.3019 9 6 2.0402 -0.7216 -1.2484 10 1 3.1283 -0.7766 -1.2159 11 6 1.6137 0.0403 -2.4768 12 8 0.9663 1.0596 -2.3637 13 7 1.9518 -0.4110 -3.7009 14 6 1.5378 0.3299 -4.8949 15 6 2.0397 -0.3801 -6.1258 16 6 3.2853 -0.0705 -6.6412 17 6 3.7460 -0.7160 -7.7719 18 6 2.9619 -1.6844 -8.3850 19 8 3.4142 -2.3242 -9.4935 20 6 4.5806 -1.8941 -10.0155 21 1 5.1509 -1.1309 -9.5069 22 6 5.0478 -2.4314 -11.2052 23 7 4.3532 -3.3614 -11.8245 24 14 6.6634 -1.8350 -11.9287 25 1 7.7771 -2.6656 -11.4045 26 1 6.6150 -1.9486 -13.4085 27 1 6.8823 -0.4163 -11.5482 28 6 1.7138 -1.9967 -7.8619 29 6 1.2561 -1.3433 -6.7346 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 3.1276 -0.6462 1.2993 34 1 1.5995 -0.2733 2.1398 35 1 3.0509 -3.0687 -0.1766 36 1 1.4870 -3.9164 -0.0776 37 1 0.3740 -2.0865 -1.2710 38 1 1.7779 -2.6237 -2.2247 39 1 2.4700 -1.2261 -3.7912 40 1 1.9550 1.3363 -4.8609 41 1 0.4498 0.3884 -4.9271 42 1 3.8967 0.6790 -6.1610 43 1 4.7170 -0.4709 -8.1764 44 1 4.6802 -3.7375 -12.6567 45 1 1.1018 -2.7496 -8.3362 46 1 0.2854 -1.5854 -6.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417631787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:12 Heat of formation + Delta-G solvation = -115.108982 kcal Electronic energy + Delta-G solvation = -27426.095623 eV Core-core repulsion = 23472.813689 eV Total energy + Delta-G solvation = -3953.281934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73343 -40.84226 -40.21874 -38.55759 -37.46429 -35.66979 -34.27564 -33.04011 -31.83112 -31.58545 -30.19405 -28.34625 -27.54391 -26.05198 -24.07839 -23.62562 -22.82515 -22.07632 -21.15346 -19.86562 -19.44834 -18.86163 -18.22306 -17.28155 -16.80703 -16.59047 -16.33343 -16.27050 -16.13862 -15.78153 -15.59101 -15.49620 -15.27733 -15.01263 -14.71184 -14.56085 -14.37390 -14.22302 -13.78171 -13.59482 -13.43309 -13.16642 -13.01017 -12.87596 -12.61565 -12.56896 -12.53856 -12.33681 -12.22786 -12.11328 -12.00131 -11.75820 -11.44963 -11.18271 -10.84066 -10.60590 -10.35987 -9.96493 -9.78541 -8.98261 -8.47361 -6.15427 0.57300 0.59900 0.97851 1.36820 1.44973 1.53740 1.72631 2.17818 2.33861 2.87275 3.15915 3.19486 3.51214 3.52971 3.68897 3.78915 3.92842 3.99683 4.05836 4.19677 4.22457 4.27139 4.28287 4.43232 4.49191 4.56299 4.59139 4.71232 4.78699 4.81060 4.83649 4.88183 4.91996 5.06717 5.09359 5.14875 5.16050 5.18880 5.28975 5.35296 5.41251 5.53954 5.57883 5.71361 5.77554 6.02763 6.18610 6.52733 6.67587 6.97723 7.35109 7.77491 8.75453 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.002044 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.616909 B =13695.317122 C =14036.688045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.059 4.059 3 H 0.089 0.911 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.506 6.506 7 C -0.164 4.164 8 C -0.106 4.106 9 C -0.103 4.103 10 H 0.136 0.864 11 C 0.517 3.483 12 O -0.575 6.575 13 N -0.715 5.715 14 C 0.184 3.816 15 C -0.180 4.180 16 C -0.045 4.045 17 C -0.244 4.244 18 C 0.121 3.879 19 O -0.230 6.230 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.919 5.919 24 Si 1.017 2.983 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.253 1.253 28 C -0.205 4.205 29 C -0.044 4.044 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.412 0.588 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.140 0.860 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.113 0.887 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 5.492 22.738 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.078 4.078 3 H 0.107 0.893 4 C -0.199 4.199 5 C 0.242 3.758 6 O -0.383 6.383 7 C -0.201 4.201 8 C -0.144 4.144 9 C -0.124 4.124 10 H 0.153 0.847 11 C 0.304 3.696 12 O -0.454 6.454 13 N -0.366 5.366 14 C 0.061 3.939 15 C -0.181 4.181 16 C -0.063 4.063 17 C -0.263 4.263 18 C 0.070 3.930 19 O -0.136 6.136 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.837 3.163 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.176 1.176 28 C -0.224 4.224 29 C -0.062 4.062 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.824 5.633 22.962 23.714 hybrid contribution 0.655 -0.368 -0.998 1.249 sum -1.170 5.265 21.964 22.617 Atomic orbital electron populations 1.22078 0.95796 1.01154 1.02695 1.20793 0.95748 0.99851 0.91392 0.89257 1.22423 1.05114 0.92804 0.99529 1.25413 0.72328 0.91186 0.86884 1.90418 1.33642 1.72676 1.41521 1.22322 1.05785 0.99541 0.92479 1.21566 1.01283 0.92588 0.98942 1.21479 1.04325 0.95154 0.91407 0.84676 1.20952 0.78669 0.84891 0.85074 1.90666 1.40872 1.26847 1.87061 1.46200 1.56371 1.29122 1.04948 1.19848 0.99254 0.94146 0.80635 1.19510 0.96145 1.02383 1.00092 1.20945 0.95057 0.97091 0.93255 1.21249 1.02037 1.02297 1.00692 1.20005 0.93799 0.91595 0.87580 1.83948 1.38713 1.53533 1.37426 1.21823 0.96653 1.23541 1.06787 0.87852 1.26575 1.03673 0.96168 0.95620 1.70179 1.40422 1.27345 1.17787 0.84601 0.75070 0.79270 0.77401 1.18724 1.19887 1.17618 1.20448 0.94792 1.06170 1.01031 1.20871 0.99326 0.93447 0.92593 0.93499 0.92673 0.91773 0.85169 0.89453 0.85037 0.89213 0.91654 0.88322 0.75172 0.91203 0.91207 0.84193 0.86267 0.91849 0.86894 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.31 71.98 0.60 -2.10 16 2 C -0.06 -0.73 2.33 -10.73 -0.02 -0.75 16 3 H 0.09 1.20 8.00 -2.38 -0.02 1.18 16 4 C -0.16 -1.61 5.65 30.11 0.17 -1.44 16 5 C 0.36 5.18 5.75 29.46 0.17 5.35 16 6 O -0.51 -11.78 17.89 -1.47 -0.03 -11.80 16 7 C -0.16 -1.44 6.17 30.11 0.19 -1.25 16 8 C -0.11 -0.99 4.88 30.66 0.15 -0.84 16 9 C -0.10 -1.07 2.20 -11.56 -0.03 -1.10 16 10 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 11 C 0.52 9.02 6.87 87.66 0.60 9.63 16 12 O -0.57 -14.50 13.88 -3.03 -0.04 -14.55 16 13 N -0.71 -11.77 5.42 -466.78 -2.53 -14.29 16 14 C 0.18 3.83 5.79 85.63 0.50 4.33 16 15 C -0.18 -4.66 5.25 -19.84 -0.10 -4.76 16 16 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 17 C -0.24 -9.52 9.17 22.39 0.21 -9.31 16 18 C 0.12 5.56 6.65 22.58 0.15 5.71 16 19 O -0.23 -13.16 9.76 -22.72 -0.22 -13.38 16 20 C -0.41 -22.89 9.49 67.92 0.64 -22.24 16 21 H 0.10 5.21 5.20 -2.91 -0.02 5.20 16 22 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 23 N -0.92 -54.83 13.67 21.61 0.30 -54.53 16 24 Si 1.02 41.15 29.55 68.60 2.03 43.18 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 28 C -0.21 -7.87 9.99 22.39 0.22 -7.65 16 29 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 30 H 0.05 0.79 5.61 -2.39 -0.01 0.78 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.37 5.83 -2.39 -0.01 1.36 16 33 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.82 6.20 -2.39 -0.01 0.81 16 38 H 0.10 0.67 7.43 -2.39 -0.02 0.65 16 39 H 0.41 5.35 7.81 -92.71 -0.72 4.63 16 40 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.12 4.80 5.64 -2.91 -0.02 4.79 16 44 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 45 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -75.42 374.07 4.13 -71.29 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.29 Total: 23.46 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.34 Total: -29.37 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -2.23 Total: -68.83 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.29 Total: -39.73 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -75.42 4.13 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.823 kcal (2) G-P(sol) polarization free energy of solvation -75.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds