Wall clock time and date at job start Tue Mar 31 2020 17:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49277 * 2 1 4 4 C 1.53232 * 109.48305 * 120.03828 * 2 1 3 5 5 C 1.51265 * 108.53661 * 174.60228 * 4 2 1 6 6 O 1.20761 * 120.84828 * 128.66942 * 5 4 2 7 7 C 1.51268 * 118.30341 * 308.65331 * 5 4 2 8 8 C 1.53237 * 108.53676 * 51.34711 * 7 5 4 9 9 C 1.52959 * 109.48001 * 239.96764 * 2 1 3 10 10 H 1.09005 * 109.35608 * 296.49111 * 9 2 1 11 11 C 1.50696 * 109.41510 * 56.31399 * 9 2 1 12 12 O 1.21283 * 119.99852 * 36.78479 * 11 9 2 13 13 N 1.34774 * 120.00531 * 216.78531 * 11 9 2 14 14 C 1.46496 * 120.00639 * 180.02562 * 13 11 9 15 15 C 1.50692 * 109.47625 * 179.97438 * 14 13 11 16 16 C 1.38312 * 119.92871 * 89.99918 * 15 14 13 17 17 C 1.38099 * 120.06571 * 180.02562 * 16 15 14 18 18 C 1.38870 * 119.93349 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.07055 * 179.97438 * 18 17 16 20 20 C 1.34837 * 117.00035 * 4.25777 * 19 18 17 21 21 H 1.08000 * 119.99332 * 354.85143 * 20 19 18 22 22 C 1.38654 * 119.99971 * 174.84205 * 20 19 18 23 23 N 1.31551 * 120.00014 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99575 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47099 * 270.00085 * 24 22 20 26 26 H 1.48499 * 109.46951 * 30.00155 * 24 22 20 27 27 H 1.48492 * 109.46934 * 150.00416 * 24 22 20 28 28 C 1.38884 * 119.86503 * 0.24852 * 18 17 16 29 29 C 1.38096 * 119.92576 * 359.49495 * 28 18 17 30 30 H 1.08999 * 109.46746 * 174.48735 * 1 2 3 31 31 H 1.09000 * 109.46405 * 294.48414 * 1 2 3 32 32 H 1.08992 * 109.47262 * 54.48232 * 1 2 3 33 33 H 1.08998 * 109.62565 * 54.88748 * 4 2 1 34 34 H 1.08994 * 109.78111 * 294.41292 * 4 2 1 35 35 H 1.08995 * 109.62275 * 291.63154 * 7 5 4 36 36 H 1.08996 * 109.78566 * 171.15084 * 7 5 4 37 37 H 1.08991 * 109.48058 * 185.39763 * 8 7 5 38 38 H 1.08992 * 109.47972 * 65.34977 * 8 7 5 39 39 H 0.97008 * 119.99797 * 359.97438 * 13 11 9 40 40 H 1.09010 * 109.47350 * 59.99516 * 14 13 11 41 41 H 1.09005 * 109.46736 * 300.00291 * 14 13 11 42 42 H 1.07994 * 119.96277 * 0.04729 * 16 15 14 43 43 H 1.08004 * 120.02708 * 180.02562 * 17 16 15 44 44 H 0.96994 * 120.00302 * 0.02562 * 23 22 20 45 45 H 1.07997 * 120.03627 * 179.73107 * 28 18 17 46 46 H 1.07998 * 119.96582 * 180.27387 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7231 1.2506 5 6 3.5476 -0.8285 1.1632 6 8 4.2476 -0.4685 2.0791 7 6 4.1548 -1.3965 -0.1004 8 6 3.5671 -0.6490 -1.3020 9 6 2.0401 -0.7217 -1.2484 10 1 1.7281 -1.7656 -1.2151 11 6 1.4640 -0.0658 -2.4768 12 8 1.3148 1.1374 -2.5082 13 7 1.1146 -0.8161 -3.5404 14 6 0.5550 -0.1785 -4.7347 15 6 0.2517 -1.2302 -5.7704 16 6 -0.9910 -1.8369 -5.7943 17 6 -1.2719 -2.8015 -6.7419 18 6 -0.3049 -3.1624 -7.6710 19 8 -0.5778 -4.1106 -8.6034 20 6 -1.8341 -4.5997 -8.6295 21 1 -2.5470 -4.2973 -7.8767 22 6 -2.2107 -5.4906 -9.6230 23 7 -1.3421 -5.8590 -10.5398 24 14 -3.9514 -6.1676 -9.6596 25 1 -4.0131 -7.4177 -8.8605 26 1 -4.8843 -5.1657 -9.0842 27 1 -4.3403 -6.4575 -11.0630 28 6 0.9439 -2.5554 -7.6408 29 6 1.2168 -1.5878 -6.6941 30 1 -0.3633 -1.0229 -0.0987 31 1 -0.3632 0.4259 0.9353 32 1 -0.3633 0.5970 -0.8364 33 1 1.6065 -1.7215 1.2994 34 1 1.7645 -0.1595 2.1415 35 1 3.9159 -2.4572 -0.1766 36 1 5.2366 -1.2654 -0.0812 37 1 3.9207 -1.1089 -2.2247 38 1 3.8826 0.3938 -1.2711 39 1 1.2342 -1.7785 -3.5154 40 1 1.2763 0.5319 -5.1391 41 1 -0.3628 0.3467 -4.4699 42 1 -1.7425 -1.5558 -5.0715 43 1 -2.2426 -3.2745 -6.7603 44 1 -0.4382 -5.5078 -10.5206 45 1 1.6994 -2.8371 -8.3593 46 1 2.1862 -1.1122 -6.6729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417631788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:17 Heat of formation + Delta-G solvation = -106.758086 kcal Electronic energy + Delta-G solvation = -27325.781215 eV Core-core repulsion = 23372.861404 eV Total energy + Delta-G solvation = -3952.919812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89302 -39.62608 -39.18007 -37.25685 -36.59905 -34.55803 -33.02017 -32.42395 -30.59894 -30.39024 -29.36229 -27.41369 -25.69724 -24.70630 -23.22707 -22.10901 -21.83886 -20.81742 -20.29675 -19.61646 -18.53310 -17.62845 -16.93827 -16.30776 -16.02417 -15.75666 -15.58731 -15.23829 -15.02478 -14.74695 -14.36834 -14.22863 -13.96965 -13.87114 -13.62093 -13.49475 -13.31273 -13.05423 -12.79849 -12.74346 -12.64449 -12.41784 -12.15293 -11.92469 -11.48624 -11.38354 -11.24078 -11.21499 -11.04614 -10.96842 -10.87928 -10.42948 -10.39124 -9.86358 -9.80321 -9.55417 -9.08641 -8.89670 -8.42243 -7.46709 -6.90348 -4.20044 1.54331 1.93390 1.99219 2.50362 3.16039 3.17582 3.25540 3.35654 3.66724 4.00451 4.08867 4.19973 4.30407 4.44968 4.49107 4.73324 4.79314 4.86833 4.91321 4.93854 5.03884 5.06688 5.12545 5.16739 5.24406 5.29564 5.35622 5.41666 5.52488 5.55231 5.61496 5.67245 5.72442 5.81540 5.87759 5.94726 5.99003 6.21362 6.38664 6.45540 6.65465 6.86887 7.05974 7.08105 7.14574 7.42179 7.47213 7.55133 8.13685 8.25881 8.77144 9.44476 10.53340 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002027 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.375423 B =13807.457559 C =13914.490115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.362 3.638 6 O -0.459 6.459 7 C -0.168 4.168 8 C -0.102 4.102 9 C -0.109 4.109 10 H 0.095 0.905 11 C 0.517 3.483 12 O -0.543 6.543 13 N -0.720 5.720 14 C 0.178 3.822 15 C -0.214 4.214 16 C -0.050 4.050 17 C -0.233 4.233 18 C 0.163 3.837 19 O -0.197 6.197 20 C -0.473 4.473 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.876 5.876 24 Si 1.099 2.901 25 H -0.280 1.280 26 H -0.282 1.282 27 H -0.275 1.275 28 C -0.198 4.198 29 C -0.054 4.054 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.283 0.717 45 H 0.117 0.883 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 7.422 18.972 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.106 0.894 4 C -0.203 4.203 5 C 0.237 3.763 6 O -0.332 6.332 7 C -0.206 4.206 8 C -0.140 4.140 9 C -0.130 4.130 10 H 0.114 0.886 11 C 0.303 3.697 12 O -0.421 6.421 13 N -0.371 5.371 14 C 0.056 3.944 15 C -0.215 4.215 16 C -0.069 4.069 17 C -0.252 4.252 18 C 0.109 3.891 19 O -0.101 6.101 20 C -0.549 4.549 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.507 5.507 24 Si 0.922 3.078 25 H -0.206 1.206 26 H -0.207 1.207 27 H -0.199 1.199 28 C -0.217 4.217 29 C -0.073 4.073 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.917 7.333 18.342 20.356 hybrid contribution 0.917 0.460 0.770 1.283 sum 5.834 7.793 19.112 21.448 Atomic orbital electron populations 1.21896 0.93813 1.02329 1.02907 1.20928 0.96794 1.00043 0.90839 0.89437 1.22420 0.94135 1.03562 1.00163 1.24917 0.91643 0.72785 0.86928 1.90422 1.65404 1.37639 1.39705 1.22315 1.02270 1.01974 0.94043 1.21429 0.92508 1.02052 0.98049 1.21470 0.96556 1.01402 0.93589 0.88627 1.20422 0.77776 0.87452 0.84042 1.90697 1.54527 1.14509 1.82362 1.46429 1.64067 1.11193 1.15437 1.19981 0.98256 0.93302 0.82870 1.19219 0.96007 1.04662 1.01618 1.20658 0.95249 0.94413 0.96594 1.21175 1.01289 1.03478 0.99291 1.19291 0.93229 0.87712 0.88914 1.83669 1.32455 1.45977 1.47950 1.22281 0.86125 1.29566 1.16908 0.89643 1.26594 1.07197 0.94425 0.91258 1.70546 1.06796 1.40872 1.32521 0.83052 0.71165 0.76253 0.77291 1.20595 1.20732 1.19946 1.20194 0.96241 1.01834 1.03458 1.20518 0.97629 0.95494 0.93626 0.92392 0.92090 0.91412 0.88063 0.88898 0.87944 0.88839 0.89871 0.90434 0.76385 0.91530 0.91524 0.87297 0.85289 0.90671 0.86533 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.76 37.16 0.33 -0.83 16 2 C -0.07 -0.50 1.96 -90.52 -0.18 -0.68 16 3 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 4 C -0.17 -1.04 5.45 -27.49 -0.15 -1.19 16 5 C 0.36 2.93 6.72 -28.48 -0.19 2.74 16 6 O -0.46 -5.46 17.89 6.00 0.11 -5.36 16 7 C -0.17 -0.99 6.17 -27.48 -0.17 -1.16 16 8 C -0.10 -0.68 5.20 -26.63 -0.14 -0.82 16 9 C -0.11 -0.79 1.99 -91.82 -0.18 -0.98 16 10 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 11 C 0.52 5.53 5.77 -10.99 -0.06 5.46 16 12 O -0.54 -7.82 15.64 5.56 0.09 -7.74 16 13 N -0.72 -7.55 5.55 -61.47 -0.34 -7.89 16 14 C 0.18 2.24 5.79 -5.20 -0.03 2.21 16 15 C -0.21 -3.17 5.25 -104.58 -0.55 -3.72 16 16 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 17 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 18 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 19 O -0.20 -5.26 9.16 0.03 0.00 -5.26 16 20 C -0.47 -12.68 9.49 30.89 0.29 -12.39 16 21 H 0.09 2.14 5.20 -52.49 -0.27 1.87 16 22 C 0.01 0.30 5.49 -17.52 -0.10 0.21 16 23 N -0.88 -25.22 13.70 55.48 0.76 -24.46 16 24 Si 1.10 22.70 29.92 -169.99 -5.09 17.61 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 28 C -0.20 -3.78 9.99 -39.39 -0.39 -4.17 16 29 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.67 6.79 -51.93 -0.35 0.32 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 3.62 8.42 -40.82 -0.34 3.27 16 40 H 0.07 0.86 8.08 -51.92 -0.42 0.44 16 41 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.13 2.66 5.63 -52.48 -0.30 2.36 16 44 H 0.28 8.32 7.97 -40.82 -0.33 8.00 16 45 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 46 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -32.17 381.97 -8.34 -40.51 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.71 Total: 6.23 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.91 Total: -19.39 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.42 Total: -32.36 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.19 Total: -18.35 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.09 Total: 17.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.17 -8.34 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.251 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds