Wall clock time and date at job start Tue Mar 31 2020 17:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49277 * 2 1 4 4 C 1.53232 * 109.48305 * 120.03828 * 2 1 3 5 5 C 1.51265 * 108.53661 * 174.60228 * 4 2 1 6 6 O 1.20761 * 120.84828 * 128.66942 * 5 4 2 7 7 C 1.51268 * 118.30341 * 308.65331 * 5 4 2 8 8 C 1.53237 * 108.53676 * 51.34711 * 7 5 4 9 9 C 1.52959 * 109.48001 * 239.96764 * 2 1 3 10 10 H 1.09005 * 109.35608 * 296.49111 * 9 2 1 11 11 C 1.50696 * 109.41510 * 56.31399 * 9 2 1 12 12 O 1.21283 * 119.99852 * 36.78479 * 11 9 2 13 13 N 1.34774 * 120.00531 * 216.78531 * 11 9 2 14 14 C 1.46496 * 120.00639 * 180.02562 * 13 11 9 15 15 C 1.50692 * 109.47625 * 179.97438 * 14 13 11 16 16 C 1.38312 * 119.92871 * 89.99918 * 15 14 13 17 17 C 1.38099 * 120.06571 * 180.02562 * 16 15 14 18 18 C 1.38870 * 119.93349 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.07055 * 179.97438 * 18 17 16 20 20 C 1.34837 * 117.00035 * 4.25777 * 19 18 17 21 21 H 1.08000 * 119.99332 * 354.85143 * 20 19 18 22 22 C 1.38654 * 119.99971 * 174.84205 * 20 19 18 23 23 N 1.31551 * 120.00014 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99575 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47099 * 270.00085 * 24 22 20 26 26 H 1.48499 * 109.46951 * 30.00155 * 24 22 20 27 27 H 1.48492 * 109.46934 * 150.00416 * 24 22 20 28 28 C 1.38884 * 119.86503 * 0.24852 * 18 17 16 29 29 C 1.38096 * 119.92576 * 359.49495 * 28 18 17 30 30 H 1.08999 * 109.46746 * 174.48735 * 1 2 3 31 31 H 1.09000 * 109.46405 * 294.48414 * 1 2 3 32 32 H 1.08992 * 109.47262 * 54.48232 * 1 2 3 33 33 H 1.08998 * 109.62565 * 54.88748 * 4 2 1 34 34 H 1.08994 * 109.78111 * 294.41292 * 4 2 1 35 35 H 1.08995 * 109.62275 * 291.63154 * 7 5 4 36 36 H 1.08996 * 109.78566 * 171.15084 * 7 5 4 37 37 H 1.08991 * 109.48058 * 185.39763 * 8 7 5 38 38 H 1.08992 * 109.47972 * 65.34977 * 8 7 5 39 39 H 0.97008 * 119.99797 * 359.97438 * 13 11 9 40 40 H 1.09010 * 109.47350 * 59.99516 * 14 13 11 41 41 H 1.09005 * 109.46736 * 300.00291 * 14 13 11 42 42 H 1.07994 * 119.96277 * 0.04729 * 16 15 14 43 43 H 1.08004 * 120.02708 * 180.02562 * 17 16 15 44 44 H 0.96994 * 120.00302 * 0.02562 * 23 22 20 45 45 H 1.07997 * 120.03627 * 179.73107 * 28 18 17 46 46 H 1.07998 * 119.96582 * 180.27387 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7231 1.2506 5 6 3.5476 -0.8285 1.1632 6 8 4.2476 -0.4685 2.0791 7 6 4.1548 -1.3965 -0.1004 8 6 3.5671 -0.6490 -1.3020 9 6 2.0401 -0.7217 -1.2484 10 1 1.7281 -1.7656 -1.2151 11 6 1.4640 -0.0658 -2.4768 12 8 1.3148 1.1374 -2.5082 13 7 1.1146 -0.8161 -3.5404 14 6 0.5550 -0.1785 -4.7347 15 6 0.2517 -1.2302 -5.7704 16 6 -0.9910 -1.8369 -5.7943 17 6 -1.2719 -2.8015 -6.7419 18 6 -0.3049 -3.1624 -7.6710 19 8 -0.5778 -4.1106 -8.6034 20 6 -1.8341 -4.5997 -8.6295 21 1 -2.5470 -4.2973 -7.8767 22 6 -2.2107 -5.4906 -9.6230 23 7 -1.3421 -5.8590 -10.5398 24 14 -3.9514 -6.1676 -9.6596 25 1 -4.0131 -7.4177 -8.8605 26 1 -4.8843 -5.1657 -9.0842 27 1 -4.3403 -6.4575 -11.0630 28 6 0.9439 -2.5554 -7.6408 29 6 1.2168 -1.5878 -6.6941 30 1 -0.3633 -1.0229 -0.0987 31 1 -0.3632 0.4259 0.9353 32 1 -0.3633 0.5970 -0.8364 33 1 1.6065 -1.7215 1.2994 34 1 1.7645 -0.1595 2.1415 35 1 3.9159 -2.4572 -0.1766 36 1 5.2366 -1.2654 -0.0812 37 1 3.9207 -1.1089 -2.2247 38 1 3.8826 0.3938 -1.2711 39 1 1.2342 -1.7785 -3.5154 40 1 1.2763 0.5319 -5.1391 41 1 -0.3628 0.3467 -4.4699 42 1 -1.7425 -1.5558 -5.0715 43 1 -2.2426 -3.2745 -6.7603 44 1 -0.4382 -5.5078 -10.5206 45 1 1.6994 -2.8371 -8.3593 46 1 2.1862 -1.1122 -6.6729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417631788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:16 Heat of formation + Delta-G solvation = -127.081768 kcal Electronic energy + Delta-G solvation = -27326.662516 eV Core-core repulsion = 23372.861404 eV Total energy + Delta-G solvation = -3953.801113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63309 -40.94787 -40.27111 -38.69545 -37.44860 -35.67346 -34.29114 -33.56057 -31.91333 -31.69096 -30.25006 -28.05403 -27.23680 -26.18893 -23.88145 -23.63976 -22.64151 -22.15829 -21.09667 -20.29339 -20.18571 -18.83270 -18.26284 -17.15650 -17.09039 -16.64971 -16.52643 -16.20840 -15.96906 -15.73107 -15.70395 -15.62603 -15.31363 -15.19708 -14.88268 -14.69405 -14.28625 -14.12768 -13.73600 -13.38642 -13.23805 -13.19092 -13.01150 -12.93417 -12.88412 -12.56952 -12.48701 -12.35956 -12.08453 -11.95445 -11.92792 -11.82315 -11.58038 -11.29144 -10.85059 -10.68277 -10.42603 -10.04701 -9.86898 -9.08750 -8.93917 -6.25220 0.48779 0.51348 0.92982 1.50035 1.62228 1.66732 1.77880 2.28060 2.35195 2.85929 3.11147 3.13582 3.32134 3.51039 3.64142 3.72029 3.85401 3.94481 3.98245 4.11673 4.20981 4.25945 4.31604 4.40168 4.41935 4.51568 4.53641 4.64074 4.70752 4.73974 4.78432 4.86265 4.90691 4.96534 5.03698 5.10299 5.19594 5.21873 5.22391 5.27899 5.34169 5.46305 5.49618 5.67736 5.72738 6.01457 6.26795 6.48460 6.63080 6.85181 7.30121 7.60904 8.50489 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002027 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.375423 B =13807.457559 C =13914.490115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 H 0.063 0.937 4 C -0.158 4.158 5 C 0.362 3.638 6 O -0.505 6.505 7 C -0.162 4.162 8 C -0.098 4.098 9 C -0.103 4.103 10 H 0.129 0.871 11 C 0.520 3.480 12 O -0.582 6.582 13 N -0.713 5.713 14 C 0.183 3.817 15 C -0.176 4.176 16 C -0.045 4.045 17 C -0.242 4.242 18 C 0.123 3.877 19 O -0.250 6.250 20 C -0.486 4.486 21 H 0.094 0.906 22 C -0.044 4.044 23 N -0.917 5.917 24 Si 1.146 2.854 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.276 1.276 28 C -0.204 4.204 29 C -0.043 4.043 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.261 0.739 45 H 0.116 0.884 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 7.887 21.566 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.196 4.196 5 C 0.240 3.760 6 O -0.381 6.381 7 C -0.199 4.199 8 C -0.136 4.136 9 C -0.124 4.124 10 H 0.147 0.853 11 C 0.308 3.692 12 O -0.462 6.462 13 N -0.365 5.365 14 C 0.060 3.940 15 C -0.178 4.178 16 C -0.064 4.064 17 C -0.261 4.261 18 C 0.073 3.927 19 O -0.157 6.157 20 C -0.562 4.562 21 H 0.111 0.889 22 C -0.241 4.241 23 N -0.551 5.551 24 Si 0.962 3.038 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.201 1.201 28 C -0.224 4.224 29 C -0.062 4.062 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.702 7.825 20.984 22.884 hybrid contribution 1.161 0.671 0.245 1.364 sum 5.863 8.496 21.230 23.606 Atomic orbital electron populations 1.21866 0.93672 1.02931 1.02211 1.20846 0.96803 0.99013 0.91577 0.91893 1.22396 0.92947 1.04955 0.99268 1.25438 0.92375 0.71229 0.86908 1.90419 1.66431 1.39804 1.41493 1.22315 1.02016 1.03359 0.92226 1.21397 0.91947 1.01269 0.99006 1.21521 0.96732 1.02722 0.91437 0.85304 1.20932 0.76826 0.86895 0.84578 1.90696 1.56019 1.16436 1.83022 1.46234 1.63794 1.11751 1.14707 1.19855 0.98841 0.92364 0.82938 1.19528 0.94771 1.02814 1.00639 1.20957 0.96598 0.92905 0.95899 1.21259 1.00465 1.04492 0.99857 1.19896 0.95169 0.88388 0.89263 1.83654 1.32555 1.48867 1.50611 1.22610 0.86788 1.29644 1.17119 0.88884 1.28345 1.10446 0.94633 0.90655 1.70684 1.06305 1.43391 1.34764 0.82549 0.66900 0.76798 0.77552 1.18822 1.18310 1.20083 1.20460 0.95160 1.02350 1.04381 1.20896 0.99350 0.93846 0.92058 0.90650 0.91476 0.93891 0.85105 0.89254 0.84925 0.88998 0.88457 0.92332 0.75061 0.91057 0.91295 0.84172 0.86441 0.93034 0.86604 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.76 71.98 0.63 -1.25 16 2 C -0.06 -0.79 1.96 -10.73 -0.02 -0.81 16 3 H 0.06 1.10 7.98 -2.39 -0.02 1.09 16 4 C -0.16 -1.54 5.45 30.11 0.16 -1.38 16 5 C 0.36 5.09 6.72 29.46 0.20 5.29 16 6 O -0.50 -11.66 17.89 -1.45 -0.03 -11.68 16 7 C -0.16 -1.38 6.17 30.11 0.19 -1.20 16 8 C -0.10 -0.98 5.20 30.66 0.16 -0.82 16 9 C -0.10 -1.12 1.99 -11.57 -0.02 -1.14 16 10 H 0.13 0.61 8.09 -2.38 -0.02 0.59 16 11 C 0.52 9.37 5.77 87.66 0.51 9.87 16 12 O -0.58 -15.54 15.64 -3.04 -0.05 -15.58 16 13 N -0.71 -11.80 5.55 -466.80 -2.59 -14.39 16 14 C 0.18 3.81 5.79 85.63 0.50 4.31 16 15 C -0.18 -4.52 5.25 -19.83 -0.10 -4.63 16 16 C -0.05 -1.33 9.69 22.25 0.22 -1.11 16 17 C -0.24 -9.53 9.17 22.39 0.21 -9.33 16 18 C 0.12 5.61 6.65 22.58 0.15 5.76 16 19 O -0.25 -14.07 9.16 -22.80 -0.21 -14.27 16 20 C -0.49 -27.16 9.49 67.92 0.64 -26.51 16 21 H 0.09 4.81 5.20 -2.91 -0.02 4.80 16 22 C -0.04 -2.46 5.49 84.83 0.47 -1.99 16 23 N -0.92 -55.78 13.70 21.61 0.30 -55.48 16 24 Si 1.15 46.35 29.92 68.60 2.05 48.40 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 27 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 28 C -0.20 -7.66 9.99 22.39 0.22 -7.43 16 29 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.77 6.79 -2.39 -0.02 0.75 16 33 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.41 5.28 8.42 -92.70 -0.78 4.50 16 40 H 0.07 1.52 8.08 -2.38 -0.02 1.50 16 41 H 0.07 1.50 8.09 -2.38 -0.02 1.48 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.12 4.86 5.63 -2.91 -0.02 4.84 16 44 H 0.26 16.53 7.97 -92.71 -0.74 15.79 16 45 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 46 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -76.82 381.97 4.04 -72.78 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.25 Total: 23.58 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 4.31 Total: -33.35 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -2.29 Total: -69.88 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.28 Total: -41.54 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.05 Total: 48.40 kcal Total: -76.82 4.04 -72.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.305 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds