Wall clock time and date at job start Tue Mar 31 2020 17:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.49241 * 2 1 4 4 C 1.53227 * 109.48319 * 239.96992 * 2 1 3 5 5 C 1.51264 * 108.53952 * 185.39033 * 4 2 1 6 6 O 1.20763 * 120.85238 * 231.37261 * 5 4 2 7 7 C 1.51271 * 118.29930 * 51.34495 * 5 4 2 8 8 C 1.53232 * 108.53889 * 308.65619 * 7 5 4 9 9 C 1.52953 * 109.48399 * 120.03744 * 2 1 3 10 10 H 1.08995 * 109.35985 * 63.51079 * 9 2 1 11 11 C 1.50705 * 109.41533 * 303.68544 * 9 2 1 12 12 O 1.21281 * 119.99752 * 274.83226 * 11 9 2 13 13 N 1.34771 * 120.00110 * 94.82994 * 11 9 2 14 14 C 1.46501 * 119.99825 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.46766 * 179.97438 * 14 13 11 16 16 C 1.38301 * 119.92903 * 90.00211 * 15 14 13 17 17 C 1.38107 * 120.06781 * 179.97438 * 16 15 14 18 18 C 1.38878 * 119.93093 * 359.97438 * 17 16 15 19 19 O 1.35749 * 120.06903 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99784 * 5.58969 * 19 18 17 21 21 H 1.08002 * 120.00323 * 354.93440 * 20 19 18 22 22 C 1.38654 * 119.99863 * 174.66575 * 20 19 18 23 23 N 1.31562 * 120.00195 * 0.27228 * 22 20 19 24 24 Si 1.86799 * 120.00149 * 180.27637 * 22 20 19 25 25 H 1.48499 * 109.47058 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47377 * 119.99701 * 24 22 20 27 27 H 1.48502 * 109.47181 * 239.99456 * 24 22 20 28 28 C 1.38876 * 119.86090 * 0.27304 * 18 17 16 29 29 C 1.38102 * 119.93148 * 359.43040 * 28 18 17 30 30 H 1.09004 * 109.47125 * 295.18312 * 1 2 3 31 31 H 1.08995 * 109.47841 * 55.18956 * 1 2 3 32 32 H 1.09007 * 109.47111 * 175.18801 * 1 2 3 33 33 H 1.09005 * 109.62538 * 65.67750 * 4 2 1 34 34 H 1.09001 * 109.62745 * 305.10844 * 4 2 1 35 35 H 1.09001 * 109.63058 * 188.93814 * 7 5 4 36 36 H 1.09005 * 109.62752 * 68.36961 * 7 5 4 37 37 H 1.08996 * 109.47738 * 294.64567 * 8 7 5 38 38 H 1.08997 * 109.48028 * 174.60330 * 8 7 5 39 39 H 0.97003 * 119.99931 * 359.97438 * 13 11 9 40 40 H 1.08993 * 109.47153 * 60.00028 * 14 13 11 41 41 H 1.08995 * 109.47035 * 299.99341 * 14 13 11 42 42 H 1.08000 * 119.96756 * 359.97438 * 16 15 14 43 43 H 1.07998 * 120.03296 * 180.02562 * 17 16 15 44 44 H 0.96998 * 120.00266 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.03550 * 179.72273 * 28 18 17 46 46 H 1.08003 * 119.96663 * 180.27566 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7229 -1.2506 5 6 3.5475 -0.8282 -1.1635 6 8 4.2475 -0.4674 -2.0790 7 6 4.1548 -1.3963 0.1002 8 6 3.5670 -0.6489 1.3018 9 6 2.0401 -0.7218 1.2483 10 1 1.7282 -1.7656 1.2149 11 6 1.4640 -0.0660 2.4768 12 8 2.0100 0.9037 2.9590 13 7 0.3421 -0.5569 3.0394 14 6 -0.2182 0.0810 4.2333 15 6 -1.4626 -0.6548 4.6588 16 6 -1.3704 -1.7099 5.5481 17 6 -2.5091 -2.3858 5.9403 18 6 -3.7477 -2.0047 5.4411 19 8 -4.8688 -2.6668 5.8252 20 6 -4.7270 -3.6079 6.7802 21 1 -3.7430 -3.8632 7.1450 22 6 -5.8449 -4.2441 7.2981 23 7 -7.0436 -3.9333 6.8537 24 14 -5.6491 -5.5424 8.6267 25 1 -4.2090 -5.7070 8.9495 26 1 -6.3847 -5.1187 9.8452 27 1 -6.1979 -6.8341 8.1413 28 6 -3.8364 -0.9481 4.5443 29 6 -2.6948 -0.2722 4.1607 30 1 -0.3633 0.4373 0.9300 31 1 -0.3634 0.5866 -0.8437 32 1 -0.3634 -1.0241 -0.0862 33 1 1.7645 -0.1562 -2.1398 34 1 1.6065 -1.7214 -1.2996 35 1 5.2363 -1.2623 0.0790 36 1 3.9159 -2.4571 0.1763 37 1 3.8826 0.3939 1.2710 38 1 3.9208 -1.1090 2.2245 39 1 -0.0948 -1.3322 2.6535 40 1 -0.4686 1.1175 4.0078 41 1 0.5152 0.0514 5.0391 42 1 -0.4069 -2.0056 5.9363 43 1 -2.4364 -3.2094 6.6351 44 1 -7.8256 -4.3780 7.2162 45 1 -4.7977 -0.6522 4.1509 46 1 -2.7637 0.5525 3.4667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417631789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:21 Heat of formation + Delta-G solvation = -99.590642 kcal Electronic energy + Delta-G solvation = -27408.270239 eV Core-core repulsion = 23455.661231 eV Total energy + Delta-G solvation = -3952.609008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88219 -39.58748 -39.08515 -37.12615 -36.60137 -34.53764 -32.95561 -32.41448 -30.58454 -30.31113 -29.31148 -27.40872 -25.97276 -24.86692 -23.06946 -22.11385 -21.82249 -20.69839 -20.30740 -19.60457 -18.13290 -17.57615 -17.00476 -16.24851 -16.07378 -15.78811 -15.51126 -15.03045 -14.87349 -14.75050 -14.56405 -14.15633 -14.04057 -13.72042 -13.47835 -13.42821 -13.13713 -12.84500 -12.76906 -12.72546 -12.60122 -12.40490 -12.13161 -11.80060 -11.73214 -11.46838 -11.46120 -11.22995 -11.03165 -11.00120 -10.83623 -10.74671 -10.51299 -9.83993 -9.79033 -9.47528 -9.03235 -8.95680 -8.34484 -7.38003 -6.57497 -4.16460 1.56166 2.00775 2.07193 2.53020 3.03569 3.06456 3.12021 3.26383 3.68821 3.86364 4.13740 4.19723 4.32986 4.45884 4.54571 4.76564 4.80527 4.88182 4.96059 4.98282 5.07523 5.09672 5.13929 5.20422 5.25317 5.35399 5.37917 5.47306 5.56823 5.60051 5.69014 5.74053 5.75583 5.81410 5.87596 5.92600 6.06774 6.29116 6.42721 6.54363 6.74601 6.90433 7.08635 7.09963 7.21433 7.30118 7.51056 7.66129 7.87150 8.16798 8.87946 9.55639 10.59981 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002044 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.417767 B =13693.253837 C =13749.668318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 H 0.083 0.917 4 C -0.164 4.164 5 C 0.362 3.638 6 O -0.459 6.459 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.109 4.109 10 H 0.096 0.904 11 C 0.517 3.483 12 O -0.545 6.545 13 N -0.719 5.719 14 C 0.178 3.822 15 C -0.215 4.215 16 C -0.051 4.051 17 C -0.237 4.237 18 C 0.160 3.840 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.858 5.858 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.195 4.195 29 C -0.054 4.054 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 3.275 -11.495 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.201 4.201 5 C 0.237 3.763 6 O -0.332 6.332 7 C -0.207 4.207 8 C -0.135 4.135 9 C -0.130 4.130 10 H 0.114 0.886 11 C 0.303 3.697 12 O -0.423 6.423 13 N -0.371 5.371 14 C 0.056 3.944 15 C -0.217 4.217 16 C -0.069 4.069 17 C -0.256 4.256 18 C 0.106 3.894 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.214 4.214 29 C -0.073 4.073 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.237 0.763 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.341 4.113 -11.627 20.473 hybrid contribution -0.295 -1.180 0.674 1.390 sum 16.046 2.933 -10.953 19.648 Atomic orbital electron populations 1.21997 0.93489 1.02846 1.03177 1.21007 0.96882 0.99902 0.91322 0.89836 1.22406 0.94212 1.03568 0.99952 1.24928 0.91612 0.72805 0.86941 1.90422 1.65401 1.37667 1.39718 1.22343 1.02253 1.01930 0.94199 1.21356 0.92468 1.02199 0.97458 1.21468 0.96821 1.01315 0.93439 0.88588 1.20417 0.80451 0.84117 0.84702 1.90699 1.60517 1.27047 1.64003 1.46482 1.26836 1.33662 1.30086 1.19985 0.92615 0.95506 0.86340 1.19194 0.93570 1.02579 1.06334 1.20639 0.97235 0.93859 0.95216 1.21164 0.92196 1.04989 1.07282 1.19442 0.87142 0.90479 0.92381 1.83979 1.27866 1.45509 1.50188 1.21405 0.95033 1.14988 1.15504 0.88851 1.25331 0.94200 0.98601 0.98369 1.70043 0.97945 1.40497 1.40774 0.85626 0.78910 0.79337 0.79445 1.19037 1.20036 1.20053 1.20215 0.98753 0.98586 1.03893 1.20518 0.91391 0.97771 0.97614 0.91414 0.91851 0.91772 0.88847 0.87883 0.88930 0.88092 0.90102 0.90130 0.76326 0.91563 0.91585 0.87433 0.85427 0.91888 0.86390 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.92 37.16 0.33 -0.75 16 2 C -0.07 -0.50 2.29 -90.53 -0.21 -0.71 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.16 -1.01 5.45 -27.49 -0.15 -1.16 16 5 C 0.36 2.95 6.72 -28.48 -0.19 2.76 16 6 O -0.46 -5.49 17.89 6.00 0.11 -5.39 16 7 C -0.17 -1.04 6.17 -27.48 -0.17 -1.21 16 8 C -0.10 -0.71 4.81 -26.63 -0.13 -0.84 16 9 C -0.11 -0.81 1.99 -91.81 -0.18 -0.99 16 10 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 11 C 0.52 5.61 5.66 -10.99 -0.06 5.55 16 12 O -0.55 -8.04 16.35 5.56 0.09 -7.95 16 13 N -0.72 -7.55 4.70 -61.47 -0.29 -7.84 16 14 C 0.18 2.24 5.80 -5.19 -0.03 2.21 16 15 C -0.22 -3.18 5.25 -104.57 -0.55 -3.73 16 16 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 17 C -0.24 -4.70 9.17 -39.39 -0.36 -5.06 16 18 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 19 O -0.17 -4.67 9.76 0.05 0.00 -4.67 16 20 C -0.39 -10.44 9.49 30.89 0.29 -10.15 16 21 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 22 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 23 N -0.86 -24.22 13.67 55.48 0.76 -23.46 16 24 Si 0.94 19.63 29.55 -169.99 -5.02 14.60 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 28 C -0.20 -3.75 9.99 -39.40 -0.39 -4.14 16 29 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 30 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.72 7.97 -51.93 -0.41 0.30 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 3.64 8.44 -40.82 -0.34 3.30 16 40 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -32.08 382.00 -8.23 -40.31 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.70 Total: 5.01 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.92 Total: -16.38 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.47 Total: -31.29 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.20 Total: -18.01 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.08 -8.23 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.278 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds