Wall clock time and date at job start Tue Mar 31 2020 17:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.49241 * 2 1 4 4 C 1.53227 * 109.48319 * 239.96992 * 2 1 3 5 5 C 1.51264 * 108.53952 * 185.39033 * 4 2 1 6 6 O 1.20763 * 120.85238 * 231.37261 * 5 4 2 7 7 C 1.51271 * 118.29930 * 51.34495 * 5 4 2 8 8 C 1.53232 * 108.53889 * 308.65619 * 7 5 4 9 9 C 1.52953 * 109.48399 * 120.03744 * 2 1 3 10 10 H 1.08995 * 109.35985 * 63.51079 * 9 2 1 11 11 C 1.50705 * 109.41533 * 303.68544 * 9 2 1 12 12 O 1.21281 * 119.99752 * 274.83226 * 11 9 2 13 13 N 1.34771 * 120.00110 * 94.82994 * 11 9 2 14 14 C 1.46501 * 119.99825 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.46766 * 179.97438 * 14 13 11 16 16 C 1.38301 * 119.92903 * 90.00211 * 15 14 13 17 17 C 1.38107 * 120.06781 * 179.97438 * 16 15 14 18 18 C 1.38878 * 119.93093 * 359.97438 * 17 16 15 19 19 O 1.35749 * 120.06903 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99784 * 5.58969 * 19 18 17 21 21 H 1.08002 * 120.00323 * 354.93440 * 20 19 18 22 22 C 1.38654 * 119.99863 * 174.66575 * 20 19 18 23 23 N 1.31562 * 120.00195 * 0.27228 * 22 20 19 24 24 Si 1.86799 * 120.00149 * 180.27637 * 22 20 19 25 25 H 1.48499 * 109.47058 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47377 * 119.99701 * 24 22 20 27 27 H 1.48502 * 109.47181 * 239.99456 * 24 22 20 28 28 C 1.38876 * 119.86090 * 0.27304 * 18 17 16 29 29 C 1.38102 * 119.93148 * 359.43040 * 28 18 17 30 30 H 1.09004 * 109.47125 * 295.18312 * 1 2 3 31 31 H 1.08995 * 109.47841 * 55.18956 * 1 2 3 32 32 H 1.09007 * 109.47111 * 175.18801 * 1 2 3 33 33 H 1.09005 * 109.62538 * 65.67750 * 4 2 1 34 34 H 1.09001 * 109.62745 * 305.10844 * 4 2 1 35 35 H 1.09001 * 109.63058 * 188.93814 * 7 5 4 36 36 H 1.09005 * 109.62752 * 68.36961 * 7 5 4 37 37 H 1.08996 * 109.47738 * 294.64567 * 8 7 5 38 38 H 1.08997 * 109.48028 * 174.60330 * 8 7 5 39 39 H 0.97003 * 119.99931 * 359.97438 * 13 11 9 40 40 H 1.08993 * 109.47153 * 60.00028 * 14 13 11 41 41 H 1.08995 * 109.47035 * 299.99341 * 14 13 11 42 42 H 1.08000 * 119.96756 * 359.97438 * 16 15 14 43 43 H 1.07998 * 120.03296 * 180.02562 * 17 16 15 44 44 H 0.96998 * 120.00266 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.03550 * 179.72273 * 28 18 17 46 46 H 1.08003 * 119.96663 * 180.27566 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7229 -1.2506 5 6 3.5475 -0.8282 -1.1635 6 8 4.2475 -0.4674 -2.0790 7 6 4.1548 -1.3963 0.1002 8 6 3.5670 -0.6489 1.3018 9 6 2.0401 -0.7218 1.2483 10 1 1.7282 -1.7656 1.2149 11 6 1.4640 -0.0660 2.4768 12 8 2.0100 0.9037 2.9590 13 7 0.3421 -0.5569 3.0394 14 6 -0.2182 0.0810 4.2333 15 6 -1.4626 -0.6548 4.6588 16 6 -1.3704 -1.7099 5.5481 17 6 -2.5091 -2.3858 5.9403 18 6 -3.7477 -2.0047 5.4411 19 8 -4.8688 -2.6668 5.8252 20 6 -4.7270 -3.6079 6.7802 21 1 -3.7430 -3.8632 7.1450 22 6 -5.8449 -4.2441 7.2981 23 7 -7.0436 -3.9333 6.8537 24 14 -5.6491 -5.5424 8.6267 25 1 -4.2090 -5.7070 8.9495 26 1 -6.3847 -5.1187 9.8452 27 1 -6.1979 -6.8341 8.1413 28 6 -3.8364 -0.9481 4.5443 29 6 -2.6948 -0.2722 4.1607 30 1 -0.3633 0.4373 0.9300 31 1 -0.3634 0.5866 -0.8437 32 1 -0.3634 -1.0241 -0.0862 33 1 1.7645 -0.1562 -2.1398 34 1 1.6065 -1.7214 -1.2996 35 1 5.2363 -1.2623 0.0790 36 1 3.9159 -2.4571 0.1763 37 1 3.8826 0.3939 1.2710 38 1 3.9208 -1.1090 2.2245 39 1 -0.0948 -1.3322 2.6535 40 1 -0.4686 1.1175 4.0078 41 1 0.5152 0.0514 5.0391 42 1 -0.4069 -2.0056 5.9363 43 1 -2.4364 -3.2094 6.6351 44 1 -7.8256 -4.3780 7.2162 45 1 -4.7977 -0.6522 4.1509 46 1 -2.7637 0.5525 3.4667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417631789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:20 Heat of formation + Delta-G solvation = -119.533202 kcal Electronic energy + Delta-G solvation = -27409.135013 eV Core-core repulsion = 23455.661231 eV Total energy + Delta-G solvation = -3953.473782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62953 -40.83085 -40.24484 -38.54055 -37.46488 -35.65315 -34.26534 -33.50896 -31.84560 -31.64450 -30.21568 -28.00513 -27.59512 -26.23783 -23.76995 -23.62265 -22.55990 -22.03502 -21.13289 -20.20674 -19.85296 -18.89596 -18.25079 -17.09536 -16.84345 -16.54265 -16.50064 -16.25931 -16.11800 -15.80919 -15.70791 -15.51014 -15.20303 -15.12605 -14.67541 -14.38974 -14.24048 -14.04522 -13.68956 -13.62704 -13.32305 -13.27283 -13.12077 -13.03092 -12.90109 -12.56061 -12.44378 -12.32846 -12.22785 -12.08094 -12.01678 -11.79473 -11.57487 -11.17993 -10.87883 -10.69279 -10.42045 -9.99667 -9.78444 -8.98194 -8.47505 -6.15397 0.57167 0.60083 0.94017 1.36935 1.43981 1.54516 1.67701 2.17581 2.31863 2.86964 3.13139 3.18620 3.51431 3.55369 3.62842 3.73676 3.90697 3.97555 4.05783 4.19712 4.21595 4.26560 4.34061 4.42184 4.48505 4.52528 4.59155 4.64970 4.74404 4.79733 4.83482 4.89464 4.94625 5.05016 5.07516 5.14580 5.16099 5.23539 5.26253 5.28978 5.39135 5.49666 5.55557 5.71471 5.77526 6.02960 6.18548 6.49498 6.65322 6.97767 7.31602 7.77564 8.75502 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002044 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.417767 B =13693.253837 C =13749.668318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.066 4.066 3 H 0.062 0.938 4 C -0.157 4.157 5 C 0.362 3.638 6 O -0.505 6.505 7 C -0.162 4.162 8 C -0.093 4.093 9 C -0.103 4.103 10 H 0.130 0.870 11 C 0.520 3.480 12 O -0.586 6.586 13 N -0.711 5.711 14 C 0.183 3.817 15 C -0.180 4.180 16 C -0.045 4.045 17 C -0.244 4.244 18 C 0.122 3.878 19 O -0.230 6.230 20 C -0.411 4.411 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.919 5.919 24 Si 1.017 2.983 25 H -0.250 1.250 26 H -0.271 1.271 27 H -0.269 1.269 28 C -0.204 4.204 29 C -0.043 4.043 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.272 0.728 45 H 0.114 0.886 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.490 2.636 -12.043 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.195 4.195 5 C 0.240 3.760 6 O -0.382 6.382 7 C -0.200 4.200 8 C -0.132 4.132 9 C -0.124 4.124 10 H 0.148 0.852 11 C 0.308 3.692 12 O -0.466 6.466 13 N -0.363 5.363 14 C 0.060 3.940 15 C -0.181 4.181 16 C -0.064 4.064 17 C -0.263 4.263 18 C 0.071 3.929 19 O -0.136 6.136 20 C -0.487 4.487 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.557 5.557 24 Si 0.837 3.163 25 H -0.173 1.173 26 H -0.196 1.196 27 H -0.194 1.194 28 C -0.224 4.224 29 C -0.061 4.061 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.132 0.868 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.788 3.485 -12.199 22.670 hybrid contribution -0.754 -0.698 0.670 1.227 sum 18.033 2.787 -11.529 21.584 Atomic orbital electron populations 1.21992 0.92968 1.03918 1.02507 1.20920 0.97162 0.98921 0.91521 0.91910 1.22398 0.92763 1.05049 0.99246 1.25445 0.92499 0.71223 0.86784 1.90419 1.66482 1.39799 1.41462 1.22331 1.01937 1.03315 0.92387 1.21301 0.92529 1.01109 0.98217 1.21516 0.96537 1.02776 0.91571 0.85220 1.20933 0.79798 0.83389 0.85081 1.90696 1.61618 1.28942 1.65317 1.46281 1.26836 1.33834 1.29334 1.19856 0.91369 0.95401 0.87394 1.19485 0.94287 1.00653 1.03651 1.20939 0.97288 0.93371 0.94781 1.21244 0.92487 1.05278 1.07268 1.20004 0.87267 0.91758 0.93903 1.83949 1.30181 1.47432 1.52044 1.21858 0.95739 1.15280 1.15811 0.87863 1.26571 0.93660 1.01006 1.00824 1.70184 0.98962 1.43103 1.43463 0.84541 0.79617 0.76142 0.76020 1.17332 1.19640 1.19396 1.20446 1.00108 0.98294 1.03519 1.20863 0.90318 0.97678 0.97258 0.92904 0.91588 0.89965 0.89097 0.84902 0.89213 0.85018 0.92402 0.89561 0.75047 0.91200 0.91301 0.84281 0.86313 0.91851 0.86829 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.92 71.98 0.64 -0.98 16 2 C -0.07 -0.74 2.29 -10.73 -0.02 -0.77 16 3 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.16 -1.46 5.45 30.10 0.16 -1.30 16 5 C 0.36 5.17 6.72 29.46 0.20 5.37 16 6 O -0.51 -11.76 17.89 -1.46 -0.03 -11.78 16 7 C -0.16 -1.54 6.17 30.11 0.19 -1.35 16 8 C -0.09 -1.13 4.81 30.66 0.15 -0.98 16 9 C -0.10 -1.16 1.99 -11.57 -0.02 -1.18 16 10 H 0.13 0.65 8.11 -2.39 -0.02 0.63 16 11 C 0.52 9.62 5.66 87.66 0.50 10.12 16 12 O -0.59 -16.07 16.35 -3.03 -0.05 -16.12 16 13 N -0.71 -11.99 4.70 -466.80 -2.20 -14.19 16 14 C 0.18 3.86 5.80 85.63 0.50 4.36 16 15 C -0.18 -4.64 5.25 -19.83 -0.10 -4.75 16 16 C -0.05 -1.33 9.69 22.25 0.22 -1.12 16 17 C -0.24 -9.51 9.17 22.39 0.21 -9.31 16 18 C 0.12 5.56 6.65 22.58 0.15 5.71 16 19 O -0.23 -13.10 9.76 -22.74 -0.22 -13.33 16 20 C -0.41 -22.77 9.49 67.92 0.64 -22.13 16 21 H 0.10 5.21 5.20 -2.91 -0.02 5.20 16 22 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 23 N -0.92 -54.68 13.67 21.61 0.30 -54.38 16 24 Si 1.02 41.15 29.55 68.60 2.03 43.17 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 28 C -0.20 -7.78 9.99 22.39 0.22 -7.56 16 29 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 30 H 0.05 0.72 6.37 -2.39 -0.02 0.70 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.06 0.98 7.97 -2.39 -0.02 0.96 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.41 5.47 8.44 -92.71 -0.78 4.69 16 40 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 41 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.12 4.79 5.64 -2.91 -0.02 4.78 16 44 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 46 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -76.17 382.00 4.35 -71.82 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.22 Total: 22.44 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.30 Total: -27.64 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.90 Total: -68.57 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.30 Total: -41.23 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.17 4.35 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.711 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds