Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49152 * 2 1 4 4 C 1.53228 * 109.48678 * 239.96182 * 2 1 3 5 5 C 1.51270 * 108.53607 * 294.64910 * 4 2 1 6 6 O 1.20763 * 120.85041 * 128.67210 * 5 4 2 7 7 C 1.51267 * 118.29950 * 308.65259 * 5 4 2 8 8 C 1.53234 * 108.53898 * 51.34449 * 7 5 4 9 9 C 1.52954 * 109.40542 * 305.37585 * 8 7 5 10 10 H 1.09007 * 109.41323 * 303.56314 * 9 8 7 11 11 C 1.50700 * 109.41445 * 183.70387 * 9 8 7 12 12 O 1.21282 * 119.99808 * 239.99790 * 11 9 8 13 13 N 1.34773 * 119.99710 * 59.99960 * 11 9 8 14 14 C 1.46503 * 119.99798 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.47420 * 179.97438 * 14 13 11 16 16 C 1.38299 * 119.93170 * 89.99801 * 15 14 13 17 17 C 1.38093 * 120.06989 * 179.97438 * 16 15 14 18 18 C 1.38885 * 119.93015 * 359.97438 * 17 16 15 19 19 O 1.35753 * 120.06806 * 179.97438 * 18 17 16 20 20 C 1.34835 * 117.00237 * 5.52689 * 19 18 17 21 21 H 1.08001 * 119.99736 * 354.95236 * 20 19 18 22 22 C 1.38649 * 120.00262 * 174.94435 * 20 19 18 23 23 N 1.31560 * 119.99792 * 0.28013 * 22 20 19 24 24 Si 1.86798 * 120.00120 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47139 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47010 * 120.00295 * 24 22 20 27 27 H 1.48500 * 109.47307 * 240.00097 * 24 22 20 28 28 C 1.38870 * 119.86189 * 0.25334 * 18 17 16 29 29 C 1.38105 * 119.93033 * 359.49397 * 28 18 17 30 30 H 1.08998 * 109.47304 * 299.96992 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.97279 * 1 2 3 32 32 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.62971 * 174.93476 * 4 2 1 34 34 H 1.09005 * 109.78173 * 54.44936 * 4 2 1 35 35 H 1.09003 * 109.62521 * 291.63170 * 7 5 4 36 36 H 1.09005 * 109.78360 * 171.15546 * 7 5 4 37 37 H 1.08994 * 109.48013 * 185.39312 * 8 7 5 38 38 H 1.09004 * 109.48612 * 65.36382 * 8 7 5 39 39 H 0.97001 * 120.00527 * 359.97438 * 13 11 9 40 40 H 1.09007 * 109.46948 * 59.99616 * 14 13 11 41 41 H 1.08998 * 109.47004 * 300.00036 * 14 13 11 42 42 H 1.07997 * 119.96429 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.03742 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00403 * 359.72596 * 23 22 20 45 45 H 1.08007 * 120.03473 * 179.72703 * 28 18 17 46 46 H 1.08001 * 119.96282 * 180.22977 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7231 -1.2505 5 6 1.6377 -2.1784 -1.1632 6 8 1.0648 -2.7182 -2.0790 7 6 1.9705 -2.9402 0.1005 8 6 1.4620 -2.1367 1.3021 9 6 2.0401 -0.7216 1.2485 10 1 3.1283 -0.7758 1.2151 11 6 1.6139 0.0404 2.4768 12 8 0.9609 1.0562 2.3640 13 7 1.9585 -0.4069 3.7006 14 6 1.5438 0.3336 4.8947 15 6 2.0527 -0.3718 6.1253 16 6 3.2955 -0.0511 6.6402 17 6 3.7645 -0.6954 7.7681 18 6 2.9863 -1.6660 8.3856 19 8 3.4448 -2.3014 9.4941 20 6 4.6110 -1.8652 10.0116 21 1 5.1765 -1.1007 9.4997 22 6 5.0841 -2.3980 11.2010 23 7 4.3978 -3.3331 11.8218 24 14 6.6993 -1.7932 11.9182 25 1 7.2744 -0.7495 11.0322 26 1 6.4582 -1.2193 13.2664 27 1 7.6492 -2.9295 12.0266 28 6 1.7408 -1.9891 7.8633 29 6 1.2752 -1.3375 6.7382 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1274 -0.6466 -1.2994 34 1 1.6020 -0.2743 -2.1415 35 1 3.0502 -3.0690 0.1767 36 1 1.4858 -3.9164 0.0813 37 1 1.7775 -2.6236 2.2248 38 1 0.3735 -2.0862 1.2714 39 1 2.4805 -1.2195 3.7908 40 1 0.4556 0.3859 4.9301 41 1 1.9549 1.3424 4.8576 42 1 3.8996 0.7046 6.1603 43 1 4.7353 -0.4448 8.1695 44 1 3.5589 -3.6471 11.4496 45 1 1.1352 -2.7466 8.3388 46 1 0.3051 -1.5858 6.3338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417631790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = -101.481151 kcal Electronic energy + Delta-G solvation = -27459.239857 eV Core-core repulsion = 23506.548870 eV Total energy + Delta-G solvation = -3952.690987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04514 -39.62683 -39.17588 -37.26672 -36.64132 -34.66394 -32.58396 -32.31306 -30.56627 -30.38693 -29.34567 -27.60942 -25.61639 -24.63222 -23.54360 -22.12437 -22.05235 -20.82622 -20.40414 -18.85363 -18.52160 -17.61072 -16.94994 -16.55712 -15.95940 -15.66528 -15.60948 -15.29886 -14.88360 -14.73399 -14.40545 -14.14839 -14.03393 -13.91713 -13.81826 -13.53843 -13.39575 -13.12690 -12.90946 -12.75245 -12.31409 -12.21546 -12.00580 -11.95679 -11.49472 -11.35737 -11.22137 -11.18224 -10.98103 -10.90821 -10.87617 -10.43926 -10.40034 -9.80886 -9.75223 -9.55438 -9.06986 -8.89232 -8.42328 -7.46859 -6.90211 -4.19994 1.57805 1.93117 1.99097 2.50232 3.16515 3.18148 3.26707 3.33197 3.69775 4.00254 4.09006 4.22819 4.32549 4.44705 4.53302 4.71244 4.79729 4.83737 4.91373 4.94555 5.04331 5.07571 5.18657 5.18983 5.29479 5.30770 5.40364 5.41902 5.52484 5.60217 5.65468 5.67804 5.75170 5.82679 5.94214 5.98979 6.13613 6.21362 6.40709 6.45824 6.65351 6.86893 7.06037 7.10994 7.14498 7.42475 7.46621 7.55020 8.13312 8.26104 8.77293 9.44667 10.53511 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.002048 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.997233 B =13670.678133 C =14005.224920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.062 4.062 3 H 0.091 0.909 4 C -0.167 4.167 5 C 0.363 3.637 6 O -0.459 6.459 7 C -0.169 4.169 8 C -0.110 4.110 9 C -0.110 4.110 10 H 0.103 0.897 11 C 0.515 3.485 12 O -0.540 6.540 13 N -0.721 5.721 14 C 0.178 3.822 15 C -0.214 4.214 16 C -0.051 4.051 17 C -0.233 4.233 18 C 0.163 3.837 19 O -0.197 6.197 20 C -0.473 4.473 21 H 0.087 0.913 22 C 0.011 3.989 23 N -0.877 5.877 24 Si 1.102 2.898 25 H -0.283 1.283 26 H -0.278 1.278 27 H -0.278 1.278 28 C -0.198 4.198 29 C -0.054 4.054 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.401 0.599 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.283 0.717 45 H 0.117 0.883 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 4.324 -21.019 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.081 4.081 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.239 3.761 6 O -0.333 6.333 7 C -0.207 4.207 8 C -0.148 4.148 9 C -0.132 4.132 10 H 0.121 0.879 11 C 0.301 3.699 12 O -0.418 6.418 13 N -0.372 5.372 14 C 0.056 3.944 15 C -0.215 4.215 16 C -0.069 4.069 17 C -0.252 4.252 18 C 0.109 3.891 19 O -0.101 6.101 20 C -0.549 4.549 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.508 5.508 24 Si 0.926 3.074 25 H -0.208 1.208 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.217 4.217 29 C -0.073 4.073 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.358 4.363 -20.099 20.702 hybrid contribution -0.596 -0.108 -1.137 1.288 sum -2.954 4.254 -21.236 21.858 Atomic orbital electron populations 1.22119 0.94255 1.01688 1.03796 1.20837 0.97081 0.99639 0.90573 0.89070 1.22431 1.03356 0.94304 1.00412 1.24887 0.73965 0.90382 0.86907 1.90420 1.31470 1.71631 1.39732 1.22313 1.04024 1.00233 0.94104 1.21589 1.02107 0.92954 0.98125 1.21453 1.02495 0.95604 0.93618 0.87879 1.20450 0.79673 0.85271 0.84489 1.90661 1.39207 1.25301 1.86609 1.46382 1.55995 1.29212 1.05592 1.19982 0.99049 0.94230 0.81111 1.19219 0.97509 1.04463 1.00320 1.20655 0.94311 0.97309 0.94663 1.21179 1.02439 1.02133 0.99454 1.19290 0.92042 0.90316 0.87480 1.83667 1.38395 1.52020 1.36016 1.22317 0.97166 1.25964 1.09410 0.89600 1.26594 1.05315 0.95490 0.92098 1.70520 1.15551 1.24802 1.39959 0.82992 0.72282 0.75963 0.76174 1.20825 1.20395 1.20395 1.20199 0.95647 1.05723 1.00149 1.20522 0.98082 0.94477 0.94186 0.89684 0.92612 0.93244 0.88215 0.88939 0.87955 0.88859 0.89859 0.90214 0.76402 0.91506 0.91507 0.87294 0.85295 0.90638 0.86533 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.31 37.16 0.31 -1.14 16 2 C -0.06 -0.47 2.33 -90.52 -0.21 -0.68 16 3 H 0.09 0.73 8.00 -51.93 -0.42 0.31 16 4 C -0.17 -1.07 5.65 -27.49 -0.16 -1.22 16 5 C 0.36 2.97 5.75 -28.48 -0.16 2.81 16 6 O -0.46 -5.51 17.89 6.00 0.11 -5.40 16 7 C -0.17 -1.01 6.17 -27.48 -0.17 -1.18 16 8 C -0.11 -0.70 4.88 -26.63 -0.13 -0.83 16 9 C -0.11 -0.79 2.20 -91.82 -0.20 -0.99 16 10 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 11 C 0.52 5.38 6.87 -10.99 -0.08 5.30 16 12 O -0.54 -7.45 13.87 5.56 0.08 -7.38 16 13 N -0.72 -7.44 5.42 -61.47 -0.33 -7.77 16 14 C 0.18 2.22 5.80 -5.19 -0.03 2.19 16 15 C -0.21 -3.15 5.25 -104.58 -0.55 -3.70 16 16 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 17 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 18 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 19 O -0.20 -5.27 9.16 0.02 0.00 -5.27 16 20 C -0.47 -12.68 9.49 30.88 0.29 -12.39 16 21 H 0.09 2.16 5.20 -52.49 -0.27 1.89 16 22 C 0.01 0.30 5.49 -17.52 -0.10 0.20 16 23 N -0.88 -25.27 13.70 55.48 0.76 -24.51 16 24 Si 1.10 22.79 29.92 -169.99 -5.09 17.70 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 28 C -0.20 -3.78 9.99 -39.40 -0.39 -4.17 16 29 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 30 H 0.08 0.94 5.82 -51.93 -0.30 0.63 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.44 5.61 -51.93 -0.29 0.15 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.46 7.45 -51.93 -0.39 0.07 16 38 H 0.08 0.59 6.20 -51.93 -0.32 0.27 16 39 H 0.40 3.57 7.83 -40.82 -0.32 3.25 16 40 H 0.07 0.85 8.08 -51.92 -0.42 0.43 16 41 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 44 H 0.28 8.34 7.97 -40.82 -0.33 8.01 16 45 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -31.90 373.55 -8.18 -40.08 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.37 Total: 6.79 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.96 Total: -19.86 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.43 Total: -32.28 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.05 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.09 Total: 17.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.90 -8.18 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.406 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds