Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49152 * 2 1 4 4 C 1.53228 * 109.48678 * 239.96182 * 2 1 3 5 5 C 1.51270 * 108.53607 * 294.64910 * 4 2 1 6 6 O 1.20763 * 120.85041 * 128.67210 * 5 4 2 7 7 C 1.51267 * 118.29950 * 308.65259 * 5 4 2 8 8 C 1.53234 * 108.53898 * 51.34449 * 7 5 4 9 9 C 1.52954 * 109.40542 * 305.37585 * 8 7 5 10 10 H 1.09007 * 109.41323 * 303.56314 * 9 8 7 11 11 C 1.50700 * 109.41445 * 183.70387 * 9 8 7 12 12 O 1.21282 * 119.99808 * 239.99790 * 11 9 8 13 13 N 1.34773 * 119.99710 * 59.99960 * 11 9 8 14 14 C 1.46503 * 119.99798 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.47420 * 179.97438 * 14 13 11 16 16 C 1.38299 * 119.93170 * 89.99801 * 15 14 13 17 17 C 1.38093 * 120.06989 * 179.97438 * 16 15 14 18 18 C 1.38885 * 119.93015 * 359.97438 * 17 16 15 19 19 O 1.35753 * 120.06806 * 179.97438 * 18 17 16 20 20 C 1.34835 * 117.00237 * 5.52689 * 19 18 17 21 21 H 1.08001 * 119.99736 * 354.95236 * 20 19 18 22 22 C 1.38649 * 120.00262 * 174.94435 * 20 19 18 23 23 N 1.31560 * 119.99792 * 0.28013 * 22 20 19 24 24 Si 1.86798 * 120.00120 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47139 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47010 * 120.00295 * 24 22 20 27 27 H 1.48500 * 109.47307 * 240.00097 * 24 22 20 28 28 C 1.38870 * 119.86189 * 0.25334 * 18 17 16 29 29 C 1.38105 * 119.93033 * 359.49397 * 28 18 17 30 30 H 1.08998 * 109.47304 * 299.96992 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.97279 * 1 2 3 32 32 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.62971 * 174.93476 * 4 2 1 34 34 H 1.09005 * 109.78173 * 54.44936 * 4 2 1 35 35 H 1.09003 * 109.62521 * 291.63170 * 7 5 4 36 36 H 1.09005 * 109.78360 * 171.15546 * 7 5 4 37 37 H 1.08994 * 109.48013 * 185.39312 * 8 7 5 38 38 H 1.09004 * 109.48612 * 65.36382 * 8 7 5 39 39 H 0.97001 * 120.00527 * 359.97438 * 13 11 9 40 40 H 1.09007 * 109.46948 * 59.99616 * 14 13 11 41 41 H 1.08998 * 109.47004 * 300.00036 * 14 13 11 42 42 H 1.07997 * 119.96429 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.03742 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00403 * 359.72596 * 23 22 20 45 45 H 1.08007 * 120.03473 * 179.72703 * 28 18 17 46 46 H 1.08001 * 119.96282 * 180.22977 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7231 -1.2505 5 6 1.6377 -2.1784 -1.1632 6 8 1.0648 -2.7182 -2.0790 7 6 1.9705 -2.9402 0.1005 8 6 1.4620 -2.1367 1.3021 9 6 2.0401 -0.7216 1.2485 10 1 3.1283 -0.7758 1.2151 11 6 1.6139 0.0404 2.4768 12 8 0.9609 1.0562 2.3640 13 7 1.9585 -0.4069 3.7006 14 6 1.5438 0.3336 4.8947 15 6 2.0527 -0.3718 6.1253 16 6 3.2955 -0.0511 6.6402 17 6 3.7645 -0.6954 7.7681 18 6 2.9863 -1.6660 8.3856 19 8 3.4448 -2.3014 9.4941 20 6 4.6110 -1.8652 10.0116 21 1 5.1765 -1.1007 9.4997 22 6 5.0841 -2.3980 11.2010 23 7 4.3978 -3.3331 11.8218 24 14 6.6993 -1.7932 11.9182 25 1 7.2744 -0.7495 11.0322 26 1 6.4582 -1.2193 13.2664 27 1 7.6492 -2.9295 12.0266 28 6 1.7408 -1.9891 7.8633 29 6 1.2752 -1.3375 6.7382 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1274 -0.6466 -1.2994 34 1 1.6020 -0.2743 -2.1415 35 1 3.0502 -3.0690 0.1767 36 1 1.4858 -3.9164 0.0813 37 1 1.7775 -2.6236 2.2248 38 1 0.3735 -2.0862 1.2714 39 1 2.4805 -1.2195 3.7908 40 1 0.4556 0.3859 4.9301 41 1 1.9549 1.3424 4.8576 42 1 3.8996 0.7046 6.1603 43 1 4.7353 -0.4448 8.1695 44 1 3.5589 -3.6471 11.4496 45 1 1.1352 -2.7466 8.3388 46 1 0.3051 -1.5858 6.3338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417631790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = -121.488700 kcal Electronic energy + Delta-G solvation = -27460.107449 eV Core-core repulsion = 23506.548870 eV Total energy + Delta-G solvation = -3953.558579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75683 -40.95659 -40.25606 -38.69516 -37.49470 -35.73516 -34.30352 -33.05587 -31.90471 -31.62620 -30.21424 -28.34612 -27.21338 -26.08333 -24.09733 -23.63983 -22.87550 -22.20119 -21.18555 -20.28113 -19.47145 -18.78688 -18.22377 -17.30825 -17.08081 -16.78873 -16.38042 -16.23625 -15.91720 -15.69399 -15.68720 -15.63328 -15.31315 -15.06280 -14.91680 -14.65056 -14.57275 -14.30553 -13.80254 -13.50480 -13.25409 -13.01481 -12.90978 -12.86681 -12.63113 -12.58666 -12.50107 -12.37273 -12.08893 -12.01432 -11.90799 -11.77519 -11.46786 -11.29186 -10.82238 -10.62438 -10.37614 -10.00221 -9.86661 -9.08803 -8.93942 -6.25372 0.48913 0.51308 0.96450 1.49931 1.62787 1.69893 1.76297 2.29792 2.34892 2.86309 3.11532 3.15822 3.32445 3.51005 3.66882 3.76022 3.86870 3.98052 3.98224 4.11729 4.20694 4.24921 4.26662 4.40751 4.43485 4.51663 4.54543 4.68842 4.74953 4.76792 4.79795 4.86227 4.90374 4.96961 5.07607 5.13168 5.17190 5.19688 5.22576 5.33548 5.39058 5.47630 5.54527 5.67888 5.72810 6.01607 6.26818 6.51350 6.64136 6.85145 7.32087 7.60954 8.50422 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.002048 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.997233 B =13670.678133 C =14005.224920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.059 4.059 3 H 0.089 0.911 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.506 6.506 7 C -0.164 4.164 8 C -0.106 4.106 9 C -0.103 4.103 10 H 0.135 0.865 11 C 0.517 3.483 12 O -0.574 6.574 13 N -0.715 5.715 14 C 0.184 3.816 15 C -0.176 4.176 16 C -0.045 4.045 17 C -0.241 4.241 18 C 0.123 3.877 19 O -0.250 6.250 20 C -0.485 4.485 21 H 0.094 0.906 22 C -0.045 4.045 23 N -0.918 5.918 24 Si 1.149 2.851 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.270 1.270 28 C -0.204 4.204 29 C -0.044 4.044 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 5.750 -23.614 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.078 4.078 3 H 0.108 0.892 4 C -0.199 4.199 5 C 0.242 3.758 6 O -0.382 6.382 7 C -0.201 4.201 8 C -0.144 4.144 9 C -0.124 4.124 10 H 0.153 0.847 11 C 0.305 3.695 12 O -0.454 6.454 13 N -0.367 5.367 14 C 0.061 3.939 15 C -0.177 4.177 16 C -0.064 4.064 17 C -0.260 4.260 18 C 0.073 3.927 19 O -0.158 6.158 20 C -0.561 4.561 21 H 0.111 0.889 22 C -0.241 4.241 23 N -0.552 5.552 24 Si 0.965 3.035 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.224 4.224 29 C -0.062 4.062 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.407 5.810 -22.751 23.523 hybrid contribution -1.157 -0.369 -0.716 1.410 sum -2.564 5.441 -23.467 24.225 Atomic orbital electron populations 1.22081 0.95782 1.01159 1.02717 1.20792 0.95763 0.99847 0.91372 0.89248 1.22418 1.05130 0.92802 0.99529 1.25404 0.72331 0.91181 0.86882 1.90418 1.33641 1.72662 1.41507 1.22323 1.05780 0.99554 0.92488 1.21565 1.01292 0.92576 0.98939 1.21479 1.04328 0.95165 0.91398 0.84686 1.20953 0.78699 0.84846 0.85051 1.90668 1.40644 1.27009 1.87037 1.46187 1.56126 1.29409 1.04958 1.19855 0.99290 0.94212 0.80578 1.19542 0.96067 1.02141 0.99976 1.20960 0.95089 0.97107 0.93195 1.21263 1.01979 1.02142 1.00650 1.19893 0.93790 0.91781 0.87256 1.83653 1.39097 1.54492 1.38519 1.22640 0.97678 1.26027 1.09734 0.88886 1.28344 1.08139 0.95000 0.92625 1.70661 1.15742 1.27754 1.41090 0.82500 0.68553 0.76379 0.76070 1.18160 1.19785 1.19565 1.20461 0.94677 1.06095 1.01139 1.20897 0.99374 0.93409 0.92520 0.91745 0.92666 0.93500 0.85188 0.89430 0.85048 0.89199 0.88357 0.91632 0.75184 0.91080 0.91125 0.84086 0.86469 0.93012 0.86677 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.31 71.98 0.60 -2.07 16 2 C -0.06 -0.72 2.33 -10.73 -0.02 -0.74 16 3 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 4 C -0.16 -1.58 5.65 30.11 0.17 -1.41 16 5 C 0.36 5.11 5.75 29.46 0.17 5.28 16 6 O -0.51 -11.68 17.89 -1.46 -0.03 -11.71 16 7 C -0.16 -1.41 6.17 30.11 0.19 -1.22 16 8 C -0.11 -0.96 4.88 30.66 0.15 -0.81 16 9 C -0.10 -1.05 2.20 -11.57 -0.03 -1.07 16 10 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 11 C 0.52 8.87 6.87 87.66 0.60 9.47 16 12 O -0.57 -14.30 13.87 -3.04 -0.04 -14.34 16 13 N -0.71 -11.52 5.42 -466.78 -2.53 -14.05 16 14 C 0.18 3.75 5.80 85.63 0.50 4.24 16 15 C -0.18 -4.49 5.25 -19.84 -0.10 -4.60 16 16 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 17 C -0.24 -9.51 9.17 22.39 0.21 -9.31 16 18 C 0.12 5.62 6.65 22.58 0.15 5.77 16 19 O -0.25 -14.13 9.16 -22.83 -0.21 -14.34 16 20 C -0.49 -27.15 9.49 67.92 0.64 -26.51 16 21 H 0.09 4.83 5.20 -2.91 -0.02 4.82 16 22 C -0.04 -2.49 5.49 84.83 0.47 -2.02 16 23 N -0.92 -55.93 13.70 21.61 0.30 -55.64 16 24 Si 1.15 46.55 29.92 68.60 2.05 48.60 16 25 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 28 C -0.20 -7.69 9.99 22.39 0.22 -7.47 16 29 C -0.04 -1.22 9.69 22.25 0.22 -1.01 16 30 H 0.06 1.36 5.82 -2.39 -0.01 1.34 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.78 5.61 -2.39 -0.01 0.77 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 0.64 7.45 -2.39 -0.02 0.62 16 38 H 0.06 0.81 6.20 -2.38 -0.01 0.79 16 39 H 0.41 5.22 7.83 -92.71 -0.73 4.50 16 40 H 0.07 1.48 8.08 -2.38 -0.02 1.46 16 41 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.12 4.85 5.64 -2.91 -0.02 4.84 16 44 H 0.26 16.58 7.97 -92.71 -0.74 15.84 16 45 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -75.93 373.55 4.20 -71.73 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.32 Total: 24.31 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.34 Total: -34.57 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -2.23 Total: -69.69 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.28 Total: -40.39 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.05 Total: 48.60 kcal Total: -75.93 4.20 -71.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.760 kcal (2) G-P(sol) polarization free energy of solvation -75.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds