Wall clock time and date at job start Tue Mar 31 2020 16:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.46497 * 119.99968 * 59.99779 * 4 2 1 6 6 C 1.50698 * 109.47490 * 85.00110 * 5 4 2 7 7 H 1.08006 * 119.99578 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00438 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00010 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00002 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47311 * 59.99950 * 10 8 6 12 12 H 1.48506 * 109.46770 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46993 * 299.99314 * 10 8 6 14 14 S 1.65601 * 119.99824 * 239.99540 * 4 2 1 15 15 O 1.42104 * 104.27577 * 206.06763 * 14 4 2 16 16 O 1.42092 * 104.27704 * 333.93115 * 14 4 2 17 17 C 1.81401 * 104.44781 * 90.00066 * 14 4 2 18 18 C 1.53002 * 109.47317 * 179.97438 * 17 14 4 19 19 H 1.09000 * 110.26188 * 60.62004 * 18 17 14 20 20 C 1.54988 * 110.30594 * 182.79973 * 18 17 14 21 21 C 1.55434 * 101.01838 * 155.05727 * 20 18 17 22 22 C 1.53856 * 102.05054 * 326.34300 * 21 20 18 23 23 C 1.53192 * 114.61687 * 151.40434 * 22 21 20 24 24 C 1.53886 * 86.91580 * 90.96798 * 23 22 21 25 25 C 1.53204 * 114.59603 * 250.64548 * 22 21 20 26 26 O 1.42626 * 108.27015 * 21.00061 * 22 21 20 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46919 * 205.00106 * 5 4 2 35 35 H 1.09001 * 109.47209 * 324.99866 * 5 4 2 36 36 H 0.96995 * 120.00262 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47251 * 299.99878 * 17 14 4 38 38 H 1.09007 * 109.46916 * 60.00020 * 17 14 4 39 39 H 1.08999 * 111.11804 * 272.99904 * 20 18 17 40 40 H 1.09005 * 111.11318 * 37.12372 * 20 18 17 41 41 H 1.08993 * 110.92375 * 208.14868 * 21 20 18 42 42 H 1.09009 * 110.91117 * 84.52342 * 21 20 18 43 43 H 1.09007 * 113.64132 * 205.47287 * 23 22 21 44 44 H 1.08998 * 113.64308 * 336.46419 * 23 22 21 45 45 H 1.08996 * 113.60137 * 270.42472 * 24 23 22 46 46 H 1.09000 * 113.59957 * 139.57450 * 24 23 22 47 47 H 1.09002 * 113.64477 * 23.52221 * 25 22 21 48 48 H 1.09005 * 113.63947 * 154.50601 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6643 -0.1900 -2.5267 6 6 2.6336 0.8906 -2.9313 7 1 3.4332 1.1763 -2.2637 8 6 2.4992 1.5153 -4.1530 9 7 1.5253 1.1678 -4.9656 10 14 3.7013 2.8544 -4.6546 11 1 5.0776 2.2978 -4.6858 12 1 3.3423 3.3618 -6.0033 13 1 3.6396 3.9677 -3.6738 14 16 2.9705 -2.0369 -1.0443 15 8 3.7315 -2.0651 -2.2440 16 8 3.6005 -1.8797 0.2196 17 6 1.7965 -3.4192 -1.0027 18 6 2.5634 -4.7358 -0.8635 19 1 3.1390 -4.7413 0.0621 20 6 1.5828 -5.9355 -0.8967 21 6 2.5190 -7.0707 -1.3976 22 6 3.4680 -6.3114 -2.3411 23 6 4.8674 -6.9222 -2.4657 24 6 4.3175 -7.7322 -3.6529 25 6 3.2694 -6.6194 -3.8287 26 8 3.4327 -4.9287 -1.9931 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.7103 -1.0074 -3.2465 35 1 0.6538 0.2180 -2.5045 36 1 1.4310 1.6070 -5.8253 37 1 1.1234 -3.2989 -0.1538 38 1 1.2177 -3.4322 -1.9263 39 1 1.1972 -6.1553 0.0988 40 1 0.7693 -5.7585 -1.6004 41 1 1.9552 -7.8291 -1.9406 42 1 3.0689 -7.5158 -0.5683 43 1 5.6355 -6.2015 -2.7466 44 1 5.1536 -7.5369 -1.6123 45 1 3.8901 -8.6927 -3.3652 46 1 5.0143 -7.8111 -4.4874 47 1 2.2732 -6.9910 -4.0689 48 1 3.5929 -5.8144 -4.4887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423675911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:14 Heat of formation + Delta-G solvation = -98.395439 kcal Electronic energy + Delta-G solvation = -28496.945203 eV Core-core repulsion = 24679.831974 eV Total energy + Delta-G solvation = -3817.113229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59478 -36.89571 -36.80264 -36.31895 -35.06871 -32.68579 -32.52067 -30.69580 -30.55048 -26.92941 -26.48273 -25.87135 -25.34282 -22.81123 -22.73433 -21.59765 -20.17518 -19.07544 -17.94336 -17.16207 -16.93518 -16.50827 -16.09854 -15.72613 -15.33210 -15.07226 -14.60891 -14.38247 -13.79133 -13.65811 -13.50932 -13.23409 -13.05548 -12.61093 -12.34725 -12.30821 -12.24187 -12.06543 -11.94665 -11.76654 -11.63522 -11.44799 -11.26777 -11.20911 -11.13735 -10.99905 -10.97025 -10.79581 -10.76733 -10.75370 -10.42773 -10.40086 -10.27709 -10.02988 -9.74961 -9.47531 -9.46059 -8.34189 -7.95120 -5.97255 -3.98084 0.93163 3.39358 3.42830 3.44606 3.50158 3.53538 4.19785 4.34553 4.36996 4.50411 4.51969 4.65110 4.66197 4.76091 4.81261 4.93987 5.10360 5.18217 5.30312 5.37038 5.40471 5.47198 5.49596 5.54945 5.63620 5.67949 5.71586 5.75104 5.76482 5.78061 5.91535 5.94333 6.01642 6.13994 6.21027 6.22576 6.30067 6.51780 6.60882 6.83263 7.02252 7.20895 7.33527 7.50708 7.73495 8.01236 8.32325 9.03089 9.64930 11.11664 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.004180 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.139923 B = 6696.399421 C = 7869.665686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.152 4.152 4 N -0.983 5.983 5 C 0.256 3.744 6 C -0.515 4.515 7 H 0.062 0.938 8 C 0.061 3.939 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.277 1.277 14 S 2.608 3.392 15 O -0.919 6.919 16 O -0.978 6.978 17 C -0.648 4.648 18 C 0.089 3.911 19 H 0.084 0.916 20 C -0.141 4.141 21 C -0.131 4.131 22 C 0.080 3.920 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.140 4.140 26 O -0.350 6.350 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -16.424 8.831 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 C -0.211 4.211 4 N -0.822 5.822 5 C 0.134 3.866 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.141 4.141 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 S 2.698 3.302 15 O -0.909 6.909 16 O -0.968 6.968 17 C -0.773 4.773 18 C 0.030 3.970 19 H 0.102 0.898 20 C -0.180 4.180 21 C -0.169 4.169 22 C 0.041 3.959 23 C -0.180 4.180 24 C -0.177 4.177 25 C -0.177 4.177 26 O -0.269 6.269 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.683 -16.250 8.577 18.452 hybrid contribution -0.295 0.395 -0.338 0.598 sum -1.978 -15.856 8.239 17.977 Atomic orbital electron populations 1.22197 0.96153 1.01293 1.02493 1.20643 0.93447 0.94904 0.86911 1.22110 1.01501 0.95467 1.02015 1.57668 1.70350 1.40621 1.13577 1.19030 0.96814 0.95178 0.75589 1.21471 1.13209 1.18809 1.01919 0.91980 1.24901 0.95599 0.97385 0.96198 1.69905 1.31517 1.42633 1.09867 0.86644 0.81911 0.81919 0.77496 1.20089 1.21362 1.20256 1.05109 0.75806 0.74941 0.74311 1.93637 1.65879 1.85171 1.46239 1.93499 1.73082 1.85444 1.44767 1.30997 1.18156 1.16539 1.11601 1.22557 0.90674 0.93140 0.90650 0.89819 1.23282 0.98279 0.93556 1.02855 1.22877 0.96954 0.98017 0.99008 1.23206 0.96067 0.81425 0.95227 1.23354 0.96983 0.99001 0.98667 1.22692 0.98942 0.97233 0.98845 1.23320 0.99600 0.98816 0.96013 1.88577 1.65575 1.24743 1.48035 0.93385 0.92430 0.91118 0.90174 0.89800 0.93652 0.92694 0.94582 0.94486 0.92845 0.84721 0.84479 0.89570 0.89709 0.89599 0.90030 0.88819 0.91118 0.90185 0.90711 0.91090 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.16 37.16 0.34 -2.06 16 2 C 0.15 2.62 3.19 -67.93 -0.22 2.40 16 3 C -0.15 -2.80 8.21 37.16 0.30 -2.50 16 4 N -0.98 -20.36 2.66 -108.57 -0.29 -20.65 16 5 C 0.26 6.31 4.58 -5.20 -0.02 6.28 16 6 C -0.51 -14.30 7.53 -34.44 -0.26 -14.56 16 7 H 0.06 1.74 7.07 -52.48 -0.37 1.37 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 S 2.61 52.66 5.19 -107.50 -0.56 52.10 16 15 O -0.92 -22.88 16.42 -60.84 -1.00 -23.88 16 16 O -0.98 -20.76 16.57 -57.54 -0.95 -21.72 16 17 C -0.65 -9.47 5.93 37.16 0.22 -9.25 16 18 C 0.09 1.23 3.48 -25.68 -0.09 1.14 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.14 -1.42 6.58 -24.39 -0.16 -1.58 16 21 C -0.13 -1.22 6.13 -24.99 -0.15 -1.37 16 22 C 0.08 1.00 1.65 -89.97 -0.15 0.85 16 23 C -0.14 -1.56 7.60 -26.17 -0.20 -1.76 16 24 C -0.14 -1.29 7.88 -25.81 -0.20 -1.50 16 25 C -0.14 -1.62 7.51 -26.17 -0.20 -1.81 16 26 O -0.35 -5.75 10.01 -38.44 -0.38 -6.14 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.16 6.69 -51.93 -0.35 0.82 16 30 H 0.08 1.31 6.87 -51.93 -0.36 0.96 16 31 H 0.08 1.73 6.65 -51.93 -0.35 1.39 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 34 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 35 H 0.04 0.91 6.45 -51.93 -0.33 0.58 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.52 8.14 -51.92 -0.42 1.10 16 38 H 0.14 1.97 8.14 -51.92 -0.42 1.54 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.09 0.65 7.85 -51.93 -0.41 0.24 16 42 H 0.08 0.65 8.00 -51.92 -0.42 0.24 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.72 8.00 -51.93 -0.42 0.30 16 48 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -34.41 386.93 -10.94 -45.35 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.42 Total: 1.62 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -0.88 Total: -24.10 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.45 Total: -46.17 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -2.34 Total: -51.73 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.56 Total: 52.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.41 -10.94 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423675911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.045 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds