Wall clock time and date at job start Tue Mar 31 2020 16:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.46497 * 119.99968 * 59.99779 * 4 2 1 6 6 C 1.50698 * 109.47490 * 85.00110 * 5 4 2 7 7 H 1.08006 * 119.99578 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00438 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00010 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00002 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47311 * 59.99950 * 10 8 6 12 12 H 1.48506 * 109.46770 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46993 * 299.99314 * 10 8 6 14 14 S 1.65601 * 119.99824 * 239.99540 * 4 2 1 15 15 O 1.42104 * 104.27577 * 206.06763 * 14 4 2 16 16 O 1.42092 * 104.27704 * 333.93115 * 14 4 2 17 17 C 1.81401 * 104.44781 * 90.00066 * 14 4 2 18 18 C 1.53002 * 109.47317 * 179.97438 * 17 14 4 19 19 H 1.09000 * 110.26188 * 60.62004 * 18 17 14 20 20 C 1.54988 * 110.30594 * 182.79973 * 18 17 14 21 21 C 1.55434 * 101.01838 * 155.05727 * 20 18 17 22 22 C 1.53856 * 102.05054 * 326.34300 * 21 20 18 23 23 C 1.53192 * 114.61687 * 151.40434 * 22 21 20 24 24 C 1.53886 * 86.91580 * 90.96798 * 23 22 21 25 25 C 1.53204 * 114.59603 * 250.64548 * 22 21 20 26 26 O 1.42626 * 108.27015 * 21.00061 * 22 21 20 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46919 * 205.00106 * 5 4 2 35 35 H 1.09001 * 109.47209 * 324.99866 * 5 4 2 36 36 H 0.96995 * 120.00262 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47251 * 299.99878 * 17 14 4 38 38 H 1.09007 * 109.46916 * 60.00020 * 17 14 4 39 39 H 1.08999 * 111.11804 * 272.99904 * 20 18 17 40 40 H 1.09005 * 111.11318 * 37.12372 * 20 18 17 41 41 H 1.08993 * 110.92375 * 208.14868 * 21 20 18 42 42 H 1.09009 * 110.91117 * 84.52342 * 21 20 18 43 43 H 1.09007 * 113.64132 * 205.47287 * 23 22 21 44 44 H 1.08998 * 113.64308 * 336.46419 * 23 22 21 45 45 H 1.08996 * 113.60137 * 270.42472 * 24 23 22 46 46 H 1.09000 * 113.59957 * 139.57450 * 24 23 22 47 47 H 1.09002 * 113.64477 * 23.52221 * 25 22 21 48 48 H 1.09005 * 113.63947 * 154.50601 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6643 -0.1900 -2.5267 6 6 2.6336 0.8906 -2.9313 7 1 3.4332 1.1763 -2.2637 8 6 2.4992 1.5153 -4.1530 9 7 1.5253 1.1678 -4.9656 10 14 3.7013 2.8544 -4.6546 11 1 5.0776 2.2978 -4.6858 12 1 3.3423 3.3618 -6.0033 13 1 3.6396 3.9677 -3.6738 14 16 2.9705 -2.0369 -1.0443 15 8 3.7315 -2.0651 -2.2440 16 8 3.6005 -1.8797 0.2196 17 6 1.7965 -3.4192 -1.0027 18 6 2.5634 -4.7358 -0.8635 19 1 3.1390 -4.7413 0.0621 20 6 1.5828 -5.9355 -0.8967 21 6 2.5190 -7.0707 -1.3976 22 6 3.4680 -6.3114 -2.3411 23 6 4.8674 -6.9222 -2.4657 24 6 4.3175 -7.7322 -3.6529 25 6 3.2694 -6.6194 -3.8287 26 8 3.4327 -4.9287 -1.9931 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.7103 -1.0074 -3.2465 35 1 0.6538 0.2180 -2.5045 36 1 1.4310 1.6070 -5.8253 37 1 1.1234 -3.2989 -0.1538 38 1 1.2177 -3.4322 -1.9263 39 1 1.1972 -6.1553 0.0988 40 1 0.7693 -5.7585 -1.6004 41 1 1.9552 -7.8291 -1.9406 42 1 3.0689 -7.5158 -0.5683 43 1 5.6355 -6.2015 -2.7466 44 1 5.1536 -7.5369 -1.6123 45 1 3.8901 -8.6927 -3.3652 46 1 5.0143 -7.8111 -4.4874 47 1 2.2732 -6.9910 -4.0689 48 1 3.5929 -5.8144 -4.4887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423675911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:13 Heat of formation + Delta-G solvation = -122.037535 kcal Electronic energy + Delta-G solvation = -28497.970401 eV Core-core repulsion = 24679.831974 eV Total energy + Delta-G solvation = -3818.138427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49563 -38.44378 -38.02001 -37.76580 -36.78205 -34.76674 -33.50794 -32.20352 -31.67915 -28.85932 -27.86250 -26.74024 -26.29610 -24.73756 -23.60544 -22.60200 -21.62803 -19.97289 -19.55974 -18.65958 -18.55558 -18.04248 -17.27297 -17.02911 -16.94547 -16.38549 -15.92798 -15.63863 -15.27881 -14.92103 -14.73455 -14.63589 -14.18746 -14.07249 -13.71624 -13.62063 -13.43019 -13.30012 -13.16066 -12.99339 -12.96322 -12.87585 -12.80006 -12.72209 -12.70194 -12.56080 -12.37524 -12.13453 -12.07067 -12.04124 -11.85508 -11.64321 -11.53212 -11.47015 -11.23507 -11.21112 -10.52597 -10.45038 -9.67100 -8.15080 -6.21927 -0.61226 1.36547 1.40592 1.47101 1.88950 2.42959 2.59455 3.00827 3.15779 3.28228 3.38967 3.51919 3.57360 3.72531 3.87263 3.89426 3.91132 3.97242 4.16094 4.26480 4.34669 4.40427 4.43225 4.53456 4.60353 4.75082 4.79031 4.82379 4.86853 4.92218 4.96074 4.96711 5.01036 5.03577 5.12992 5.15406 5.16735 5.26190 5.28907 5.41468 5.42395 5.59967 5.70190 5.83168 6.06525 6.09911 6.21388 6.83707 7.43546 8.92502 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.004180 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.139923 B = 6696.399421 C = 7869.665686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.990 5.990 5 C 0.274 3.726 6 C -0.527 4.527 7 H 0.048 0.952 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.945 3.055 11 H -0.284 1.284 12 H -0.277 1.277 13 H -0.264 1.264 14 S 2.595 3.405 15 O -0.985 6.985 16 O -0.997 6.997 17 C -0.611 4.611 18 C 0.070 3.930 19 H 0.091 0.909 20 C -0.132 4.132 21 C -0.122 4.122 22 C 0.061 3.939 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.151 4.151 26 O -0.395 6.395 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.010 0.990 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.181 0.819 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -18.691 10.916 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 C -0.211 4.211 4 N -0.828 5.828 5 C 0.151 3.849 6 C -0.566 4.566 7 H 0.066 0.934 8 C -0.187 4.187 9 N -0.567 5.567 10 Si 0.771 3.229 11 H -0.210 1.210 12 H -0.202 1.202 13 H -0.188 1.188 14 S 2.693 3.307 15 O -0.975 6.975 16 O -0.988 6.988 17 C -0.743 4.743 18 C 0.011 3.989 19 H 0.109 0.891 20 C -0.171 4.171 21 C -0.159 4.159 22 C 0.022 3.978 23 C -0.188 4.188 24 C -0.159 4.159 25 C -0.189 4.189 26 O -0.316 6.316 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.198 0.802 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.542 -18.446 10.680 21.607 hybrid contribution 0.318 1.027 -0.924 1.418 sum -3.225 -17.419 9.756 20.224 Atomic orbital electron populations 1.22141 0.93346 1.03066 1.02842 1.20992 0.95751 0.94041 0.86173 1.22093 0.99904 0.96645 1.02430 1.57495 1.70265 1.42122 1.12938 1.18536 0.95896 0.93352 0.77165 1.21767 1.13310 1.19611 1.01919 0.93377 1.25621 0.97193 0.99507 0.96368 1.69986 1.32793 1.43731 1.10195 0.85810 0.79300 0.79901 0.77906 1.21013 1.20160 1.18841 1.05085 0.76539 0.76192 0.72854 1.93561 1.68984 1.86472 1.48472 1.93458 1.74514 1.86274 1.44558 1.30670 1.16383 1.13252 1.14020 1.22930 0.91740 0.93863 0.90367 0.89114 1.23320 0.97375 0.91426 1.04935 1.22929 0.96231 0.97865 0.98907 1.23669 0.97562 0.80445 0.96127 1.23374 0.95991 0.99027 1.00362 1.22689 0.97805 0.97461 0.97970 1.23345 1.01180 0.98913 0.95417 1.88570 1.66527 1.27426 1.49036 0.90963 0.89335 0.93413 0.88350 0.92635 0.89910 0.95177 0.97155 0.94534 0.92671 0.80185 0.83941 0.86295 0.89391 0.87192 0.88224 0.91661 0.89021 0.87140 0.90594 0.89463 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.16 71.98 0.66 -3.54 16 2 C 0.14 4.69 3.19 44.99 0.14 4.84 16 3 C -0.15 -5.63 8.21 71.98 0.59 -5.04 16 4 N -0.99 -41.74 2.66 -497.42 -1.32 -43.06 16 5 C 0.27 14.07 4.58 85.63 0.39 14.46 16 6 C -0.53 -30.57 7.53 25.60 0.19 -30.37 16 7 H 0.05 2.85 7.07 -2.91 -0.02 2.83 16 8 C 0.01 0.68 5.46 84.65 0.46 1.14 16 9 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 10 Si 0.95 46.55 29.54 68.60 2.03 48.58 16 11 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 14 S 2.59 107.14 5.19 -56.49 -0.29 106.84 16 15 O -0.98 -52.25 16.42 -124.50 -2.04 -54.29 16 16 O -1.00 -42.85 16.57 -127.65 -2.12 -44.97 16 17 C -0.61 -16.72 5.93 71.98 0.43 -16.29 16 18 C 0.07 1.79 3.48 31.28 0.11 1.90 16 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 20 C -0.13 -2.10 6.58 32.11 0.21 -1.89 16 21 C -0.12 -1.79 6.13 31.72 0.19 -1.60 16 22 C 0.06 1.44 1.65 -10.37 -0.02 1.43 16 23 C -0.15 -3.21 7.60 30.96 0.24 -2.97 16 24 C -0.12 -2.06 7.88 31.19 0.25 -1.82 16 25 C -0.15 -3.44 7.51 30.96 0.23 -3.21 16 26 O -0.40 -13.12 10.01 -145.91 -1.46 -14.58 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.52 6.69 -2.39 -0.02 1.50 16 30 H 0.10 3.04 6.87 -2.39 -0.02 3.03 16 31 H 0.05 2.35 6.65 -2.39 -0.02 2.34 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.03 1.21 7.93 -2.39 -0.02 1.19 16 34 H 0.01 0.59 7.61 -2.38 -0.02 0.57 16 35 H 0.04 1.87 6.45 -2.39 -0.02 1.85 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.18 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.36 8.05 -2.38 -0.02 1.35 16 41 H 0.11 1.11 7.85 -2.39 -0.02 1.10 16 42 H 0.10 1.12 8.00 -2.38 -0.02 1.10 16 43 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 44 H 0.09 1.51 8.00 -2.39 -0.02 1.50 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.63 8.00 -2.39 -0.02 1.61 16 48 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -81.08 386.93 0.07 -81.01 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.92 Total: 18.74 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 4.08 Total: -42.96 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -1.04 Total: -98.36 kcal Atomic # 8 Polarization: -108.23 SS G_CDS: -5.62 Total: -113.85 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 107.14 SS G_CDS: -0.29 Total: 106.84 kcal Total: -81.08 0.07 -81.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423675911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.031 kcal (2) G-P(sol) polarization free energy of solvation -81.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds