Wall clock time and date at job start Tue Mar 31 2020 17:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47530 * 2 1 4 4 C 1.53085 * 109.48511 * 120.02685 * 2 1 3 5 5 C 1.53170 * 109.16637 * 177.60323 * 4 2 1 6 6 H 1.09008 * 109.54541 * 62.97848 * 5 4 2 7 7 C 1.53001 * 109.54668 * 183.15001 * 5 4 2 8 8 S 1.81403 * 109.47239 * 184.99703 * 7 5 4 9 9 O 1.42105 * 110.53780 * 68.38279 * 8 7 5 10 10 O 1.42098 * 110.54629 * 291.63191 * 8 7 5 11 11 N 1.65596 * 104.44782 * 180.02562 * 8 7 5 12 12 C 1.46929 * 120.62869 * 90.00865 * 11 8 7 13 13 C 1.53195 * 108.77265 * 233.62528 * 12 11 8 14 14 C 1.53034 * 109.31487 * 305.36761 * 13 12 11 15 15 C 1.50702 * 109.45955 * 181.38448 * 14 13 12 16 16 H 1.07991 * 120.00110 * 268.29229 * 15 14 13 17 17 C 1.37883 * 119.99849 * 88.29766 * 15 14 13 18 18 N 1.31512 * 119.99971 * 353.64004 * 17 15 14 19 19 Si 1.86801 * 119.99707 * 173.36338 * 17 15 14 20 20 H 1.48502 * 109.47465 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46850 * 119.99934 * 19 17 15 22 22 H 1.48498 * 109.47357 * 239.99621 * 19 17 15 23 23 C 1.53038 * 109.53278 * 61.36781 * 14 13 12 24 24 C 1.46930 * 120.63402 * 270.02151 * 11 8 7 25 25 C 1.53177 * 109.03808 * 303.02154 * 5 4 2 26 26 C 1.53092 * 109.16327 * 56.97698 * 25 5 4 27 27 O 1.42900 * 109.48857 * 239.97780 * 2 1 3 28 28 H 1.09003 * 109.47011 * 299.96666 * 1 2 3 29 29 H 1.08991 * 109.47604 * 59.97331 * 1 2 3 30 30 H 1.09004 * 109.46475 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.52239 * 57.69839 * 4 2 1 32 32 H 1.08997 * 109.52577 * 297.51119 * 4 2 1 33 33 H 1.09006 * 109.46712 * 65.00853 * 7 5 4 34 34 H 1.08991 * 109.47497 * 305.00068 * 7 5 4 35 35 H 1.08996 * 109.58883 * 113.84404 * 12 11 8 36 36 H 1.08997 * 109.70247 * 353.48245 * 12 11 8 37 37 H 1.09002 * 109.49679 * 185.41020 * 13 12 11 38 38 H 1.09005 * 109.52005 * 65.33088 * 13 12 11 39 39 H 1.09003 * 109.45682 * 301.35450 * 14 13 12 40 40 H 0.97003 * 120.00426 * 354.28074 * 18 17 15 41 41 H 1.08998 * 109.49447 * 58.57941 * 23 14 13 42 42 H 1.08993 * 109.50216 * 178.67815 * 23 14 13 43 43 H 1.08993 * 109.59019 * 246.15720 * 24 11 8 44 44 H 1.09004 * 109.58527 * 6.45008 * 24 11 8 45 45 H 1.09000 * 109.52336 * 176.88386 * 25 5 4 46 46 H 1.08997 * 109.52096 * 297.07042 * 25 5 4 47 47 H 1.08994 * 109.48282 * 182.40714 * 26 25 5 48 48 H 1.09005 * 109.47642 * 62.37379 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7222 1.2495 5 6 3.5711 -0.7705 1.2122 6 1 3.9689 0.2440 1.2426 7 6 4.0879 -1.5590 2.4173 8 16 5.9003 -1.4902 2.4528 9 8 6.3435 -0.1729 2.7488 10 8 6.4485 -2.2203 1.3640 11 7 6.3211 -2.3731 3.7891 12 6 6.5651 -3.8183 3.6850 13 6 5.6880 -4.5416 4.7119 14 6 5.9506 -3.9583 6.1021 15 6 5.1144 -4.6904 7.1199 16 1 4.1326 -4.3221 7.3778 17 6 5.6031 -5.8306 7.7219 18 7 6.7425 -6.3498 7.3198 19 14 4.6505 -6.6332 9.1140 20 1 3.4127 -5.8568 9.3790 21 1 4.2906 -8.0221 8.7311 22 1 5.4907 -6.6593 10.3382 23 6 5.5812 -2.4732 6.1121 24 6 6.4573 -1.7264 5.1013 25 6 4.0179 -1.4595 -0.0808 26 6 3.4309 -0.7089 -1.2790 27 8 2.0068 -0.6740 -1.1664 28 1 -0.3633 0.5133 0.8903 29 1 -0.3634 0.5142 -0.8896 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6446 -1.7375 1.2708 32 1 1.7148 -0.1844 2.1398 33 1 3.7653 -2.5971 2.3376 34 1 3.6898 -1.1240 3.3339 35 1 7.6151 -4.0273 3.8896 36 1 6.3127 -4.1623 2.6820 37 1 5.9291 -5.6046 4.7118 38 1 4.6377 -4.4066 4.4532 39 1 7.0060 -4.0716 6.3500 40 1 7.1977 -5.9808 6.5467 41 1 4.5321 -2.3575 5.8398 42 1 5.7462 -2.0638 7.1086 43 1 7.4985 -1.7649 5.4214 44 1 6.1344 -0.6876 5.0320 45 1 5.1062 -1.4490 -0.1419 46 1 3.6619 -2.4897 -0.0864 47 1 3.7104 -1.2197 -2.2004 48 1 3.8193 0.3095 -1.2956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423965062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:28 Heat of formation + Delta-G solvation = -146.365818 kcal Electronic energy + Delta-G solvation = -28069.554874 eV Core-core repulsion = 24250.361494 eV Total energy + Delta-G solvation = -3819.193380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.89401 -37.99633 -37.11118 -35.93752 -35.29159 -33.71672 -33.08793 -30.82683 -30.38464 -29.32308 -27.33703 -25.41800 -23.81727 -22.63319 -22.55728 -22.03595 -20.58078 -19.69859 -18.59066 -17.73805 -16.81694 -16.63307 -16.36406 -16.19727 -15.92278 -15.16537 -14.78173 -14.35574 -14.19278 -13.84552 -13.80329 -13.65148 -13.33649 -13.07468 -13.03024 -12.86325 -12.65309 -12.56142 -12.33702 -12.16005 -11.98638 -11.67800 -11.63102 -11.45885 -11.42305 -11.33376 -11.26475 -10.82944 -10.72761 -10.66168 -10.56845 -10.35718 -10.18030 -9.79432 -9.74314 -9.35031 -8.91223 -8.46095 -8.21384 -6.39906 -4.12269 0.30577 2.73332 3.40208 3.42535 3.46737 3.55991 3.80528 4.07275 4.19049 4.30943 4.40382 4.48156 4.60668 4.83665 4.86316 4.91907 4.94718 5.07547 5.15260 5.21249 5.26699 5.34182 5.36834 5.47688 5.48365 5.59435 5.66344 5.68838 5.73513 5.81000 5.83952 5.85987 5.93984 5.98336 6.06360 6.14844 6.27502 6.43221 6.68288 6.79419 6.89490 6.94697 7.03851 7.38216 7.53824 8.17637 8.40134 8.82801 9.59759 10.98248 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.003199 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.349960 B = 8751.454963 C = 9636.050326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.077 4.077 6 H 0.083 0.917 7 C -0.628 4.628 8 S 2.607 3.393 9 O -0.962 6.962 10 O -0.957 6.957 11 N -0.991 5.991 12 C 0.117 3.883 13 C -0.124 4.124 14 C 0.032 3.968 15 C -0.594 4.594 16 H 0.048 0.952 17 C 0.021 3.979 18 N -0.912 5.912 19 Si 1.068 2.932 20 H -0.290 1.290 21 H -0.289 1.289 22 H -0.287 1.287 23 C -0.118 4.118 24 C 0.119 3.881 25 C -0.181 4.181 26 C 0.065 3.935 27 O -0.380 6.380 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.272 0.728 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 12.351 -13.675 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.097 4.097 6 H 0.101 0.899 7 C -0.757 4.757 8 S 2.700 3.300 9 O -0.952 6.952 10 O -0.947 6.947 11 N -0.830 5.830 12 C -0.007 4.007 13 C -0.163 4.163 14 C 0.013 3.987 15 C -0.632 4.632 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.548 5.548 19 Si 0.897 3.103 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.213 1.213 23 C -0.157 4.157 24 C -0.006 4.006 25 C -0.219 4.219 26 C -0.012 4.012 27 O -0.299 6.299 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.604 11.463 -13.271 19.114 hybrid contribution -0.534 0.966 -0.455 1.194 sum -8.138 12.430 -13.725 20.226 Atomic orbital electron populations 1.21767 0.92861 1.03124 1.02473 1.22138 0.95251 0.95041 0.85031 0.92290 1.22257 0.93849 1.02753 0.98743 1.20918 0.97747 0.98838 0.92181 0.89866 1.30792 1.28341 1.10051 1.06482 1.05056 0.77503 0.73889 0.73514 1.93566 1.79237 1.38320 1.84118 1.93558 1.75808 1.72708 1.52640 1.57550 1.83332 1.19000 1.23097 1.21642 1.01022 0.77893 1.00170 1.22174 0.97651 0.99691 0.96804 1.18807 0.97705 0.90209 0.91951 1.21983 1.03959 1.12059 1.25246 0.93384 1.25778 0.96762 0.94887 1.00930 1.70732 1.15720 1.42239 1.26107 0.83564 0.75087 0.75746 0.75897 1.21620 1.21545 1.21282 1.21971 0.97942 0.98711 0.97103 1.21589 1.01345 0.95442 0.82225 1.22716 1.02959 1.01613 0.94622 1.22540 0.80821 0.99604 0.98243 1.87933 1.21031 1.78008 1.42925 0.90980 0.91789 0.91664 0.90285 0.90325 0.84686 0.84798 0.91496 0.90586 0.91567 0.93368 0.94756 0.91717 0.93198 0.91694 0.91416 0.90565 0.89053 0.89609 0.88206 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.57 37.16 0.36 -0.72 16 2 C 0.08 0.75 3.26 -26.69 -0.09 0.66 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.27 4.70 -26.60 -0.13 -1.39 16 5 C -0.08 -0.80 2.27 -90.44 -0.21 -1.01 16 6 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 7 C -0.63 -7.07 5.62 37.16 0.21 -6.86 16 8 S 2.61 37.86 5.07 -107.50 -0.55 37.31 16 9 O -0.96 -16.06 16.73 -57.54 -0.96 -17.03 16 10 O -0.96 -15.58 14.56 -57.54 -0.84 -16.42 16 11 N -0.99 -15.94 3.22 -113.52 -0.37 -16.30 16 12 C 0.12 2.01 6.31 -3.71 -0.02 1.99 16 13 C -0.12 -2.49 5.24 -26.61 -0.14 -2.63 16 14 C 0.03 0.73 1.70 -91.73 -0.16 0.57 16 15 C -0.59 -15.53 8.30 -34.44 -0.29 -15.81 16 16 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 17 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 18 N -0.91 -26.18 13.55 55.43 0.75 -25.43 16 19 Si 1.07 24.29 29.91 -169.99 -5.08 19.21 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -2.22 5.34 -26.61 -0.14 -2.36 16 24 C 0.12 1.95 6.32 -3.71 -0.02 1.92 16 25 C -0.18 -1.94 5.02 -26.59 -0.13 -2.07 16 26 C 0.06 0.61 6.84 37.21 0.25 0.87 16 27 O -0.38 -4.08 10.41 -35.23 -0.37 -4.45 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.13 1.44 8.14 -51.92 -0.42 1.01 16 34 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.17 7.10 -51.93 -0.37 0.80 16 37 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.85 6.98 -51.93 -0.36 0.49 16 40 H 0.27 7.67 6.39 -40.82 -0.26 7.41 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.10 7.10 -51.93 -0.37 0.73 16 45 H 0.09 1.04 5.85 -51.93 -0.30 0.74 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -31.80 378.08 -10.77 -42.58 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.46 Total: 1.20 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -0.60 Total: -26.38 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.39 Total: -41.73 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.17 Total: -37.89 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.21 kcal Atomic # 16 Polarization: 37.86 SS G_CDS: -0.55 Total: 37.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.80 -10.77 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423965062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.791 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds