Wall clock time and date at job start Tue Mar 31 2020 17:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47622 * 2 1 4 4 C 1.53093 * 109.48335 * 239.96209 * 2 1 3 5 5 C 1.53173 * 109.16463 * 182.40881 * 4 2 1 6 6 H 1.09005 * 109.61680 * 297.06774 * 5 4 2 7 7 C 1.52996 * 109.54156 * 176.84960 * 5 4 2 8 8 S 1.81408 * 109.46759 * 175.44444 * 7 5 4 9 9 O 1.42095 * 110.54317 * 68.37535 * 8 7 5 10 10 O 1.42099 * 110.54002 * 291.61751 * 8 7 5 11 11 N 1.65604 * 104.44743 * 179.97438 * 8 7 5 12 12 C 1.46928 * 120.63239 * 89.99836 * 11 8 7 13 13 C 1.53187 * 108.77623 * 126.41216 * 12 11 8 14 14 C 1.53036 * 109.33909 * 54.61900 * 13 12 11 15 15 C 1.50704 * 109.46219 * 178.62978 * 14 13 12 16 16 H 1.07994 * 119.99813 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47049 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47064 * 119.99886 * 19 17 15 22 22 H 1.48490 * 109.47242 * 240.00354 * 19 17 15 23 23 C 1.53042 * 109.54058 * 298.68652 * 14 13 12 24 24 C 1.46927 * 120.63146 * 270.01894 * 11 8 7 25 25 C 1.53174 * 109.03768 * 56.97878 * 5 4 2 26 26 C 1.53097 * 109.16252 * 303.02292 * 25 5 4 27 27 O 1.42894 * 109.41599 * 57.60699 * 26 25 5 28 28 H 1.08994 * 109.47651 * 299.98014 * 1 2 3 29 29 H 1.09000 * 109.47048 * 59.98205 * 1 2 3 30 30 H 1.09008 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.52174 * 62.50121 * 4 2 1 32 32 H 1.09000 * 109.52255 * 302.31635 * 4 2 1 33 33 H 1.08995 * 109.47750 * 55.44134 * 7 5 4 34 34 H 1.08996 * 109.47144 * 295.43727 * 7 5 4 35 35 H 1.09000 * 109.58414 * 6.62382 * 12 11 8 36 36 H 1.08999 * 109.58551 * 246.20307 * 12 11 8 37 37 H 1.09002 * 109.49796 * 174.58834 * 13 12 11 38 38 H 1.09000 * 109.49812 * 294.65558 * 13 12 11 39 39 H 1.08998 * 109.46343 * 58.67009 * 14 13 12 40 40 H 0.97002 * 119.99765 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46473 * 301.36154 * 23 14 13 42 42 H 1.09000 * 109.52301 * 181.30261 * 23 14 13 43 43 H 1.08999 * 109.58621 * 353.37928 * 24 11 8 44 44 H 1.09005 * 109.58884 * 113.79504 * 24 11 8 45 45 H 1.08999 * 109.52470 * 62.92686 * 25 5 4 46 46 H 1.08997 * 109.52267 * 183.11373 * 25 5 4 47 47 H 1.09006 * 109.47998 * 177.59197 * 26 25 5 48 48 H 1.09000 * 109.47687 * 297.61965 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9703 0.2429 -1.2416 7 6 4.0877 -1.5598 -2.4169 8 16 5.9007 -1.5022 -2.4449 9 8 6.4398 -2.2385 -1.3558 10 8 6.3533 -0.1870 -2.7358 11 7 6.3214 -2.3845 -3.7817 12 6 6.4674 -1.7353 -5.0917 13 6 7.8481 -2.0773 -5.6603 14 6 8.0219 -3.5975 -5.6894 15 6 9.3661 -3.9380 -6.2796 16 1 10.0300 -3.1494 -6.6013 17 6 9.7486 -5.2565 -6.4080 18 7 8.9403 -6.2169 -6.0158 19 14 11.4145 -5.6786 -7.1403 20 1 12.1285 -4.4271 -7.5001 21 1 12.2151 -6.4360 -6.1450 22 1 11.2245 -6.5080 -8.3572 23 6 7.9350 -4.1500 -4.2649 24 6 6.5554 -3.8315 -3.6805 25 6 4.0176 -1.4600 0.0812 26 6 3.4306 -0.7090 1.2792 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7149 -0.1847 -2.1398 32 1 1.6444 -1.7377 -1.2707 33 1 3.6960 -1.1201 -3.3341 34 1 3.7583 -2.5960 -2.3412 35 1 6.3771 -0.6552 -4.9763 36 1 5.6935 -2.0986 -5.7678 37 1 7.9328 -1.6820 -6.6726 38 1 8.6205 -1.6349 -5.0311 39 1 7.2349 -4.0414 -6.2991 40 1 9.2093 -7.1444 -6.1065 41 1 8.7066 -3.6885 -3.6486 42 1 8.0819 -5.2299 -4.2834 43 1 6.5230 -4.1345 -2.6339 44 1 5.7886 -4.3658 -4.2415 45 1 3.6614 -2.4901 0.0869 46 1 5.1059 -1.4497 0.1423 47 1 3.7099 -1.2199 2.2008 48 1 3.8192 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423965071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:36 Heat of formation + Delta-G solvation = -139.396605 kcal Electronic energy + Delta-G solvation = -27815.098697 eV Core-core repulsion = 23996.207525 eV Total energy + Delta-G solvation = -3818.891173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.90270 -37.72608 -36.99626 -35.81695 -35.27282 -33.43623 -33.10256 -30.88246 -30.06992 -29.30593 -27.35395 -25.76382 -23.80047 -22.54699 -22.33167 -22.03933 -20.56275 -19.49872 -18.34965 -17.46138 -16.69758 -16.46007 -16.26669 -16.06700 -15.83776 -15.16328 -14.78184 -14.55621 -14.31949 -14.04065 -13.52025 -13.35080 -13.08758 -12.90485 -12.79836 -12.78878 -12.67022 -12.54311 -12.30076 -12.04697 -11.91830 -11.88015 -11.49226 -11.47024 -11.35846 -11.24729 -10.95743 -10.86937 -10.69577 -10.59894 -10.40868 -10.33215 -10.03987 -9.75558 -9.54557 -9.18903 -8.95504 -8.40720 -8.24817 -6.00757 -4.06465 0.37656 2.86197 3.28970 3.37418 3.41507 3.46022 3.90342 4.09199 4.21316 4.32548 4.42791 4.43137 4.59700 4.83053 4.86390 4.92753 5.01026 5.12662 5.18026 5.22300 5.29248 5.31705 5.37006 5.43915 5.47764 5.63559 5.66879 5.75340 5.80590 5.83408 5.84071 5.97177 6.08730 6.10542 6.32744 6.43876 6.48803 6.73283 6.92111 6.93963 7.09337 7.23987 7.43784 7.72660 7.96886 8.08794 8.43801 8.97354 9.58486 11.04850 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.002631 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.326168 B =10639.912039 C =10753.135946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.059 0.941 4 C -0.136 4.136 5 C -0.078 4.078 6 H 0.084 0.916 7 C -0.632 4.632 8 S 2.603 3.397 9 O -0.953 6.953 10 O -0.961 6.961 11 N -0.991 5.991 12 C 0.118 3.882 13 C -0.120 4.120 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.120 4.120 24 C 0.115 3.885 25 C -0.182 4.182 26 C 0.064 3.936 27 O -0.380 6.380 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.040 0.960 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 10.599 10.200 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.077 0.923 4 C -0.175 4.175 5 C -0.097 4.097 6 H 0.102 0.898 7 C -0.760 4.760 8 S 2.696 3.304 9 O -0.943 6.943 10 O -0.951 6.951 11 N -0.830 5.830 12 C -0.007 4.007 13 C -0.159 4.159 14 C 0.031 3.969 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.159 4.159 24 C -0.009 4.009 25 C -0.220 4.220 26 C -0.012 4.012 27 O -0.299 6.299 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.101 10.740 10.926 22.226 hybrid contribution 0.502 -0.539 -1.033 1.269 sum -15.599 10.201 9.893 21.101 Atomic orbital electron populations 1.21765 0.92912 1.03052 1.02469 1.22138 0.95202 0.95106 0.85081 0.92264 1.22252 0.93960 1.02592 0.98710 1.20915 0.97580 0.98976 0.92273 0.89806 1.30838 1.29138 1.09695 1.06292 1.05164 0.77289 0.74051 0.73849 1.93563 1.75782 1.72304 1.52668 1.93561 1.78700 1.38668 1.84166 1.57577 1.82858 1.19333 1.23263 1.21555 0.99891 0.96219 0.83013 1.21946 0.93871 1.00794 0.99313 1.18616 0.97057 0.88572 0.92673 1.21264 1.01828 0.91856 1.39958 0.92632 1.24967 0.97057 0.96552 0.95489 1.69850 1.36002 0.99541 1.47706 0.86561 0.84373 0.78375 0.78826 1.19848 1.21070 1.21116 1.21954 0.91577 1.04657 0.97762 1.21742 1.00818 0.77347 1.00968 1.22720 1.03152 1.01523 0.94559 1.22551 0.80704 0.99677 0.98311 1.87929 1.21132 1.77990 1.42876 0.91776 0.91031 0.91716 0.90428 0.90399 0.85059 0.84920 0.90457 0.92172 0.92177 0.92736 0.95489 0.93071 0.94101 0.87848 0.90561 0.92305 0.89643 0.88894 0.88156 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.56 37.16 0.36 -0.63 16 2 C 0.08 0.70 3.26 -26.68 -0.09 0.61 16 3 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.14 -1.15 4.70 -26.59 -0.13 -1.28 16 5 C -0.08 -0.78 2.28 -90.44 -0.21 -0.98 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 7 C -0.63 -6.54 5.63 37.16 0.21 -6.33 16 8 S 2.60 39.03 5.10 -107.50 -0.55 38.48 16 9 O -0.95 -16.53 14.41 -57.54 -0.83 -17.36 16 10 O -0.96 -16.79 16.59 -57.54 -0.95 -17.74 16 11 N -0.99 -16.52 3.22 -113.53 -0.37 -16.89 16 12 C 0.12 1.96 6.43 -3.71 -0.02 1.94 16 13 C -0.12 -2.43 5.30 -26.62 -0.14 -2.58 16 14 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 15 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.68 11.31 55.43 0.63 -24.06 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.12 -2.75 5.15 -26.62 -0.14 -2.88 16 24 C 0.12 2.11 6.43 -3.72 -0.02 2.08 16 25 C -0.18 -1.92 5.00 -26.59 -0.13 -2.06 16 26 C 0.06 0.60 6.84 37.21 0.25 0.86 16 27 O -0.38 -3.96 10.41 -35.23 -0.37 -4.33 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.17 6.86 -51.93 -0.36 0.81 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 43 H 0.08 1.30 6.86 -51.93 -0.36 0.95 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 1.09 5.84 -51.93 -0.30 0.79 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -31.77 376.61 -10.90 -42.67 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.48 Total: 0.23 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -0.64 Total: -22.74 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.26 Total: -40.95 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.15 Total: -39.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 39.03 SS G_CDS: -0.55 Total: 38.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.77 -10.90 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423965071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.726 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds