Wall clock time and date at job start Tue Mar 31 2020 17:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47622 * 2 1 4 4 C 1.53093 * 109.48335 * 239.96209 * 2 1 3 5 5 C 1.53173 * 109.16463 * 182.40881 * 4 2 1 6 6 H 1.09005 * 109.61680 * 297.06774 * 5 4 2 7 7 C 1.52996 * 109.54156 * 176.84960 * 5 4 2 8 8 S 1.81408 * 109.46759 * 175.44444 * 7 5 4 9 9 O 1.42095 * 110.54317 * 68.37535 * 8 7 5 10 10 O 1.42099 * 110.54002 * 291.61751 * 8 7 5 11 11 N 1.65604 * 104.44743 * 179.97438 * 8 7 5 12 12 C 1.46928 * 120.63239 * 89.99836 * 11 8 7 13 13 C 1.53187 * 108.77623 * 126.41216 * 12 11 8 14 14 C 1.53036 * 109.33909 * 54.61900 * 13 12 11 15 15 C 1.50704 * 109.46219 * 178.62978 * 14 13 12 16 16 H 1.07994 * 119.99813 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47049 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47064 * 119.99886 * 19 17 15 22 22 H 1.48490 * 109.47242 * 240.00354 * 19 17 15 23 23 C 1.53042 * 109.54058 * 298.68652 * 14 13 12 24 24 C 1.46927 * 120.63146 * 270.01894 * 11 8 7 25 25 C 1.53174 * 109.03768 * 56.97878 * 5 4 2 26 26 C 1.53097 * 109.16252 * 303.02292 * 25 5 4 27 27 O 1.42894 * 109.41599 * 57.60699 * 26 25 5 28 28 H 1.08994 * 109.47651 * 299.98014 * 1 2 3 29 29 H 1.09000 * 109.47048 * 59.98205 * 1 2 3 30 30 H 1.09008 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.52174 * 62.50121 * 4 2 1 32 32 H 1.09000 * 109.52255 * 302.31635 * 4 2 1 33 33 H 1.08995 * 109.47750 * 55.44134 * 7 5 4 34 34 H 1.08996 * 109.47144 * 295.43727 * 7 5 4 35 35 H 1.09000 * 109.58414 * 6.62382 * 12 11 8 36 36 H 1.08999 * 109.58551 * 246.20307 * 12 11 8 37 37 H 1.09002 * 109.49796 * 174.58834 * 13 12 11 38 38 H 1.09000 * 109.49812 * 294.65558 * 13 12 11 39 39 H 1.08998 * 109.46343 * 58.67009 * 14 13 12 40 40 H 0.97002 * 119.99765 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46473 * 301.36154 * 23 14 13 42 42 H 1.09000 * 109.52301 * 181.30261 * 23 14 13 43 43 H 1.08999 * 109.58621 * 353.37928 * 24 11 8 44 44 H 1.09005 * 109.58884 * 113.79504 * 24 11 8 45 45 H 1.08999 * 109.52470 * 62.92686 * 25 5 4 46 46 H 1.08997 * 109.52267 * 183.11373 * 25 5 4 47 47 H 1.09006 * 109.47998 * 177.59197 * 26 25 5 48 48 H 1.09000 * 109.47687 * 297.61965 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9703 0.2429 -1.2416 7 6 4.0877 -1.5598 -2.4169 8 16 5.9007 -1.5022 -2.4449 9 8 6.4398 -2.2385 -1.3558 10 8 6.3533 -0.1870 -2.7358 11 7 6.3214 -2.3845 -3.7817 12 6 6.4674 -1.7353 -5.0917 13 6 7.8481 -2.0773 -5.6603 14 6 8.0219 -3.5975 -5.6894 15 6 9.3661 -3.9380 -6.2796 16 1 10.0300 -3.1494 -6.6013 17 6 9.7486 -5.2565 -6.4080 18 7 8.9403 -6.2169 -6.0158 19 14 11.4145 -5.6786 -7.1403 20 1 12.1285 -4.4271 -7.5001 21 1 12.2151 -6.4360 -6.1450 22 1 11.2245 -6.5080 -8.3572 23 6 7.9350 -4.1500 -4.2649 24 6 6.5554 -3.8315 -3.6805 25 6 4.0176 -1.4600 0.0812 26 6 3.4306 -0.7090 1.2792 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7149 -0.1847 -2.1398 32 1 1.6444 -1.7377 -1.2707 33 1 3.6960 -1.1201 -3.3341 34 1 3.7583 -2.5960 -2.3412 35 1 6.3771 -0.6552 -4.9763 36 1 5.6935 -2.0986 -5.7678 37 1 7.9328 -1.6820 -6.6726 38 1 8.6205 -1.6349 -5.0311 39 1 7.2349 -4.0414 -6.2991 40 1 9.2093 -7.1444 -6.1065 41 1 8.7066 -3.6885 -3.6486 42 1 8.0819 -5.2299 -4.2834 43 1 6.5230 -4.1345 -2.6339 44 1 5.7886 -4.3658 -4.2415 45 1 3.6614 -2.4901 0.0869 46 1 5.1059 -1.4497 0.1423 47 1 3.7099 -1.2199 2.2008 48 1 3.8192 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423965071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:35 Heat of formation + Delta-G solvation = -159.964510 kcal Electronic energy + Delta-G solvation = -27815.990589 eV Core-core repulsion = 23996.207525 eV Total energy + Delta-G solvation = -3819.783064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59979 -39.27986 -38.25581 -37.04641 -36.07524 -35.28275 -33.71798 -32.64644 -31.65941 -30.10848 -28.00661 -27.61602 -24.60416 -24.11084 -23.93842 -22.75127 -21.29592 -21.07372 -19.64513 -18.86583 -18.20400 -17.57189 -17.32980 -17.05093 -16.82398 -16.50607 -15.96758 -15.59732 -15.30524 -15.14254 -14.97234 -14.88693 -14.47372 -14.36732 -14.03322 -13.72614 -13.53424 -13.44882 -13.34426 -13.20585 -13.08930 -12.92611 -12.82391 -12.72706 -12.55820 -12.39595 -12.33821 -12.13057 -12.06557 -12.01143 -11.86656 -11.47173 -11.38866 -11.16933 -10.95261 -10.78614 -10.47014 -10.38882 -9.76257 -8.07414 -6.20132 -0.76708 1.38884 1.41950 1.52058 1.64526 2.43744 2.80286 2.88681 3.10804 3.18966 3.33171 3.51280 3.67563 3.80176 3.93687 4.11928 4.18023 4.23360 4.33933 4.34548 4.38614 4.46599 4.50497 4.54183 4.66084 4.68992 4.75375 4.76769 4.81275 4.85449 4.86381 4.93549 5.01317 5.04629 5.08579 5.12438 5.27161 5.28810 5.33773 5.34151 5.56951 5.66484 5.73116 6.03636 6.16906 6.28330 6.42409 6.90627 7.47248 8.96109 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.002631 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.326168 B =10639.912039 C =10753.135946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.065 0.935 4 C -0.132 4.132 5 C -0.085 4.085 6 H 0.088 0.912 7 C -0.598 4.598 8 S 2.598 3.402 9 O -0.986 6.986 10 O -0.991 6.991 11 N -0.999 5.999 12 C 0.121 3.879 13 C -0.119 4.119 14 C 0.047 3.953 15 C -0.535 4.535 16 H 0.046 0.954 17 C 0.015 3.985 18 N -0.912 5.912 19 Si 0.948 3.052 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.278 1.278 23 C -0.117 4.117 24 C 0.126 3.874 25 C -0.187 4.187 26 C 0.062 3.938 27 O -0.396 6.396 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.011 0.989 40 H 0.261 0.739 41 H 0.015 0.985 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 11.528 9.898 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.170 4.170 5 C -0.105 4.105 6 H 0.106 0.894 7 C -0.731 4.731 8 S 2.698 3.302 9 O -0.977 6.977 10 O -0.982 6.982 11 N -0.837 5.837 12 C -0.004 4.004 13 C -0.158 4.158 14 C 0.028 3.972 15 C -0.573 4.573 16 H 0.064 0.936 17 C -0.184 4.184 18 N -0.552 5.552 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.204 1.204 23 C -0.157 4.157 24 C 0.001 3.999 25 C -0.225 4.225 26 C -0.015 4.015 27 O -0.316 6.316 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.125 0.875 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.457 11.676 10.611 24.281 hybrid contribution 1.216 -0.788 -0.883 1.697 sum -17.240 10.888 9.728 22.592 Atomic orbital electron populations 1.21782 0.91686 1.03105 1.03399 1.22364 0.96227 0.95294 0.84540 0.91660 1.22255 0.92106 1.03106 0.99573 1.21061 0.99056 0.98985 0.91417 0.89391 1.30536 1.22497 1.11747 1.08285 1.05164 0.79561 0.72874 0.72637 1.93523 1.78107 1.72594 1.53459 1.93519 1.80787 1.39654 1.84207 1.57517 1.84183 1.18362 1.23598 1.21573 0.97960 0.97504 0.83386 1.21861 0.96135 0.97997 0.99843 1.18587 0.95032 0.91032 0.92550 1.21645 1.03291 0.91964 1.40401 0.93552 1.25662 1.00188 0.96584 0.95978 1.69961 1.37313 0.99693 1.48226 0.85656 0.80622 0.78047 0.78208 1.19668 1.20922 1.20357 1.21774 0.94119 1.02530 0.97282 1.21492 0.98168 0.78840 1.01401 1.22748 1.02143 1.01893 0.95720 1.22606 0.80551 1.00105 0.98219 1.87918 1.21333 1.78385 1.43958 0.91887 0.89127 0.92078 0.88223 0.90232 0.81813 0.82810 0.88547 0.89422 0.91441 0.94733 0.97079 0.93000 0.96597 0.90658 0.89635 0.90400 0.89685 0.90578 0.87497 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.56 71.98 0.69 -0.84 16 2 C 0.07 1.04 3.26 30.63 0.10 1.14 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.13 -1.71 4.70 30.68 0.14 -1.56 16 5 C -0.09 -1.44 2.28 -10.68 -0.02 -1.46 16 6 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 7 C -0.60 -10.09 5.63 71.98 0.41 -9.68 16 8 S 2.60 74.12 5.10 -56.49 -0.29 73.83 16 9 O -0.99 -34.10 14.41 -127.65 -1.84 -35.93 16 10 O -0.99 -33.55 16.59 -127.65 -2.12 -35.67 16 11 N -1.00 -31.91 3.22 -513.09 -1.65 -33.56 16 12 C 0.12 3.78 6.43 86.36 0.56 4.33 16 13 C -0.12 -4.86 5.30 30.67 0.16 -4.69 16 14 C 0.05 2.27 2.06 -11.51 -0.02 2.25 16 15 C -0.53 -29.55 8.56 25.60 0.22 -29.33 16 16 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 17 C 0.01 0.80 5.30 84.65 0.45 1.25 16 18 N -0.91 -51.51 11.31 21.45 0.24 -51.27 16 19 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 C -0.12 -5.54 5.15 30.67 0.16 -5.38 16 24 C 0.13 4.52 6.43 86.36 0.56 5.07 16 25 C -0.19 -3.66 5.00 30.68 0.15 -3.51 16 26 C 0.06 1.08 6.84 72.01 0.49 1.57 16 27 O -0.40 -7.50 10.41 -148.98 -1.55 -9.05 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.68 6.86 -2.39 -0.02 2.66 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 43 H 0.09 2.89 6.86 -2.39 -0.02 2.88 16 44 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 1.75 5.84 -2.39 -0.01 1.74 16 47 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -70.81 376.61 -0.23 -71.04 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.92 Total: 15.57 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 4.04 Total: -40.84 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.41 Total: -84.83 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -5.51 Total: -80.66 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 74.12 SS G_CDS: -0.29 Total: 73.83 kcal Total: -70.81 -0.23 -71.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423965071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.926 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds