Wall clock time and date at job start Tue Mar 31 2020 17:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99908 * 2 1 4 4 O 1.20828 * 119.99868 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00235 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.28498 * 60.68218 * 5 3 2 7 7 C 1.54005 * 110.32446 * 298.54886 * 5 3 2 8 8 N 1.47482 * 107.08003 * 242.30588 * 7 5 3 9 9 C 1.34779 * 127.03016 * 154.51615 * 8 7 5 10 10 O 1.21281 * 119.99742 * 180.02562 * 9 8 7 11 11 C 1.50698 * 120.00147 * 0.02983 * 9 8 7 12 12 H 1.08996 * 109.47139 * 59.99823 * 11 9 8 13 13 C 1.50701 * 109.47151 * 299.99759 * 11 9 8 14 14 H 1.08000 * 120.00228 * 125.76836 * 13 11 9 15 15 C 1.37876 * 119.99839 * 305.77629 * 13 11 9 16 16 N 1.31519 * 120.00070 * 5.08759 * 15 13 11 17 17 Si 1.86800 * 119.99915 * 185.09131 * 15 13 11 18 18 H 1.48497 * 109.47110 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46958 * 119.99905 * 17 15 13 20 20 H 1.48505 * 109.47170 * 239.99468 * 17 15 13 21 21 C 1.50696 * 109.47107 * 179.97438 * 11 9 8 22 22 C 1.38231 * 120.00637 * 294.80661 * 21 11 9 23 23 C 1.38228 * 120.00618 * 179.78820 * 22 21 11 24 24 C 1.38236 * 119.99724 * 0.46384 * 23 22 21 25 25 C 1.38233 * 119.99986 * 359.76810 * 24 23 22 26 26 C 1.38235 * 120.00205 * 0.02562 * 25 24 23 27 27 C 1.48110 * 105.93492 * 334.78206 * 8 7 5 28 28 C 1.54595 * 103.42331 * 39.02406 * 27 8 7 29 29 H 1.08998 * 110.57756 * 81.17404 * 28 27 8 30 30 C 1.53005 * 110.83556 * 204.44574 * 28 27 8 31 31 H 1.09006 * 109.46803 * 60.00453 * 1 2 3 32 32 H 1.09000 * 109.46433 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47310 * 300.00241 * 1 2 3 34 34 H 1.09002 * 109.91027 * 122.94822 * 7 5 3 35 35 H 1.08996 * 110.07301 * 1.76165 * 7 5 3 36 36 H 0.96998 * 119.99621 * 180.02562 * 16 15 13 37 37 H 1.08008 * 119.99431 * 359.97438 * 22 21 11 38 38 H 1.08001 * 120.00529 * 180.25212 * 23 22 21 39 39 H 1.08007 * 119.99911 * 179.79335 * 24 23 22 40 40 H 1.08005 * 120.00010 * 180.02562 * 25 24 23 41 41 H 1.07994 * 120.00103 * 179.97438 * 26 25 24 42 42 H 1.09001 * 110.66251 * 157.50723 * 27 8 7 43 43 H 1.08999 * 110.66597 * 280.62226 * 27 8 7 44 44 H 1.08988 * 109.47523 * 173.56293 * 30 28 27 45 45 H 1.09004 * 109.47168 * 293.56562 * 30 28 27 46 46 H 1.09005 * 109.46904 * 53.55831 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9703 0.7947 -0.8906 7 6 4.1362 0.6140 1.2695 8 7 4.8467 1.6640 2.0231 9 6 5.0797 1.6940 3.3502 10 8 5.6810 2.6268 3.8394 11 6 4.5931 0.5685 4.2263 12 1 5.0464 -0.3676 3.9005 13 6 3.0933 0.4633 4.1223 14 1 2.6352 -0.4775 3.8553 15 6 2.3061 1.5683 4.3677 16 7 2.8653 2.7370 4.5941 17 14 0.4452 1.4055 4.3788 18 1 0.0700 -0.0036 4.0981 19 1 -0.0784 1.8019 5.7107 20 1 -0.1352 2.2891 3.3358 21 6 4.9799 0.8423 5.6568 22 6 6.3136 0.8727 6.0186 23 6 6.6686 1.1281 7.3299 24 6 5.6893 1.3436 8.2815 25 6 4.3554 1.3085 7.9208 26 6 4.0005 1.0573 6.6086 27 6 5.2462 2.6818 1.0240 28 6 4.0290 2.7484 0.0732 29 1 3.2465 3.3784 0.4961 30 6 4.4456 3.2542 -1.3095 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.8305 -0.1800 0.9946 35 1 3.3266 0.2060 1.8746 36 1 2.3114 3.5142 4.7672 37 1 7.0786 0.6998 5.2760 38 1 7.7108 1.1559 7.6117 39 1 5.9665 1.5399 9.3068 40 1 3.5903 1.4773 8.6642 41 1 2.9584 1.0294 6.3268 42 1 5.4121 3.6467 1.5032 43 1 6.1368 2.3615 0.4835 44 1 3.5989 3.1846 -1.9922 45 1 4.7675 4.2930 -1.2346 46 1 5.2675 2.6455 -1.6866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433515701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:18 Heat of formation + Delta-G solvation = -86.237733 kcal Electronic energy + Delta-G solvation = -30249.409420 eV Core-core repulsion = 26297.379438 eV Total energy + Delta-G solvation = -3952.029982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51600 -39.08206 -38.04174 -36.64957 -35.90901 -33.77870 -32.15669 -30.89015 -30.13292 -29.65921 -27.67237 -27.30810 -25.69297 -24.16607 -23.34807 -21.41207 -21.26330 -20.34452 -19.51114 -18.43277 -17.39545 -17.01925 -16.55336 -16.11219 -15.74390 -15.39476 -14.88670 -14.80563 -14.28994 -14.01101 -13.70594 -13.62858 -13.34567 -13.06050 -12.84225 -12.59117 -12.38390 -12.25697 -12.14886 -11.97457 -11.90848 -11.64787 -11.53679 -11.26450 -11.01152 -10.85500 -10.76672 -10.75930 -10.57514 -10.43105 -10.31447 -10.09855 -10.08085 -9.74954 -9.39559 -8.66186 -8.31555 -7.78089 -7.66094 -7.42463 -6.20786 -4.32951 2.47234 2.49357 2.58261 2.92537 3.15128 3.24140 3.27561 3.94789 4.16355 4.33565 4.59838 4.89772 4.99813 5.02820 5.05641 5.22343 5.28485 5.35073 5.38661 5.61793 5.65592 5.69719 5.82031 5.83138 5.91858 5.97816 6.01524 6.11574 6.21185 6.27166 6.32557 6.46398 6.51874 6.57241 6.60842 6.65797 6.76088 6.84626 7.07331 7.20308 7.30529 7.48999 7.59814 7.67506 7.77709 8.01175 8.12650 8.24117 8.59764 8.78604 9.30048 9.68156 10.80234 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.005343 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.362745 B = 5238.784561 C = 6531.400592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.503 6.503 5 C -0.092 4.092 6 H 0.113 0.887 7 C 0.112 3.888 8 N -0.619 5.619 9 C 0.578 3.422 10 O -0.544 6.544 11 C 0.060 3.940 12 H 0.056 0.944 13 C -0.536 4.536 14 H 0.069 0.931 15 C 0.076 3.924 16 N -0.839 5.839 17 Si 0.870 3.130 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.018 4.018 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.058 4.058 27 C 0.113 3.887 28 C -0.095 4.095 29 H 0.099 0.901 30 C -0.138 4.138 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -5.398 -8.773 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.390 6.390 5 C -0.112 4.112 6 H 0.131 0.869 7 C -0.012 4.012 8 N -0.355 5.355 9 C 0.370 3.630 10 O -0.419 6.419 11 C 0.039 3.961 12 H 0.074 0.926 13 C -0.574 4.574 14 H 0.087 0.913 15 C -0.132 4.132 16 N -0.472 5.472 17 Si 0.697 3.303 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.019 4.019 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.076 4.076 27 C -0.010 4.010 28 C -0.115 4.115 29 H 0.117 0.883 30 C -0.196 4.196 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.910 -4.376 -8.305 9.431 hybrid contribution -1.485 0.335 -0.055 1.523 sum -0.575 -4.041 -8.359 9.303 Atomic orbital electron populations 1.23225 0.76867 1.03427 1.02313 1.86493 1.22990 1.33494 1.84197 1.23537 0.91845 0.81255 0.71700 1.90643 1.66960 1.36406 1.44989 1.22105 0.87462 0.99732 1.01885 0.86882 1.22017 0.98188 0.90512 0.90530 1.48524 1.58307 1.22353 1.06277 1.20691 0.75411 0.88213 0.78689 1.90544 1.42612 1.36744 1.72017 1.17886 0.97446 0.92384 0.88433 0.92600 1.20703 0.88640 0.97015 1.51014 0.91251 1.24994 0.98361 0.95396 0.94444 1.70049 1.35059 0.99005 1.43092 0.86837 0.86351 0.78711 0.78412 1.19148 1.20394 1.20495 1.19827 0.91515 0.94681 0.95888 1.20879 0.96102 1.01053 0.95186 1.20776 0.97896 1.03519 0.93861 1.20798 0.93521 1.03628 0.98154 1.21070 0.95382 1.03308 0.96889 1.21419 1.01318 0.94058 0.90838 1.22214 0.94871 0.94607 0.89350 1.22282 0.99189 0.93559 0.96450 0.88273 1.21727 1.00999 1.01399 0.95428 0.92262 0.88211 0.92016 0.91825 0.87125 0.92291 0.88040 0.87953 0.88085 0.87983 0.84636 0.90148 0.92258 0.92593 0.92066 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.36 -5.53 10.49 -39.26 -0.41 -5.94 16 3 C 0.47 8.15 7.05 36.01 0.25 8.40 16 4 O -0.50 -10.09 15.20 -18.75 -0.29 -10.38 16 5 C -0.09 -1.38 3.07 -90.40 -0.28 -1.66 16 6 H 0.11 1.28 7.85 -51.93 -0.41 0.87 16 7 C 0.11 1.91 6.29 -2.98 -0.02 1.89 16 8 N -0.62 -12.61 3.29 -169.99 -0.56 -13.17 16 9 C 0.58 13.92 5.46 -10.99 -0.06 13.86 16 10 O -0.54 -14.90 15.37 5.56 0.09 -14.81 16 11 C 0.06 1.40 2.26 -94.08 -0.21 1.19 16 12 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.54 -12.90 5.36 -34.44 -0.18 -13.09 16 14 H 0.07 1.63 7.76 -52.49 -0.41 1.22 16 15 C 0.08 1.91 3.19 -17.82 -0.06 1.85 16 16 N -0.84 -22.86 10.42 55.43 0.58 -22.28 16 17 Si 0.87 19.92 29.54 -169.99 -5.02 14.90 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.02 -0.43 4.50 -104.62 -0.47 -0.90 16 22 C -0.11 -2.51 8.75 -39.59 -0.35 -2.86 16 23 C -0.14 -2.85 10.05 -39.59 -0.40 -3.25 16 24 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 25 C -0.15 -3.15 10.05 -39.58 -0.40 -3.54 16 26 C -0.06 -1.39 8.01 -39.58 -0.32 -1.71 16 27 C 0.11 1.96 6.52 -2.32 -0.02 1.95 16 28 C -0.10 -1.50 2.98 -88.93 -0.27 -1.76 16 29 H 0.10 1.91 6.93 -51.93 -0.36 1.55 16 30 C -0.14 -1.62 9.16 37.16 0.34 -1.28 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.11 2.16 5.13 -51.93 -0.27 1.89 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 37 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.14 3.40 4.97 -52.49 -0.26 3.14 16 42 H 0.08 1.57 7.85 -51.93 -0.41 1.16 16 43 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 44 H 0.05 0.64 8.14 -51.94 -0.42 0.22 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -31.74 373.03 -8.48 -40.22 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.73 Total: 8.41 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.76 Total: -2.58 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.02 Total: -35.45 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.61 Total: -31.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.74 -8.48 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433515701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.013 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds