Wall clock time and date at job start Tue Mar 31 2020 17:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99908 * 2 1 4 4 O 1.20828 * 119.99868 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00235 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.28498 * 60.68218 * 5 3 2 7 7 C 1.54005 * 110.32446 * 298.54886 * 5 3 2 8 8 N 1.47482 * 107.08003 * 242.30588 * 7 5 3 9 9 C 1.34779 * 127.03016 * 154.51615 * 8 7 5 10 10 O 1.21281 * 119.99742 * 180.02562 * 9 8 7 11 11 C 1.50698 * 120.00147 * 0.02983 * 9 8 7 12 12 H 1.08996 * 109.47139 * 59.99823 * 11 9 8 13 13 C 1.50701 * 109.47151 * 299.99759 * 11 9 8 14 14 H 1.08000 * 120.00228 * 125.76836 * 13 11 9 15 15 C 1.37876 * 119.99839 * 305.77629 * 13 11 9 16 16 N 1.31519 * 120.00070 * 5.08759 * 15 13 11 17 17 Si 1.86800 * 119.99915 * 185.09131 * 15 13 11 18 18 H 1.48497 * 109.47110 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46958 * 119.99905 * 17 15 13 20 20 H 1.48505 * 109.47170 * 239.99468 * 17 15 13 21 21 C 1.50696 * 109.47107 * 179.97438 * 11 9 8 22 22 C 1.38231 * 120.00637 * 294.80661 * 21 11 9 23 23 C 1.38228 * 120.00618 * 179.78820 * 22 21 11 24 24 C 1.38236 * 119.99724 * 0.46384 * 23 22 21 25 25 C 1.38233 * 119.99986 * 359.76810 * 24 23 22 26 26 C 1.38235 * 120.00205 * 0.02562 * 25 24 23 27 27 C 1.48110 * 105.93492 * 334.78206 * 8 7 5 28 28 C 1.54595 * 103.42331 * 39.02406 * 27 8 7 29 29 H 1.08998 * 110.57756 * 81.17404 * 28 27 8 30 30 C 1.53005 * 110.83556 * 204.44574 * 28 27 8 31 31 H 1.09006 * 109.46803 * 60.00453 * 1 2 3 32 32 H 1.09000 * 109.46433 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47310 * 300.00241 * 1 2 3 34 34 H 1.09002 * 109.91027 * 122.94822 * 7 5 3 35 35 H 1.08996 * 110.07301 * 1.76165 * 7 5 3 36 36 H 0.96998 * 119.99621 * 180.02562 * 16 15 13 37 37 H 1.08008 * 119.99431 * 359.97438 * 22 21 11 38 38 H 1.08001 * 120.00529 * 180.25212 * 23 22 21 39 39 H 1.08007 * 119.99911 * 179.79335 * 24 23 22 40 40 H 1.08005 * 120.00010 * 180.02562 * 25 24 23 41 41 H 1.07994 * 120.00103 * 179.97438 * 26 25 24 42 42 H 1.09001 * 110.66251 * 157.50723 * 27 8 7 43 43 H 1.08999 * 110.66597 * 280.62226 * 27 8 7 44 44 H 1.08988 * 109.47523 * 173.56293 * 30 28 27 45 45 H 1.09004 * 109.47168 * 293.56562 * 30 28 27 46 46 H 1.09005 * 109.46904 * 53.55831 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9703 0.7947 -0.8906 7 6 4.1362 0.6140 1.2695 8 7 4.8467 1.6640 2.0231 9 6 5.0797 1.6940 3.3502 10 8 5.6810 2.6268 3.8394 11 6 4.5931 0.5685 4.2263 12 1 5.0464 -0.3676 3.9005 13 6 3.0933 0.4633 4.1223 14 1 2.6352 -0.4775 3.8553 15 6 2.3061 1.5683 4.3677 16 7 2.8653 2.7370 4.5941 17 14 0.4452 1.4055 4.3788 18 1 0.0700 -0.0036 4.0981 19 1 -0.0784 1.8019 5.7107 20 1 -0.1352 2.2891 3.3358 21 6 4.9799 0.8423 5.6568 22 6 6.3136 0.8727 6.0186 23 6 6.6686 1.1281 7.3299 24 6 5.6893 1.3436 8.2815 25 6 4.3554 1.3085 7.9208 26 6 4.0005 1.0573 6.6086 27 6 5.2462 2.6818 1.0240 28 6 4.0290 2.7484 0.0732 29 1 3.2465 3.3784 0.4961 30 6 4.4456 3.2542 -1.3095 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.8305 -0.1800 0.9946 35 1 3.3266 0.2060 1.8746 36 1 2.3114 3.5142 4.7672 37 1 7.0786 0.6998 5.2760 38 1 7.7108 1.1559 7.6117 39 1 5.9665 1.5399 9.3068 40 1 3.5903 1.4773 8.6642 41 1 2.9584 1.0294 6.3268 42 1 5.4121 3.6467 1.5032 43 1 6.1368 2.3615 0.4835 44 1 3.5989 3.1846 -1.9922 45 1 4.7675 4.2930 -1.2346 46 1 5.2675 2.6455 -1.6866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433515701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:17 Heat of formation + Delta-G solvation = -104.103460 kcal Electronic energy + Delta-G solvation = -30250.184136 eV Core-core repulsion = 26297.379438 eV Total energy + Delta-G solvation = -3952.804698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86538 -40.72155 -39.56592 -38.20981 -37.34135 -35.65049 -33.59676 -32.67195 -31.42514 -31.33161 -29.34032 -28.44805 -27.13738 -25.81063 -24.89400 -22.94777 -22.71168 -21.96419 -20.80094 -20.12355 -18.92380 -18.53825 -17.93253 -17.47072 -17.34234 -17.11155 -16.69053 -16.33348 -15.83001 -15.61653 -15.38964 -15.00226 -14.71733 -14.37332 -14.25193 -14.12961 -14.00637 -13.82027 -13.54762 -13.33637 -13.27716 -13.13883 -12.97671 -12.91385 -12.77663 -12.57656 -12.25856 -12.05224 -11.94664 -11.83665 -11.80663 -11.66074 -11.47288 -11.45270 -11.20671 -10.60030 -10.19671 -9.44661 -9.26530 -9.11885 -8.17585 -6.30317 0.81872 0.91807 1.14822 1.26315 1.32686 1.39527 1.73270 2.23132 2.34980 2.63104 3.11455 3.27404 3.37834 3.62541 3.82444 4.13478 4.22326 4.25582 4.27665 4.29405 4.34415 4.42089 4.47617 4.52510 4.53722 4.63718 4.66288 4.79228 4.90930 4.92521 4.96915 4.99122 5.04615 5.06934 5.14725 5.26051 5.35061 5.41165 5.41463 5.54047 5.62593 5.78445 5.85618 5.92560 5.96252 6.38507 6.49549 6.70562 6.72646 7.06190 7.33931 7.89346 8.82133 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.005343 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.362745 B = 5238.784561 C = 6531.400592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.541 6.541 5 C -0.084 4.084 6 H 0.165 0.835 7 C 0.108 3.892 8 N -0.627 5.627 9 C 0.574 3.426 10 O -0.589 6.589 11 C 0.053 3.947 12 H 0.070 0.930 13 C -0.520 4.520 14 H 0.074 0.926 15 C 0.047 3.953 16 N -0.871 5.871 17 Si 0.910 3.090 18 H -0.247 1.247 19 H -0.280 1.280 20 H -0.300 1.300 21 C -0.043 4.043 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.157 4.157 26 C -0.086 4.086 27 C 0.112 3.888 28 C -0.089 4.089 29 H 0.051 0.949 30 C -0.129 4.129 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -7.335 -9.902 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.103 4.103 6 H 0.183 0.817 7 C -0.016 4.016 8 N -0.361 5.361 9 C 0.366 3.634 10 O -0.468 6.468 11 C 0.032 3.968 12 H 0.088 0.912 13 C -0.557 4.557 14 H 0.092 0.908 15 C -0.157 4.157 16 N -0.506 5.506 17 Si 0.737 3.263 18 H -0.170 1.170 19 H -0.206 1.206 20 H -0.227 1.227 21 C -0.044 4.044 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.175 4.175 26 C -0.104 4.104 27 C -0.011 4.011 28 C -0.109 4.109 29 H 0.070 0.930 30 C -0.186 4.186 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.128 -6.380 -9.472 11.617 hybrid contribution -1.880 0.885 0.302 2.100 sum 0.248 -5.496 -9.170 10.693 Atomic orbital electron populations 1.23509 0.75573 1.05771 1.01676 1.86488 1.24315 1.32532 1.83635 1.24033 0.92793 0.81125 0.70646 1.90637 1.67952 1.37700 1.46817 1.22235 0.86049 0.99221 1.02818 0.81720 1.22187 0.98133 0.90675 0.90573 1.48556 1.57758 1.23835 1.05963 1.20692 0.75067 0.87703 0.79919 1.90498 1.44823 1.38200 1.73301 1.17976 0.96963 0.92952 0.88898 0.91232 1.20849 0.89293 0.96595 1.49010 0.90820 1.25383 1.00620 0.95187 0.94494 1.70202 1.35392 0.99360 1.45607 0.86206 0.83574 0.79140 0.77377 1.17024 1.20605 1.22734 1.19954 0.92529 0.95964 0.95911 1.21050 0.95481 1.01561 0.96533 1.21203 0.99891 1.01805 0.92969 1.21212 0.92548 1.01944 0.99989 1.21351 0.97053 1.02784 0.96288 1.21362 1.00352 0.96285 0.92394 1.22414 0.97136 0.92589 0.88924 1.22157 0.96990 0.93621 0.98123 0.93006 1.21690 1.02247 1.02023 0.92642 0.91011 0.84382 0.94615 0.87797 0.89802 0.93659 0.87545 0.84511 0.84266 0.86120 0.86849 0.93435 0.88279 0.92095 0.91898 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.89 16 2 O -0.35 -10.46 10.49 -51.44 -0.54 -11.00 16 3 C 0.47 15.76 7.05 71.24 0.50 16.27 16 4 O -0.54 -22.14 15.20 21.96 0.33 -21.80 16 5 C -0.08 -2.33 3.07 -10.65 -0.03 -2.36 16 6 H 0.17 2.88 7.85 -2.39 -0.02 2.87 16 7 C 0.11 3.49 6.29 86.53 0.54 4.04 16 8 N -0.63 -25.47 3.29 -810.11 -2.66 -28.13 16 9 C 0.57 28.20 5.46 87.66 0.48 28.68 16 10 O -0.59 -33.38 15.37 -3.03 -0.05 -33.43 16 11 C 0.05 2.54 2.26 -13.03 -0.03 2.51 16 12 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 13 C -0.52 -25.44 5.36 25.60 0.14 -25.31 16 14 H 0.07 3.47 7.76 -2.91 -0.02 3.44 16 15 C 0.05 2.45 3.19 84.65 0.27 2.72 16 16 N -0.87 -49.76 10.42 21.45 0.22 -49.54 16 17 Si 0.91 42.23 29.54 68.60 2.03 44.26 16 18 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 21 C -0.04 -2.06 4.50 -19.87 -0.09 -2.15 16 22 C -0.13 -5.59 8.75 22.27 0.19 -5.40 16 23 C -0.14 -5.35 10.05 22.27 0.22 -5.12 16 24 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 25 C -0.16 -6.56 10.05 22.27 0.22 -6.33 16 26 C -0.09 -4.17 8.01 22.27 0.18 -3.99 16 27 C 0.11 3.82 6.52 86.61 0.56 4.39 16 28 C -0.09 -2.72 2.98 -9.70 -0.03 -2.75 16 29 H 0.05 2.09 6.93 -2.39 -0.02 2.07 16 30 C -0.13 -2.67 9.16 71.98 0.66 -2.02 16 31 H 0.07 1.59 8.13 -2.38 -0.02 1.58 16 32 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.07 8.13 -2.39 -0.02 1.05 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.08 3.21 5.13 -2.39 -0.01 3.20 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.11 5.91 4.97 -2.91 -0.01 5.90 16 42 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 43 H 0.10 2.61 8.01 -2.39 -0.02 2.59 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.09 1.32 8.10 -2.38 -0.02 1.31 16 Total: -1.00 -74.21 373.03 5.53 -68.68 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.98 Total: 30.83 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.22 Total: 0.13 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.44 Total: -77.67 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -0.25 Total: -66.23 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.21 5.53 -68.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433515701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.426 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds