Wall clock time and date at job start Tue Mar 31 2020 15:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 H 1.09005 * 110.43619 * 59.29327 * 16 14 13 18 18 C 1.54627 * 110.48570 * 181.84185 * 16 14 13 19 19 C 1.54480 * 101.76694 * 93.87765 * 18 16 14 20 20 N 1.46764 * 105.47360 * 25.41415 * 19 18 16 21 21 C 1.46501 * 124.34886 * 162.97818 * 20 19 18 22 22 C 1.50696 * 109.46682 * 90.00340 * 21 20 19 23 23 C 1.38231 * 120.00031 * 269.72566 * 22 21 20 24 24 C 1.38242 * 119.99822 * 179.74393 * 23 22 21 25 25 C 1.38234 * 120.00277 * 0.53406 * 24 23 22 26 26 C 1.38236 * 119.99773 * 359.74061 * 25 24 23 27 27 C 1.38231 * 120.00105 * 359.97438 * 26 25 24 28 28 C 1.34750 * 111.35187 * 343.02086 * 20 19 18 29 29 O 1.21276 * 125.12182 * 180.37358 * 28 20 19 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.96706 * 211.99867 * 18 16 14 37 37 H 1.09000 * 110.96999 * 335.75796 * 18 16 14 38 38 H 1.08996 * 110.24143 * 144.41575 * 19 18 16 39 39 H 1.08993 * 110.24522 * 266.32964 * 19 18 16 40 40 H 1.08998 * 109.47123 * 210.00237 * 21 20 19 41 41 H 1.08997 * 109.47533 * 330.00283 * 21 20 19 42 42 H 1.08001 * 119.99907 * 359.97438 * 23 22 21 43 43 H 1.08005 * 119.99761 * 180.29083 * 24 23 22 44 44 H 1.07998 * 120.00221 * 179.76874 * 25 24 23 45 45 H 1.08001 * 120.00194 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.00653 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 1 0.7204 4.1928 2.8025 18 6 -1.3959 4.0362 2.2967 19 6 -2.3143 2.9136 2.8284 20 7 -1.4979 2.1618 3.7888 21 6 -2.0395 1.2435 4.7936 22 6 -2.1238 -0.1442 4.2122 23 6 -3.2736 -0.5528 3.5627 24 6 -3.3490 -1.8240 3.0247 25 6 -2.2787 -2.6904 3.1458 26 6 -1.1310 -2.2837 3.8002 27 6 -1.0533 -1.0106 4.3331 28 6 -0.1859 2.4247 3.6291 29 8 0.7087 1.9347 4.2850 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 -1.5153 4.9479 2.8821 37 1 -1.5834 4.2258 1.2398 38 1 -3.1839 3.3420 3.3266 39 1 -2.6297 2.2654 2.0109 40 1 -1.3859 1.2329 5.6659 41 1 -3.0349 1.5746 5.0895 42 1 -4.1117 0.1225 3.4724 43 1 -4.2457 -2.1415 2.5132 44 1 -2.3390 -3.6847 2.7288 45 1 -0.2945 -2.9605 3.8945 46 1 -0.1569 -0.6930 4.8447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525463038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:54 Heat of formation + Delta-G solvation = -96.179903 kcal Electronic energy + Delta-G solvation = -29747.563519 eV Core-core repulsion = 25795.102412 eV Total energy + Delta-G solvation = -3952.461107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93010 -39.41012 -38.76992 -36.51934 -35.69391 -33.72231 -33.44825 -31.36801 -30.88250 -30.66820 -28.21596 -27.11018 -26.29225 -23.61127 -22.75678 -22.39442 -21.79019 -20.61255 -19.81773 -19.15590 -17.63890 -17.10349 -16.67171 -16.42748 -15.97929 -15.81801 -15.33460 -15.11674 -14.68023 -14.57956 -14.29086 -13.72536 -13.61666 -13.39801 -13.17025 -12.95101 -12.79749 -12.76076 -12.46342 -12.23733 -12.01241 -11.60015 -11.57139 -11.38353 -11.24767 -11.19111 -11.06403 -10.98373 -10.91395 -10.63025 -10.26920 -9.91786 -9.74040 -9.61232 -9.34765 -8.89388 -8.88587 -8.79254 -8.70161 -8.42662 -6.15762 -4.22334 1.25154 1.42967 2.42456 2.84524 3.07256 3.28990 3.32020 3.35149 3.64724 3.87710 4.26240 4.35578 4.39461 4.68380 4.72669 4.84612 4.99346 5.01894 5.08304 5.16103 5.18828 5.35633 5.39547 5.48746 5.56425 5.63695 5.71959 5.79068 5.96263 5.98128 6.04798 6.25456 6.32870 6.42718 6.44466 6.48240 6.53478 6.57642 6.89449 6.97414 7.00163 7.01331 7.18418 7.25692 7.63799 7.75611 7.93593 8.17266 8.18132 8.60616 8.89959 9.42436 10.91049 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.004228 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.302585 B = 6621.451158 C = 7680.111365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.342 6.342 14 C 0.471 3.529 15 O -0.508 6.508 16 C -0.127 4.127 17 H 0.137 0.863 18 C -0.121 4.121 19 C 0.103 3.897 20 N -0.616 5.616 21 C 0.170 3.830 22 C -0.114 4.114 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.092 4.092 28 C 0.535 3.465 29 O -0.501 6.501 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.266 0.734 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 1.543 12.268 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.257 6.257 14 C 0.313 3.687 15 O -0.398 6.398 16 C -0.150 4.150 17 H 0.154 0.846 18 C -0.158 4.158 19 C -0.020 4.020 20 N -0.351 5.351 21 C 0.049 3.951 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.111 4.111 28 C 0.321 3.679 29 O -0.374 6.374 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.569 1.114 12.180 19.799 hybrid contribution 0.876 -0.168 -0.411 0.982 sum -14.693 0.947 11.769 18.849 Atomic orbital electron populations 1.21795 0.98364 0.98863 1.00356 1.21991 0.92584 0.99309 1.03273 1.20717 0.95112 0.88806 0.78345 0.93508 1.21014 0.89653 1.38987 1.06182 0.91323 1.24866 0.99211 0.94727 0.95031 1.69878 1.35448 1.37886 1.09488 0.86345 0.83930 0.78513 0.77440 1.19905 1.21041 1.19965 1.86553 1.33384 1.61695 1.44094 1.22253 0.81347 0.77093 0.88039 1.90599 1.55603 1.58324 1.35234 1.21807 1.00608 0.99145 0.93411 0.84575 1.22642 0.90786 0.97424 1.04955 1.22128 0.94270 0.93329 0.92263 1.48340 1.07073 1.44290 1.35442 1.20235 1.00030 0.84930 0.89942 1.20201 0.94694 0.95956 1.00712 1.20971 0.97368 0.96210 0.97846 1.21092 0.98861 0.94178 1.00182 1.21182 0.93652 0.99728 0.98672 1.21195 0.97906 0.96460 0.98054 1.21192 0.97867 0.93400 0.98637 1.20238 0.82416 0.81749 0.83543 1.90747 1.44341 1.53395 1.48924 0.95200 0.95032 0.92999 0.94066 0.87354 0.92373 0.89032 0.87116 0.90046 0.90639 0.89087 0.89431 0.86349 0.86207 0.86193 0.85965 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C -0.13 -3.46 5.49 -26.73 -0.15 -3.60 16 3 C 0.22 6.07 2.25 -27.89 -0.06 6.01 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.96 8.90 -34.44 -0.31 -15.26 16 6 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 7 C 0.06 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -25.39 11.29 55.43 0.63 -24.77 16 9 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 O -0.34 -8.55 9.79 -39.27 -0.38 -8.94 16 14 C 0.47 9.84 5.74 36.01 0.21 10.05 16 15 O -0.51 -11.15 12.61 -18.75 -0.24 -11.39 16 16 C -0.13 -1.97 3.43 -91.78 -0.31 -2.29 16 17 H 0.14 1.87 8.14 -51.93 -0.42 1.45 16 18 C -0.12 -1.32 6.51 -25.10 -0.16 -1.48 16 19 C 0.10 1.06 7.35 -3.12 -0.02 1.04 16 20 N -0.62 -7.86 2.92 -173.70 -0.51 -8.37 16 21 C 0.17 1.84 6.06 -5.20 -0.03 1.81 16 22 C -0.11 -1.43 5.46 -104.62 -0.57 -2.00 16 23 C -0.11 -1.18 9.70 -39.58 -0.38 -1.57 16 24 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 27 C -0.09 -1.31 9.70 -39.58 -0.38 -1.69 16 28 C 0.53 8.80 7.33 -10.71 -0.08 8.72 16 29 O -0.50 -10.00 17.61 5.56 0.10 -9.90 16 30 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.31 6.94 -51.93 -0.36 0.95 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 41 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -33.74 382.14 -9.68 -43.42 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.79 Total: 4.69 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.23 Total: -6.95 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.12 Total: -33.14 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.52 Total: -30.22 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -9.68 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.763 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds