Wall clock time and date at job start Tue Mar 31 2020 15:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 H 1.09005 * 110.43619 * 59.29327 * 16 14 13 18 18 C 1.54627 * 110.48570 * 181.84185 * 16 14 13 19 19 C 1.54480 * 101.76694 * 93.87765 * 18 16 14 20 20 N 1.46764 * 105.47360 * 25.41415 * 19 18 16 21 21 C 1.46501 * 124.34886 * 162.97818 * 20 19 18 22 22 C 1.50696 * 109.46682 * 90.00340 * 21 20 19 23 23 C 1.38231 * 120.00031 * 269.72566 * 22 21 20 24 24 C 1.38242 * 119.99822 * 179.74393 * 23 22 21 25 25 C 1.38234 * 120.00277 * 0.53406 * 24 23 22 26 26 C 1.38236 * 119.99773 * 359.74061 * 25 24 23 27 27 C 1.38231 * 120.00105 * 359.97438 * 26 25 24 28 28 C 1.34750 * 111.35187 * 343.02086 * 20 19 18 29 29 O 1.21276 * 125.12182 * 180.37358 * 28 20 19 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.96706 * 211.99867 * 18 16 14 37 37 H 1.09000 * 110.96999 * 335.75796 * 18 16 14 38 38 H 1.08996 * 110.24143 * 144.41575 * 19 18 16 39 39 H 1.08993 * 110.24522 * 266.32964 * 19 18 16 40 40 H 1.08998 * 109.47123 * 210.00237 * 21 20 19 41 41 H 1.08997 * 109.47533 * 330.00283 * 21 20 19 42 42 H 1.08001 * 119.99907 * 359.97438 * 23 22 21 43 43 H 1.08005 * 119.99761 * 180.29083 * 24 23 22 44 44 H 1.07998 * 120.00221 * 179.76874 * 25 24 23 45 45 H 1.08001 * 120.00194 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.00653 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 1 0.7204 4.1928 2.8025 18 6 -1.3959 4.0362 2.2967 19 6 -2.3143 2.9136 2.8284 20 7 -1.4979 2.1618 3.7888 21 6 -2.0395 1.2435 4.7936 22 6 -2.1238 -0.1442 4.2122 23 6 -3.2736 -0.5528 3.5627 24 6 -3.3490 -1.8240 3.0247 25 6 -2.2787 -2.6904 3.1458 26 6 -1.1310 -2.2837 3.8002 27 6 -1.0533 -1.0106 4.3331 28 6 -0.1859 2.4247 3.6291 29 8 0.7087 1.9347 4.2850 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 -1.5153 4.9479 2.8821 37 1 -1.5834 4.2258 1.2398 38 1 -3.1839 3.3420 3.3266 39 1 -2.6297 2.2654 2.0109 40 1 -1.3859 1.2329 5.6659 41 1 -3.0349 1.5746 5.0895 42 1 -4.1117 0.1225 3.4724 43 1 -4.2457 -2.1415 2.5132 44 1 -2.3390 -3.6847 2.7288 45 1 -0.2945 -2.9605 3.8945 46 1 -0.1569 -0.6930 4.8447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525463038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:53 Heat of formation + Delta-G solvation = -114.888402 kcal Electronic energy + Delta-G solvation = -29748.374780 eV Core-core repulsion = 25795.102412 eV Total energy + Delta-G solvation = -3953.272369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24577 -40.84627 -39.88181 -38.02896 -37.24689 -35.56489 -34.70973 -33.42000 -31.81059 -31.72671 -29.64733 -28.85684 -27.24595 -25.47415 -24.15895 -23.47202 -22.76598 -22.16959 -21.41764 -20.54448 -19.19597 -18.69804 -18.06749 -17.78119 -17.44999 -17.23561 -16.62103 -16.49601 -16.12461 -15.75784 -15.63452 -14.99241 -14.88732 -14.69429 -14.67832 -14.31209 -14.11966 -13.91518 -13.79308 -13.44428 -13.35618 -13.33948 -13.18674 -13.04913 -12.84677 -12.62482 -12.45275 -12.39143 -12.17675 -12.00839 -11.88709 -11.84552 -11.53585 -11.40546 -11.00363 -10.88832 -10.56740 -9.87559 -9.84108 -9.69186 -8.30828 -6.47475 0.30338 0.47699 1.00322 1.35980 1.40673 1.42142 1.50793 1.97141 2.10213 2.40071 2.91872 2.98365 3.18609 3.36240 3.75707 3.81292 3.89741 3.99845 4.12013 4.17683 4.24662 4.28643 4.28792 4.30377 4.46294 4.48708 4.55104 4.65287 4.69789 4.73134 4.75925 4.97885 4.99754 5.06370 5.10515 5.11663 5.13679 5.29137 5.46900 5.48628 5.52307 5.58767 5.59887 5.60925 5.89969 5.95673 6.08071 6.08874 6.54913 6.90199 6.98601 7.23441 8.75915 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.004228 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.302585 B = 6621.451158 C = 7680.111365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 C 0.228 3.772 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.978 3.022 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.267 1.267 13 O -0.364 6.364 14 C 0.463 3.537 15 O -0.521 6.521 16 C -0.128 4.128 17 H 0.151 0.849 18 C -0.109 4.109 19 C 0.099 3.901 20 N -0.604 5.604 21 C 0.166 3.834 22 C -0.123 4.123 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.121 4.121 28 C 0.524 3.476 29 O -0.550 6.550 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.272 0.728 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.121 0.879 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 2.521 12.611 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.033 0.967 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.801 3.199 10 H -0.194 1.194 11 H -0.197 1.197 12 H -0.191 1.191 13 O -0.281 6.281 14 C 0.306 3.694 15 O -0.411 6.411 16 C -0.151 4.151 17 H 0.168 0.832 18 C -0.146 4.146 19 C -0.023 4.023 20 N -0.337 5.337 21 C 0.046 3.954 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.140 4.140 28 C 0.310 3.690 29 O -0.427 6.427 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.139 0.861 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.109 2.105 12.520 22.115 hybrid contribution 1.550 -0.477 -0.529 1.706 sum -16.558 1.627 11.991 20.509 Atomic orbital electron populations 1.21579 0.95964 1.00072 0.99788 1.21817 0.94634 0.98290 1.01593 1.20376 0.94570 0.89108 0.78423 0.96721 1.21280 0.90649 1.40400 1.06877 0.92252 1.25749 1.04193 0.93674 0.94219 1.69980 1.37470 1.37690 1.09786 0.85309 0.77744 0.78938 0.77894 1.19432 1.19664 1.19142 1.86547 1.35990 1.62697 1.42818 1.23282 0.79838 0.76380 0.89900 1.90574 1.55468 1.58649 1.36422 1.22028 1.03814 0.98918 0.90299 0.83162 1.22784 0.87218 0.99134 1.05460 1.22421 0.95239 0.92679 0.91919 1.48454 1.06023 1.43745 1.35484 1.20493 1.02074 0.83907 0.88918 1.20418 0.94637 0.96440 1.00965 1.21365 0.97595 0.96714 0.96464 1.21517 0.99389 0.94098 0.99630 1.21471 0.93410 1.00928 0.98376 1.21350 0.98903 0.96492 0.99056 1.21224 0.98149 0.94593 1.00035 1.20463 0.83386 0.81760 0.83351 1.90720 1.46073 1.55153 1.50773 0.95293 0.92849 0.93765 0.95229 0.89259 0.91873 0.84602 0.87893 0.84742 0.91853 0.90084 0.84689 0.82916 0.83427 0.84451 0.86115 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.57 71.98 0.62 -4.80 16 2 C -0.13 -6.74 5.49 30.59 0.17 -6.58 16 3 C 0.23 13.04 2.25 29.85 0.07 13.11 16 4 H 0.02 0.93 7.16 -2.39 -0.02 0.92 16 5 C -0.55 -33.14 8.90 25.60 0.23 -32.91 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -53.12 11.29 21.45 0.24 -52.87 16 9 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 O -0.36 -19.07 9.79 -51.44 -0.50 -19.57 16 14 C 0.46 19.73 5.74 71.24 0.41 20.14 16 15 O -0.52 -23.23 12.61 21.96 0.28 -22.95 16 16 C -0.13 -3.88 3.43 -11.55 -0.04 -3.92 16 17 H 0.15 4.03 8.14 -2.38 -0.02 4.01 16 18 C -0.11 -2.02 6.51 31.65 0.21 -1.82 16 19 C 0.10 1.64 7.35 86.83 0.64 2.28 16 20 N -0.60 -14.05 2.92 -821.86 -2.40 -16.45 16 21 C 0.17 3.23 6.06 85.63 0.52 3.74 16 22 C -0.12 -2.94 5.46 -19.87 -0.11 -3.05 16 23 C -0.10 -2.00 9.70 22.27 0.22 -1.79 16 24 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 25 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 26 C -0.14 -3.88 10.05 22.27 0.22 -3.65 16 27 C -0.12 -3.59 9.70 22.27 0.22 -3.37 16 28 C 0.52 17.13 7.33 87.85 0.64 17.77 16 29 O -0.55 -22.87 17.61 -3.02 -0.05 -22.93 16 30 H 0.03 1.31 6.06 -2.39 -0.01 1.30 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 2.09 7.80 -2.38 -0.02 2.07 16 33 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.09 5.14 5.95 -2.39 -0.01 5.13 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 2.17 6.94 -2.39 -0.02 2.15 16 38 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.75 7.88 -2.39 -0.02 1.73 16 41 H 0.14 1.34 8.08 -2.39 -0.02 1.32 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.10 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -78.82 382.14 5.46 -73.36 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.97 Total: 23.13 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 4.90 Total: -8.15 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -2.16 Total: -69.32 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -0.28 Total: -65.45 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.82 5.46 -73.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.532 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds