Wall clock time and date at job start Tue Mar 31 2020 15:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.47076 * 295.00108 * 3 2 1 14 14 C 1.34225 * 117.00537 * 89.99893 * 13 3 2 15 15 O 1.20829 * 119.99778 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00501 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.43771 * 59.30088 * 16 14 13 18 18 C 1.54629 * 110.48954 * 181.84121 * 16 14 13 19 19 C 1.54482 * 101.76590 * 93.87943 * 18 16 14 20 20 N 1.46767 * 105.47153 * 25.41797 * 19 18 16 21 21 C 1.46503 * 124.34748 * 162.98208 * 20 19 18 22 22 C 1.50697 * 109.47122 * 89.99986 * 21 20 19 23 23 C 1.38236 * 119.99937 * 269.72900 * 22 21 20 24 24 C 1.38241 * 119.99659 * 179.74555 * 23 22 21 25 25 C 1.38233 * 120.00216 * 0.52483 * 24 23 22 26 26 C 1.38237 * 119.99709 * 359.74524 * 25 24 23 27 27 C 1.38226 * 120.00312 * 359.97438 * 26 25 24 28 28 C 1.34744 * 111.34920 * 343.01710 * 20 19 18 29 29 O 1.21279 * 125.11755 * 180.38921 * 28 20 19 30 30 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 31 31 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 32 32 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 34 34 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.97478 * 211.99938 * 18 16 14 37 37 H 1.09002 * 110.97047 * 335.76258 * 18 16 14 38 38 H 1.08999 * 110.24635 * 144.41485 * 19 18 16 39 39 H 1.08998 * 110.24324 * 266.41621 * 19 18 16 40 40 H 1.09000 * 109.46884 * 209.99937 * 21 20 19 41 41 H 1.08994 * 109.47107 * 330.00112 * 21 20 19 42 42 H 1.07997 * 119.99861 * 359.97438 * 23 22 21 43 43 H 1.08007 * 119.99476 * 180.29057 * 24 23 22 44 44 H 1.08000 * 120.00070 * 179.77136 * 25 24 23 45 45 H 1.07997 * 119.99725 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.00082 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3750 10 1 6.4483 2.0983 2.0803 11 1 6.4372 -0.3258 2.1443 12 1 6.6110 0.8303 0.0197 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0069 3.4215 -2.5088 17 1 -0.0657 2.7126 -3.3335 18 6 -1.3547 4.1139 -2.2688 19 6 -0.9172 5.5447 -1.8844 20 7 0.3982 5.7326 -2.5076 21 6 1.0359 7.0351 -2.7156 22 6 1.8729 7.3826 -1.5116 23 6 1.3148 8.0885 -0.4623 24 6 2.0813 8.4027 0.6445 25 6 3.4087 8.0204 0.6971 26 6 3.9682 7.3193 -0.3548 27 6 3.2003 7.0001 -1.4589 28 6 0.9446 4.5539 -2.8650 29 8 2.0278 4.4187 -3.3935 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8296 -0.0699 2.9451 36 1 -1.9547 4.1208 -3.1788 37 1 -1.8954 3.6382 -1.4506 38 1 -1.6271 6.2739 -2.2746 39 1 -0.8380 5.6366 -0.8012 40 1 1.6717 6.9913 -3.5998 41 1 0.2690 7.7966 -2.8570 42 1 0.2791 8.3913 -0.5055 43 1 1.6440 8.9501 1.4664 44 1 4.0085 8.2691 1.5601 45 1 5.0051 7.0203 -0.3135 46 1 3.6376 6.4528 -2.2808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525463039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:58 Heat of formation + Delta-G solvation = -96.335600 kcal Electronic energy + Delta-G solvation = -29438.956479 eV Core-core repulsion = 25486.488620 eV Total energy + Delta-G solvation = -3952.467859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90404 -39.39787 -38.73909 -36.50229 -35.68757 -33.70237 -33.44550 -31.36889 -30.82794 -30.64913 -28.21087 -27.11114 -26.25300 -23.60026 -22.75144 -22.37235 -21.74210 -20.60354 -19.80638 -19.16848 -17.61970 -17.05334 -16.58219 -16.49540 -15.99932 -15.79453 -15.30894 -15.05553 -14.68489 -14.51594 -14.29024 -13.73073 -13.60562 -13.34371 -13.14110 -12.91424 -12.79854 -12.75300 -12.43286 -12.16240 -12.11368 -11.59132 -11.46930 -11.45551 -11.23611 -11.14717 -11.09337 -10.93261 -10.91131 -10.64609 -10.25157 -9.89449 -9.77011 -9.60534 -9.36537 -8.84676 -8.83752 -8.78462 -8.66175 -8.42966 -6.15638 -4.21461 1.30314 1.48557 2.43815 2.86856 3.09299 3.26824 3.32085 3.37249 3.64939 3.92767 4.27704 4.36336 4.40011 4.71789 4.76211 4.86852 5.02115 5.05798 5.12297 5.16433 5.24191 5.37294 5.42436 5.50282 5.60116 5.69121 5.71663 5.79352 5.98041 6.02185 6.10303 6.21807 6.28344 6.44476 6.45794 6.49392 6.59060 6.63178 6.86268 6.94332 7.03994 7.05899 7.16263 7.23926 7.64214 7.74769 7.93825 8.18008 8.19969 8.60793 8.91382 9.43264 10.91330 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.005030 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.382740 B = 5564.967836 C = 7442.214769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.517 4.517 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 O -0.342 6.342 14 C 0.471 3.529 15 O -0.508 6.508 16 C -0.126 4.126 17 H 0.135 0.865 18 C -0.120 4.120 19 C 0.103 3.897 20 N -0.617 5.617 21 C 0.171 3.829 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.092 4.092 28 C 0.534 3.466 29 O -0.500 6.500 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.266 0.734 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 14.533 -7.647 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.257 6.257 14 C 0.313 3.687 15 O -0.398 6.398 16 C -0.149 4.149 17 H 0.153 0.847 18 C -0.158 4.158 19 C -0.020 4.020 20 N -0.352 5.352 21 C 0.049 3.951 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.135 4.135 27 C -0.110 4.110 28 C 0.320 3.680 29 O -0.373 6.373 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.500 14.389 -7.464 18.303 hybrid contribution 0.872 -0.190 0.441 0.996 sum -7.628 14.199 -7.023 17.582 Atomic orbital electron populations 1.21856 0.98380 0.99051 1.00629 1.22034 0.92639 0.99320 1.03511 1.20715 0.95173 0.88719 0.78390 0.93626 1.21054 0.89668 1.38461 1.06321 0.91285 1.24854 0.99160 0.94774 0.95057 1.69883 1.35311 1.38010 1.09599 0.86313 0.84069 0.77639 0.78418 1.20441 1.20916 1.19502 1.86551 1.33280 1.61785 1.44089 1.22254 0.81361 0.77113 0.88020 1.90599 1.55520 1.58809 1.34836 1.21797 0.96695 0.97928 0.98481 0.84689 1.22641 0.94724 0.94130 1.04303 1.22131 0.83550 0.97410 0.98894 1.48343 1.20036 1.05898 1.60915 1.20232 0.95779 0.83415 0.95647 1.20199 0.94774 0.99575 0.97144 1.20964 0.99309 0.98661 0.93540 1.21091 0.94388 1.00877 0.98026 1.21194 0.95457 0.98201 0.98387 1.21214 1.00363 0.98150 0.93823 1.21197 0.93595 0.97580 0.98669 1.20225 0.86000 0.83919 0.77844 1.90751 1.20069 1.84611 1.41880 0.92812 0.95043 0.94734 0.93867 0.87212 0.92453 0.89056 0.87151 0.90036 0.90618 0.89085 0.89442 0.86357 0.86201 0.86158 0.85880 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.45 5.48 -26.73 -0.15 -3.60 16 3 C 0.22 6.07 2.25 -27.88 -0.06 6.00 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -15.02 8.90 -34.44 -0.31 -15.33 16 6 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 7 C 0.06 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -25.49 11.28 55.43 0.63 -24.87 16 9 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 O -0.34 -8.55 9.79 -39.24 -0.38 -8.93 16 14 C 0.47 9.84 5.74 36.00 0.21 10.05 16 15 O -0.51 -11.16 12.61 -18.75 -0.24 -11.40 16 16 C -0.13 -1.96 3.43 -91.79 -0.31 -2.28 16 17 H 0.14 1.83 8.14 -51.93 -0.42 1.41 16 18 C -0.12 -1.32 6.51 -25.10 -0.16 -1.48 16 19 C 0.10 1.09 7.35 -3.12 -0.02 1.07 16 20 N -0.62 -8.12 2.92 -173.69 -0.51 -8.63 16 21 C 0.17 1.92 6.06 -5.19 -0.03 1.89 16 22 C -0.12 -1.53 5.46 -104.62 -0.57 -2.10 16 23 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 24 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 25 C -0.11 -1.49 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 27 C -0.09 -1.38 9.70 -39.58 -0.38 -1.76 16 28 C 0.53 8.99 7.33 -10.72 -0.08 8.91 16 29 O -0.50 -10.19 17.61 5.56 0.10 -10.09 16 30 H 0.05 1.21 7.80 -51.92 -0.40 0.81 16 31 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.11 2.99 5.94 -51.92 -0.31 2.68 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.30 6.94 -51.93 -0.36 0.94 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 41 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -34.05 382.12 -9.68 -43.73 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.78 Total: 4.96 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.23 Total: -7.24 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.12 Total: -33.50 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.52 Total: -30.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.05 -9.68 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.602 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds