Wall clock time and date at job start Tue Mar 31 2020 15:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.47076 * 295.00108 * 3 2 1 14 14 C 1.34225 * 117.00537 * 89.99893 * 13 3 2 15 15 O 1.20829 * 119.99778 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00501 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.43771 * 59.30088 * 16 14 13 18 18 C 1.54629 * 110.48954 * 181.84121 * 16 14 13 19 19 C 1.54482 * 101.76590 * 93.87943 * 18 16 14 20 20 N 1.46767 * 105.47153 * 25.41797 * 19 18 16 21 21 C 1.46503 * 124.34748 * 162.98208 * 20 19 18 22 22 C 1.50697 * 109.47122 * 89.99986 * 21 20 19 23 23 C 1.38236 * 119.99937 * 269.72900 * 22 21 20 24 24 C 1.38241 * 119.99659 * 179.74555 * 23 22 21 25 25 C 1.38233 * 120.00216 * 0.52483 * 24 23 22 26 26 C 1.38237 * 119.99709 * 359.74524 * 25 24 23 27 27 C 1.38226 * 120.00312 * 359.97438 * 26 25 24 28 28 C 1.34744 * 111.34920 * 343.01710 * 20 19 18 29 29 O 1.21279 * 125.11755 * 180.38921 * 28 20 19 30 30 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 31 31 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 32 32 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 34 34 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.97478 * 211.99938 * 18 16 14 37 37 H 1.09002 * 110.97047 * 335.76258 * 18 16 14 38 38 H 1.08999 * 110.24635 * 144.41485 * 19 18 16 39 39 H 1.08998 * 110.24324 * 266.41621 * 19 18 16 40 40 H 1.09000 * 109.46884 * 209.99937 * 21 20 19 41 41 H 1.08994 * 109.47107 * 330.00112 * 21 20 19 42 42 H 1.07997 * 119.99861 * 359.97438 * 23 22 21 43 43 H 1.08007 * 119.99476 * 180.29057 * 24 23 22 44 44 H 1.08000 * 120.00070 * 179.77136 * 25 24 23 45 45 H 1.07997 * 119.99725 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.00082 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3750 10 1 6.4483 2.0983 2.0803 11 1 6.4372 -0.3258 2.1443 12 1 6.6110 0.8303 0.0197 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0069 3.4215 -2.5088 17 1 -0.0657 2.7126 -3.3335 18 6 -1.3547 4.1139 -2.2688 19 6 -0.9172 5.5447 -1.8844 20 7 0.3982 5.7326 -2.5076 21 6 1.0359 7.0351 -2.7156 22 6 1.8729 7.3826 -1.5116 23 6 1.3148 8.0885 -0.4623 24 6 2.0813 8.4027 0.6445 25 6 3.4087 8.0204 0.6971 26 6 3.9682 7.3193 -0.3548 27 6 3.2003 7.0001 -1.4589 28 6 0.9446 4.5539 -2.8650 29 8 2.0278 4.4187 -3.3935 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8296 -0.0699 2.9451 36 1 -1.9547 4.1208 -3.1788 37 1 -1.8954 3.6382 -1.4506 38 1 -1.6271 6.2739 -2.2746 39 1 -0.8380 5.6366 -0.8012 40 1 1.6717 6.9913 -3.5998 41 1 0.2690 7.7966 -2.8570 42 1 0.2791 8.3913 -0.5055 43 1 1.6440 8.9501 1.4664 44 1 4.0085 8.2691 1.5601 45 1 5.0051 7.0203 -0.3135 46 1 3.6376 6.4528 -2.2808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525463039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:57 Heat of formation + Delta-G solvation = -115.574524 kcal Electronic energy + Delta-G solvation = -29439.790741 eV Core-core repulsion = 25486.488620 eV Total energy + Delta-G solvation = -3953.302121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23455 -40.86580 -39.89974 -38.02831 -37.24916 -35.56831 -34.72049 -33.38107 -31.83740 -31.74867 -29.64094 -28.85427 -27.26041 -25.46052 -24.15737 -23.49568 -22.78229 -22.14341 -21.40878 -20.57197 -19.20624 -18.62465 -18.13287 -17.78234 -17.54581 -17.18243 -16.67721 -16.45578 -16.13747 -15.78188 -15.63420 -15.00670 -14.84808 -14.73223 -14.66157 -14.33596 -14.08847 -13.96392 -13.74389 -13.39694 -13.38712 -13.33902 -13.19723 -13.03988 -12.87872 -12.63300 -12.45499 -12.39077 -12.19714 -12.01262 -11.90883 -11.78869 -11.53803 -11.39787 -11.01291 -10.86686 -10.57599 -9.89217 -9.86714 -9.71053 -8.33087 -6.48970 0.27770 0.44946 0.98917 1.33924 1.35502 1.40380 1.48087 1.97650 2.08687 2.37960 2.89260 2.95678 3.18858 3.35886 3.76093 3.79548 3.88075 4.00398 4.09637 4.16909 4.22188 4.26988 4.35030 4.38279 4.46071 4.53067 4.54078 4.63952 4.68459 4.71326 4.78582 4.98102 5.04136 5.07012 5.09011 5.10968 5.19106 5.35739 5.45859 5.47686 5.49632 5.56174 5.58478 5.63591 5.91663 5.95775 6.06514 6.08345 6.53343 6.90057 6.98210 7.21914 8.73603 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.005030 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.382740 B = 5564.967836 C = 7442.214769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.229 3.771 4 H 0.008 0.992 5 C -0.552 4.552 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.266 1.266 12 H -0.270 1.270 13 O -0.364 6.364 14 C 0.463 3.537 15 O -0.521 6.521 16 C -0.126 4.126 17 H 0.154 0.846 18 C -0.108 4.108 19 C 0.098 3.902 20 N -0.606 5.606 21 C 0.167 3.833 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.123 4.123 28 C 0.521 3.479 29 O -0.551 6.551 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.272 0.728 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.120 0.880 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 15.967 -7.854 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.169 4.169 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.191 1.191 12 H -0.194 1.194 13 O -0.280 6.280 14 C 0.306 3.694 15 O -0.411 6.411 16 C -0.148 4.148 17 H 0.172 0.828 18 C -0.145 4.145 19 C -0.023 4.023 20 N -0.339 5.339 21 C 0.047 3.953 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.161 4.161 27 C -0.141 4.141 28 C 0.308 3.692 29 O -0.428 6.428 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.154 0.846 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.168 0.832 44 H 0.155 0.845 45 H 0.138 0.862 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.028 15.853 -7.655 20.773 hybrid contribution 1.591 -0.563 0.550 1.775 sum -9.437 15.290 -7.105 19.322 Atomic orbital electron populations 1.21704 0.95588 1.00905 1.00337 1.21873 0.95105 0.97609 1.02301 1.20367 0.94266 0.89517 0.78276 0.97471 1.21260 0.90892 1.39921 1.06876 0.93064 1.25678 1.03920 0.93771 0.94261 1.69977 1.37222 1.37676 1.09836 0.85348 0.78199 0.78376 0.78547 1.19748 1.19078 1.19418 1.86544 1.35907 1.62815 1.42785 1.23287 0.79821 0.76451 0.89882 1.90577 1.55444 1.59095 1.36002 1.22018 0.98893 0.97906 0.96009 0.82843 1.22790 0.92114 0.93285 1.06302 1.22440 0.83015 0.98684 0.98209 1.48481 1.20691 1.05466 1.59266 1.20491 0.96889 0.83539 0.94404 1.20459 0.94057 0.99561 0.98485 1.21391 1.00928 0.97316 0.92509 1.21540 0.93882 1.00278 0.98997 1.21492 0.96602 0.97953 0.98384 1.21378 1.00644 0.99426 0.94665 1.21244 0.95314 0.98975 0.98605 1.20548 0.85559 0.85411 0.77730 1.90722 1.22136 1.85512 1.44432 0.94158 0.94163 0.91727 0.93899 0.89371 0.91841 0.84416 0.87776 0.84627 0.92113 0.90038 0.84506 0.82639 0.83237 0.84459 0.86205 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.57 71.98 0.62 -4.93 16 2 C -0.13 -6.78 5.48 30.59 0.17 -6.61 16 3 C 0.23 13.10 2.25 29.85 0.07 13.16 16 4 H 0.01 0.48 7.16 -2.38 -0.02 0.46 16 5 C -0.55 -33.64 8.90 25.60 0.23 -33.42 16 6 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 7 C 0.02 1.38 5.29 84.65 0.45 1.83 16 8 N -0.91 -53.24 11.28 21.45 0.24 -53.00 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 O -0.36 -19.07 9.79 -51.37 -0.50 -19.57 16 14 C 0.46 19.67 5.74 71.23 0.41 20.08 16 15 O -0.52 -23.21 12.61 21.95 0.28 -22.93 16 16 C -0.13 -3.79 3.43 -11.55 -0.04 -3.83 16 17 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 18 C -0.11 -1.98 6.51 31.65 0.21 -1.77 16 19 C 0.10 1.69 7.35 86.83 0.64 2.32 16 20 N -0.61 -14.74 2.92 -821.85 -2.40 -17.15 16 21 C 0.17 3.44 6.06 85.63 0.52 3.95 16 22 C -0.12 -3.20 5.46 -19.87 -0.11 -3.31 16 23 C -0.10 -2.18 9.70 22.27 0.22 -1.97 16 24 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 25 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 26 C -0.14 -4.39 10.05 22.27 0.22 -4.16 16 27 C -0.12 -3.93 9.70 22.27 0.22 -3.72 16 28 C 0.52 17.50 7.33 87.85 0.64 18.15 16 29 O -0.55 -23.54 17.61 -3.03 -0.05 -23.59 16 30 H 0.04 1.82 7.80 -2.38 -0.02 1.81 16 31 H 0.04 1.64 6.06 -2.39 -0.01 1.62 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.09 4.95 5.94 -2.38 -0.01 4.93 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.14 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.10 2.14 6.94 -2.39 -0.02 2.13 16 38 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.85 7.88 -2.39 -0.02 1.83 16 41 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 42 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 45 H 0.12 3.52 8.06 -2.91 -0.02 3.49 16 46 H 0.10 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -80.70 382.12 5.46 -75.25 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.97 Total: 23.55 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.90 Total: -9.91 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -2.16 Total: -70.15 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -0.28 Total: -66.09 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -80.70 5.46 -75.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.329 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds