Wall clock time and date at job start Tue Mar 31 2020 16:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47110 * 2 1 4 4 H 1.08995 * 109.47467 * 304.99861 * 3 2 1 5 5 C 1.50706 * 109.47059 * 185.00008 * 3 2 1 6 6 H 1.08004 * 119.99892 * 240.00337 * 5 3 2 7 7 C 1.37869 * 120.00232 * 59.99769 * 5 3 2 8 8 N 1.31520 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00483 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47511 * 120.00128 * 9 7 5 12 12 H 1.48506 * 109.47214 * 240.00361 * 9 7 5 13 13 O 1.45203 * 109.47430 * 65.00292 * 3 2 1 14 14 C 1.34233 * 116.99598 * 270.00071 * 13 3 2 15 15 O 1.20820 * 119.99913 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99752 * 179.97438 * 14 13 3 17 17 H 1.08995 * 110.53859 * 302.61236 * 16 14 13 18 18 C 1.54629 * 110.48527 * 179.97438 * 16 14 13 19 19 C 1.54479 * 101.76524 * 266.12124 * 18 16 14 20 20 N 1.46762 * 105.47368 * 334.58094 * 19 18 16 21 21 C 1.46500 * 124.34610 * 197.01457 * 20 19 18 22 22 C 1.50701 * 109.46797 * 90.00674 * 21 20 19 23 23 C 1.38235 * 119.99808 * 89.99740 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38232 * 120.00069 * 0.09581 * 24 23 22 26 26 C 1.38234 * 119.99866 * 359.86117 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97486 * 22 21 20 28 28 C 1.34417 * 111.29937 * 17.29000 * 20 19 18 29 29 O 1.21283 * 124.94120 * 179.30296 * 28 20 19 30 30 H 1.09007 * 109.47306 * 300.00444 * 1 2 3 31 31 H 1.08997 * 109.47160 * 59.99789 * 1 2 3 32 32 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47124 * 239.99661 * 2 1 3 34 34 H 1.09000 * 109.46443 * 120.00141 * 2 1 3 35 35 H 0.96997 * 120.00244 * 179.97438 * 8 7 5 36 36 H 1.08995 * 110.96535 * 148.00063 * 18 16 14 37 37 H 1.09006 * 110.96647 * 24.24083 * 18 16 14 38 38 H 1.08999 * 110.23989 * 215.58358 * 19 18 16 39 39 H 1.08996 * 110.24527 * 93.58607 * 19 18 16 40 40 H 1.08993 * 109.47763 * 330.00212 * 21 20 19 41 41 H 1.09001 * 109.46756 * 209.99935 * 21 20 19 42 42 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 43 43 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.99666 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.99729 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00371 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5989 1.5451 -0.1936 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6091 13 8 1.6559 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2653 16 6 0.0070 3.4217 2.5088 17 1 -0.0338 2.7212 3.3428 18 6 -1.3758 4.0756 2.2823 19 6 -0.9818 5.5134 1.8775 20 7 0.3370 5.7421 2.4794 21 6 0.9429 7.0629 2.6653 22 6 0.5485 7.6115 4.0123 23 6 1.3323 7.3514 5.1209 24 6 0.9707 7.8550 6.3565 25 6 -0.1756 8.6170 6.4838 26 6 -0.9589 8.8778 5.3750 27 6 -0.5968 8.3750 4.1392 28 6 0.9200 4.5837 2.8329 29 8 2.0171 4.4846 3.3403 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 3.8292 -0.0605 -2.9502 36 1 -1.9623 4.0757 3.2009 37 1 -1.9155 3.5776 1.4767 38 1 -1.7051 6.2275 2.2712 39 1 -0.9208 5.5965 0.7925 40 1 0.5940 7.7362 1.8824 41 1 2.0282 6.9755 2.6122 42 1 2.2247 6.7511 5.0226 43 1 1.5828 7.6515 7.2227 44 1 -0.4583 9.0101 7.4491 45 1 -1.8542 9.4734 5.4743 46 1 -1.2091 8.5782 3.2731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525463040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:02 Heat of formation + Delta-G solvation = -96.536478 kcal Electronic energy + Delta-G solvation = -28722.917556 eV Core-core repulsion = 24770.440986 eV Total energy + Delta-G solvation = -3952.476569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95786 -39.54006 -38.86668 -36.51232 -35.71173 -33.77913 -33.46670 -31.38705 -31.09529 -30.79415 -28.23257 -27.12220 -26.36178 -23.62373 -22.87759 -22.49903 -21.90900 -20.63898 -19.81630 -19.21106 -17.64027 -17.17048 -16.77113 -16.55691 -15.96839 -15.78579 -15.42997 -15.24854 -14.77561 -14.59413 -14.23322 -13.82776 -13.72304 -13.59979 -13.17132 -12.99340 -12.84523 -12.81504 -12.59734 -12.19644 -12.12467 -11.60204 -11.51146 -11.47358 -11.38281 -11.17947 -11.15249 -11.12522 -10.94382 -10.63082 -10.24828 -9.90455 -9.78193 -9.62611 -9.37629 -9.11921 -9.03120 -8.79350 -8.75324 -8.44203 -6.16695 -4.22696 1.05679 1.20591 2.43557 2.80808 3.05995 3.25882 3.32750 3.39013 3.64189 3.69181 4.26840 4.36022 4.38437 4.56638 4.62871 4.79055 4.79640 4.93531 5.03139 5.06208 5.15444 5.27597 5.37454 5.41953 5.47345 5.54293 5.69854 5.76924 5.78715 5.85203 5.96885 6.21172 6.23432 6.27669 6.31302 6.37651 6.43616 6.45977 6.79002 6.85158 6.93368 7.02753 7.15236 7.22637 7.63406 7.73461 7.92623 8.16753 8.18933 8.59288 8.90600 9.42352 10.90241 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003048 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.582882 B = 9183.980391 C =10204.721652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.518 4.518 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.910 3.090 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.342 6.342 14 C 0.471 3.529 15 O -0.508 6.508 16 C -0.125 4.125 17 H 0.135 0.865 18 C -0.120 4.120 19 C 0.102 3.898 20 N -0.615 5.615 21 C 0.166 3.834 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.106 4.106 28 C 0.534 3.466 29 O -0.501 6.501 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 14.841 12.804 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.737 3.263 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.257 6.257 14 C 0.312 3.688 15 O -0.398 6.398 16 C -0.148 4.148 17 H 0.153 0.847 18 C -0.157 4.157 19 C -0.020 4.020 20 N -0.350 5.350 21 C 0.044 3.956 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.124 4.124 28 C 0.320 3.680 29 O -0.374 6.374 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.310 14.720 12.564 22.415 hybrid contribution 0.763 -0.114 -0.176 0.791 sum -10.547 14.606 12.388 21.864 Atomic orbital electron populations 1.21858 0.98374 0.99073 1.00637 1.22028 0.92638 0.99287 1.03502 1.20739 0.95217 0.88778 0.78394 0.93537 1.21108 0.89676 1.38589 1.06214 0.91168 1.24874 0.99262 0.94775 0.95047 1.69897 1.35264 1.38133 1.09491 0.86238 0.83950 0.77880 0.78243 1.19385 1.20688 1.20781 1.86559 1.33288 1.61756 1.44108 1.22275 0.81351 0.77120 0.88035 1.90598 1.55505 1.58801 1.34880 1.21795 0.96684 0.97715 0.98590 0.84697 1.22628 0.94576 0.94362 1.04183 1.22141 0.83801 0.97203 0.98877 1.48221 1.19694 1.05587 1.61490 1.20262 0.99497 0.82464 0.93351 1.20273 0.95923 0.98512 0.96097 1.21258 0.99831 0.98170 0.92189 1.21196 0.97177 0.98135 0.97544 1.21178 0.95208 0.98677 0.98621 1.21115 0.99887 1.00523 0.92855 1.21045 0.96107 0.97599 0.97661 1.20158 0.86051 0.84135 0.77671 1.90755 1.19171 1.85251 1.42236 0.95033 0.92793 0.94729 0.87233 0.93867 0.92491 0.89191 0.87122 0.90188 0.90318 0.89241 0.88821 0.85423 0.86024 0.86235 0.86144 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.57 37.16 0.32 -2.74 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.96 2.25 -27.88 -0.06 5.90 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.93 8.90 -34.44 -0.31 -15.23 16 6 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.30 11.29 55.43 0.63 -24.68 16 9 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 O -0.34 -8.44 9.81 -39.26 -0.39 -8.83 16 14 C 0.47 9.68 5.72 36.01 0.21 9.88 16 15 O -0.51 -10.94 12.62 -18.75 -0.24 -11.17 16 16 C -0.13 -1.94 3.45 -91.78 -0.32 -2.26 16 17 H 0.14 1.86 8.14 -51.93 -0.42 1.44 16 18 C -0.12 -1.33 6.50 -25.10 -0.16 -1.49 16 19 C 0.10 1.08 7.34 -3.12 -0.02 1.05 16 20 N -0.62 -8.06 2.91 -173.79 -0.51 -8.56 16 21 C 0.17 1.85 6.06 -5.19 -0.03 1.82 16 22 C -0.11 -1.13 5.46 -104.63 -0.57 -1.70 16 23 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.13 -1.04 10.05 -39.58 -0.40 -1.43 16 27 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 28 C 0.53 8.96 7.32 -10.86 -0.08 8.88 16 29 O -0.50 -10.20 17.59 5.55 0.10 -10.10 16 30 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 31 H 0.05 1.20 7.80 -51.93 -0.40 0.80 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.29 6.96 -51.93 -0.36 0.93 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.09 1.17 7.86 -51.93 -0.41 0.76 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -33.40 382.10 -9.69 -43.08 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.79 Total: 2.97 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.23 Total: -5.02 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.12 Total: -33.24 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.52 Total: -30.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.40 -9.69 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.455 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds