Wall clock time and date at job start Tue Mar 31 2020 16:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47110 * 2 1 4 4 H 1.08995 * 109.47467 * 304.99861 * 3 2 1 5 5 C 1.50706 * 109.47059 * 185.00008 * 3 2 1 6 6 H 1.08004 * 119.99892 * 240.00337 * 5 3 2 7 7 C 1.37869 * 120.00232 * 59.99769 * 5 3 2 8 8 N 1.31520 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00483 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47511 * 120.00128 * 9 7 5 12 12 H 1.48506 * 109.47214 * 240.00361 * 9 7 5 13 13 O 1.45203 * 109.47430 * 65.00292 * 3 2 1 14 14 C 1.34233 * 116.99598 * 270.00071 * 13 3 2 15 15 O 1.20820 * 119.99913 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99752 * 179.97438 * 14 13 3 17 17 H 1.08995 * 110.53859 * 302.61236 * 16 14 13 18 18 C 1.54629 * 110.48527 * 179.97438 * 16 14 13 19 19 C 1.54479 * 101.76524 * 266.12124 * 18 16 14 20 20 N 1.46762 * 105.47368 * 334.58094 * 19 18 16 21 21 C 1.46500 * 124.34610 * 197.01457 * 20 19 18 22 22 C 1.50701 * 109.46797 * 90.00674 * 21 20 19 23 23 C 1.38235 * 119.99808 * 89.99740 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38232 * 120.00069 * 0.09581 * 24 23 22 26 26 C 1.38234 * 119.99866 * 359.86117 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97486 * 22 21 20 28 28 C 1.34417 * 111.29937 * 17.29000 * 20 19 18 29 29 O 1.21283 * 124.94120 * 179.30296 * 28 20 19 30 30 H 1.09007 * 109.47306 * 300.00444 * 1 2 3 31 31 H 1.08997 * 109.47160 * 59.99789 * 1 2 3 32 32 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47124 * 239.99661 * 2 1 3 34 34 H 1.09000 * 109.46443 * 120.00141 * 2 1 3 35 35 H 0.96997 * 120.00244 * 179.97438 * 8 7 5 36 36 H 1.08995 * 110.96535 * 148.00063 * 18 16 14 37 37 H 1.09006 * 110.96647 * 24.24083 * 18 16 14 38 38 H 1.08999 * 110.23989 * 215.58358 * 19 18 16 39 39 H 1.08996 * 110.24527 * 93.58607 * 19 18 16 40 40 H 1.08993 * 109.47763 * 330.00212 * 21 20 19 41 41 H 1.09001 * 109.46756 * 209.99935 * 21 20 19 42 42 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 43 43 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.99666 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.99729 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00371 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5989 1.5451 -0.1936 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6091 13 8 1.6559 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2653 16 6 0.0070 3.4217 2.5088 17 1 -0.0338 2.7212 3.3428 18 6 -1.3758 4.0756 2.2823 19 6 -0.9818 5.5134 1.8775 20 7 0.3370 5.7421 2.4794 21 6 0.9429 7.0629 2.6653 22 6 0.5485 7.6115 4.0123 23 6 1.3323 7.3514 5.1209 24 6 0.9707 7.8550 6.3565 25 6 -0.1756 8.6170 6.4838 26 6 -0.9589 8.8778 5.3750 27 6 -0.5968 8.3750 4.1392 28 6 0.9200 4.5837 2.8329 29 8 2.0171 4.4846 3.3403 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 3.8292 -0.0605 -2.9502 36 1 -1.9623 4.0757 3.2009 37 1 -1.9155 3.5776 1.4767 38 1 -1.7051 6.2275 2.2712 39 1 -0.9208 5.5965 0.7925 40 1 0.5940 7.7362 1.8824 41 1 2.0282 6.9755 2.6122 42 1 2.2247 6.7511 5.0226 43 1 1.5828 7.6515 7.2227 44 1 -0.4583 9.0101 7.4491 45 1 -1.8542 9.4734 5.4743 46 1 -1.2091 8.5782 3.2731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525463040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:01 Heat of formation + Delta-G solvation = -114.867305 kcal Electronic energy + Delta-G solvation = -28723.712440 eV Core-core repulsion = 24770.440986 eV Total energy + Delta-G solvation = -3953.271454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27221 -40.88663 -39.87185 -38.03347 -37.25975 -35.55701 -34.72468 -33.36975 -31.78797 -31.74337 -29.64676 -28.86947 -27.27617 -25.45430 -24.17252 -23.42559 -22.72556 -22.15285 -21.39364 -20.59380 -19.22426 -18.62407 -18.10994 -17.83967 -17.55953 -17.14429 -16.62317 -16.39647 -16.18294 -15.76575 -15.48281 -15.10820 -14.92571 -14.71256 -14.62917 -14.27674 -14.09770 -13.97201 -13.70620 -13.42444 -13.37996 -13.32737 -13.17438 -13.05047 -12.86959 -12.60956 -12.48854 -12.33139 -12.18023 -12.05692 -11.85994 -11.77732 -11.52807 -11.38504 -11.02865 -10.85750 -10.56087 -9.89536 -9.81869 -9.69019 -8.31907 -6.47897 0.32651 0.50216 0.97750 1.35958 1.37226 1.38931 1.51838 1.93616 2.10429 2.39438 2.94286 2.96875 3.15546 3.32951 3.73976 3.78963 3.88481 3.98445 4.13854 4.16212 4.25457 4.30371 4.36468 4.39549 4.42863 4.54899 4.55584 4.63942 4.68660 4.74766 4.79853 4.94379 5.06793 5.07938 5.08643 5.15847 5.20231 5.36501 5.44282 5.47578 5.56060 5.62277 5.64506 5.64660 5.91662 5.94961 6.08907 6.10970 6.54801 6.90303 6.95879 7.23138 8.74858 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003048 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.582882 B = 9183.980391 C =10204.721652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.976 3.024 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.271 1.271 13 O -0.364 6.364 14 C 0.464 3.536 15 O -0.519 6.519 16 C -0.123 4.123 17 H 0.151 0.849 18 C -0.107 4.107 19 C 0.098 3.902 20 N -0.605 5.605 21 C 0.162 3.838 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.102 4.102 28 C 0.521 3.479 29 O -0.553 6.553 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.272 0.728 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.144 0.856 45 H 0.151 0.849 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 16.317 13.581 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.799 3.201 10 H -0.197 1.197 11 H -0.191 1.191 12 H -0.196 1.196 13 O -0.280 6.280 14 C 0.307 3.693 15 O -0.409 6.409 16 C -0.146 4.146 17 H 0.169 0.831 18 C -0.145 4.145 19 C -0.023 4.023 20 N -0.338 5.338 21 C 0.041 3.959 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.120 4.120 28 C 0.307 3.693 29 O -0.430 6.430 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.814 16.227 13.324 25.133 hybrid contribution 1.460 -0.478 -0.408 1.589 sum -12.354 15.749 12.916 23.822 Atomic orbital electron populations 1.21710 0.95608 1.00900 1.00383 1.21866 0.95081 0.97619 1.02261 1.20415 0.94338 0.89586 0.78339 0.97086 1.21312 0.90899 1.40038 1.06757 0.92911 1.25713 1.04048 0.93794 0.94274 1.69990 1.37185 1.37812 1.09747 0.85241 0.78017 0.78581 0.78226 1.19718 1.19113 1.19643 1.86550 1.35841 1.62769 1.42852 1.23210 0.79865 0.76467 0.89756 1.90577 1.55389 1.59020 1.35920 1.21982 0.98857 0.97478 0.96245 0.83146 1.22756 0.91914 0.93749 1.06048 1.22423 0.83142 0.98054 0.98714 1.48382 1.20368 1.05294 1.59768 1.20412 0.98210 0.82057 0.95230 1.20189 0.96976 0.99656 0.94986 1.21216 0.99784 0.99340 0.93766 1.21365 0.98180 0.98557 0.97108 1.21516 0.94349 0.97719 1.00134 1.21514 1.00495 0.99887 0.92242 1.21319 0.95227 0.96430 0.99061 1.20479 0.85678 0.85582 0.77565 1.90722 1.21328 1.86132 1.44846 0.94176 0.94039 0.91795 0.89397 0.93957 0.91857 0.85256 0.87336 0.85747 0.90877 0.86136 0.91492 0.88241 0.85298 0.83824 0.83172 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.57 71.98 0.62 -4.90 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.23 12.79 2.25 29.85 0.07 12.86 16 4 H 0.01 0.70 7.16 -2.39 -0.02 0.69 16 5 C -0.55 -33.32 8.90 25.60 0.23 -33.09 16 6 H 0.05 3.27 7.81 -2.91 -0.02 3.25 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -52.77 11.29 21.45 0.24 -52.53 16 9 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 O -0.36 -18.83 9.81 -51.44 -0.50 -19.33 16 14 C 0.46 19.51 5.72 71.24 0.41 19.92 16 15 O -0.52 -22.68 12.62 21.98 0.28 -22.40 16 16 C -0.12 -3.77 3.45 -11.54 -0.04 -3.81 16 17 H 0.15 4.06 8.14 -2.39 -0.02 4.04 16 18 C -0.11 -2.09 6.50 31.65 0.21 -1.88 16 19 C 0.10 1.78 7.34 86.83 0.64 2.42 16 20 N -0.61 -15.40 2.91 -822.33 -2.40 -17.80 16 21 C 0.16 3.56 6.06 85.63 0.52 4.08 16 22 C -0.12 -2.37 5.46 -19.87 -0.11 -2.47 16 23 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 27 C -0.10 -1.45 9.70 22.27 0.22 -1.24 16 28 C 0.52 17.91 7.32 87.90 0.64 18.56 16 29 O -0.55 -24.07 17.59 -3.04 -0.05 -24.12 16 30 H 0.04 1.62 6.06 -2.38 -0.01 1.60 16 31 H 0.04 1.85 7.80 -2.39 -0.02 1.83 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.09 4.89 5.95 -2.39 -0.01 4.88 16 34 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 2.25 6.96 -2.38 -0.02 2.23 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 41 H 0.07 1.82 7.86 -2.39 -0.02 1.80 16 42 H 0.10 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -77.87 382.10 5.46 -72.41 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.97 Total: 19.00 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.89 Total: -2.21 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -2.15 Total: -70.33 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -0.28 Total: -65.85 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.87 5.46 -72.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525463040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.454 kcal (2) G-P(sol) polarization free energy of solvation -77.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds